TCONS_00053781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053781
Unique NameTCONS_00053781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053781 ID=TCONS_00053781|Name=TCONS_00053781|organism=Clytia hemisphaerica|type=transcript|length=371bp
taattttttGTCTAAAGTGAAAGCGCTTTCAACACTCTTTTCACTAAGAA
AATGATGTAGCAACGATAATAGTACCAAGTCTGTATCACTGTCTCAAAAA
ACTTTGGGCCATCGTAGCGAACGTTGTAATCAAAAGTTCCCCGGAATTCC
GGTAAATTCATTTCTTTGACATCATTATTGTGTTTAGTGATTATTCTAGC
GGTTCCCCTTTTAAGATTTGCTAGCAGATTTTCTATGTAAGCCGTGAGTC
TTTCCATTTCATTTTCGATAAATGACATTTGGCCGAAAGCGATATGTTTC
CATTCACCATCCTGTAACCTAGCAACCGAACACATAGCTCCTTGTCTTAG
ATCTCCGGACATAGTATTCCC
Run BLAST on NCBI

transcript from alignment at scaffold_233:1299580..1299950

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053781 ID=TCONS_00053781|Name=TCONS_00053781|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_233:1299580..1299950 (Clytia hemisphaerica)
GGGAATACTATGTCCGGAGATCTAAGACAAGGAGCTATGTGTTCGGTTGC
TAGGTTACAGGATGGTGAATGGAAACATATCGCTTTCGGCCAAATGTCAT
TTATCGAAAATGAAATGGAAAGACTCACGGCTTACATAGAAAATCTGCTA
GCAAATCTTAAAAGGGGAACCGCTAGAATAATCACTAAACACAATAATGA
TGTCAAAGAAATGAATTTACCGGAATTCCGGGGAACTTTTGATTACAACG
TTCGCTACGATGGCCCAAAGTTTTTTGAGACAGTGATACAGACTTGGTAC
TATTATCGTTGCTACATCATTTTCTTAGTGAAAAGAGTGTTGAAAGCGCT
TTCACTTTAGACaaaaaatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033942XLOC_033942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053781-exon-scaffold_233-1491911889:1299580..1299950TCONS_00053781-exon-scaffold_233-1491911889:1299580..1299950Clytia hemisphaericaexon
TCONS_00053781-exon-scaffold_233-1510915933:1299580..1299950TCONS_00053781-exon-scaffold_233-1510915933:1299580..1299950Clytia hemisphaericaexon
TCONS_00053781-exon-scaffold_233-1575043694:1299580..1299950TCONS_00053781-exon-scaffold_233-1575043694:1299580..1299950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1299580..1299950 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.450231	0.0249142	0	1.60714	1.78792	0.286877	1.28899	1.84524	0.652531	1.16146	1.7857	0.671161	0.958447	1.27952	1.18178	4.21269	5.53372	2.34781	0.884287	1.68344	0.49552	0.370857	0.607263	1.50657	3.45509	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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