TCONS_00053770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053770
Unique NameTCONS_00053770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053770 ID=TCONS_00053770|Name=TCONS_00053770|organism=Clytia hemisphaerica|type=transcript|length=741bp
TGTACCAACCATGAATTTCAGCATTATCCCCCCAATTGAAGAAGTGACCT
TTAGAAAATAAGTGTCATAGTTCACTTTGTATTAAATATTTGGATTTAAA
AGCGAAATAAGTCGAACAATTATTGATTACAATTTACAATTACAATCCCA
TCACCGACCTCTAAAcataaataatgaataatgtCCTTTCAAATTTGCTT
CACATATTCAGCTTTTTTACTGCTGTCCTTGTTTTTCTTTAATATATCAG
TTTTGTCTTTAAATCATTAGCTGATCAACTTAGACATACTTGGAGTCTCA
TTTCAACGGTCACACAATCACCATGCCAACACACATCAACGAACCGTGAG
ACCTCACGCTCTATACATCCACCCATTCCATATCGGTTTGTACCCGTTTT
GGTGCATCTCTCGATTATGGATTGCCAACATTCAAGGTATTCTTCGAATG
ATCCATtggcaaaatcacaaaatcgcTCTGCATGACTTTTGCATATTCTA
GTTAAAGATCGAACTCTCCTCCATTCTATCTGATTGCTTGAGCTGTCTCC
TCCCTCAGAATCACAACCACTTATTAAAAGTGTGGCAACTATAGAAATGA
TAATGGTTGAATACTTCAGCTccatttttatatattttttatctaaaact
CTGTTGTTGAATCTACGATTGGTGTAACTTGAATAAAGTTAAATGATGTT
TTGGGTAGTcttgttgtcatttttttcaaggGAATTTCTCC
Run BLAST on NCBI

protein sequence of TCONS_00053770-protein

>TCONS_00053770-protein ID=TCONS_00053770-protein|Name=TCONS_00053770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MELKYSTIIISIVATLLISGCDSEGGDSSSNQIEWRRVRSLTRICKSHAE
RFCDFANGSFEEYLECWQSIIERCTKTGTNRYGMGGCIEREVSRFVDVCW
HGDCVTVEMRLQVCLS
Run BLAST on NCBI

transcript from alignment at scaffold_233:1158762..1159502

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053770 ID=TCONS_00053770|Name=TCONS_00053770|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at scaffold_233:1158762..1159502 (Clytia hemisphaerica)
GGAGAAATTCccttgaaaaaaatgacaacaagACTACCCAAAACATCATT
TAACTTTATTCAAGTTACACCAATCGTAGATTCAACAACAGagttttaga
taaaaaatatataaaaatggAGCTGAAGTATTCAACCATTATCATTTCTA
TAGTTGCCACACTTTTAATAAGTGGTTGTGATTCTGAGGGAGGAGACAGC
TCAAGCAATCAGATAGAATGGAGGAGAGTTCGATCTTTAACTAGAATATG
CAAAAGTCATGCAGAgcgattttgtgattttgccaATGGATCATTCGAAG
AATACCTTGAATGTTGGCAATCCATAATCGAGAGATGCACCAAAACGGGT
ACAAACCGATATGGAATGGGTGGATGTATAGAGCGTGAGGTCTCACGGTT
CGTTGATGTGTGTTGGCATGGTGATTGTGTGACCGTTGAAATGAGACTCC
AAGTATGTCTAAGTTGATCAGCTAATGATTTAAAGACAAAACTGATATAT
TAAAGAAAAACAAGGACAGCAGTAAAAAAGCTGAATATGTGAAGCAAATT
TGAAAGGacattattcattatttatgTTTAGAGGTCGGTGATGGGATTGT
AATTGTAAATTGTAATCAATAATTGTTCGACTTATTTCGCTTTTAAATCC
AAATATTTAATACAAAGTGAACTATGACACTTATTTTCTAAAGGTCACTT
CTTCAATTGGGGGGATAATGCTGAAATTCATGGTTGGTACA

Coding sequence (CDS) from alignment at scaffold_233:1158762..1159502

>TCONS_00053770 ID=TCONS_00053770|Name=TCONS_00053770|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_233:1158762..1159502 (Clytia hemisphaerica)
atggAGCTGAAGTATTCAACCATTATCATTTCTATAGTTGCCACACTTTT
AATAAGTGGTTGTGATTCTGAGGGAGGAGACAGCTCAAGCAATCAGATAG
AATGGAGGAGAGTTCGATCTTTAACTAGAATATGCAAAAGTCATGCAGAg
cgattttgtgattttgccaATGGATCATTCGAAGAATACCTTGAATGTTG
GCAATCCATAATCGAGAGATGCACCAAAACGGGTACAAACCGATATGGAA
TGGGTGGATGTATAGAGCGTGAGGTCTCACGGTTCGTTGATGTGTGTTGG
CATGGTGATTGTGTGACCGTTGAAATGAGACTCCAAGTATGTCTAAGTTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033932XLOC_033932Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053770-proteinTCONS_00053770-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053770-exon-scaffold_233-1491911889:1158762..1159502TCONS_00053770-exon-scaffold_233-1491911889:1158762..1159502Clytia hemisphaericaexon
TCONS_00053770-exon-scaffold_233-1510915933:1158762..1159502TCONS_00053770-exon-scaffold_233-1510915933:1158762..1159502Clytia hemisphaericaexon
TCONS_00053770-exon-scaffold_233-1575043694:1158762..1159502TCONS_00053770-exon-scaffold_233-1575043694:1158762..1159502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1158762..1159502 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133375	0.195092	0.151014	0	1.61877	1.6345	1.3718	2.00666	10.7335	8.07454	4.93213	6.97292	0.133055	0.506657	0	0.203187	0.150186	0.102624	0.638012	0.296726	0.128954	0.188698	0.0764626	0.0695156	0.859193	0.319504	0.182884	0	0.222054	0.0754125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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