|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053782 ID=TCONS_00053782|Name=TCONS_00053782|organism=Clytia hemisphaerica|type=transcript|length=1294bp
cgaaaaataaagaaactaggAATAGATGGAAAATTATTACAGTGGCTAAA
GTCCTTCCTAACAGAGAGAAAACAATCAGTGCTAGTGAATGGTGTCACTT
CTGAATCACAACAGGTCATTTCAGGAGTCCCTCAAGGTAGTGTTTTGGGA
CCTTTCATTTTCCTCATATTAATTGGGGATATTGACAAGGAAGTGGTGCA
CAGCTTTCTCAAATCCTTCGCTGATGACACTCGCGCCAAAAAGGAAGTCA
AAACTCTAGAAGATGCTGTCCTACTTCAAAACGATCTTGATAGAATATAT
AAATGGATGACAACAATATGAAGctaaatgatataaaatttgaactCCTG
CGCTATGGAAAGAACCATGAGATCAAGACTCAAACAAGCTATACATCACC
GTCTGGTGTTGAGATTGAAAACAAAGATGTTGTGAAAGACCTTGGAATCC
TGATGGACAGTAATTGCACATTTCAGAAGCAAATTACTACAGTAATCGAA
AAGGCTAAAAACTTAACATCTTGGATCCTGAGAACTTTTTCTTCAAGATC
TTTGAATTGTATGATCgtactacacgctttttcttttataagaataactt
ctataagaatatcagggtgagatttcgggtttaaaacaataggcctattg
tttagaacaatagaaaaataagaataatgctcaccctcaaacaaagtaca
ctattcttataaaaaaaagcgtgtatataaaTCATTGGTGATACCGATAT
TAGAATATTGCTCTGTTCTGTGGAGCCCAAATGCAGTTGGTCTCATTCAG
AGACTTGAAGATATTCAAAAGTCCTTCTTACGAAAGATAAATGGCACCCC
AAACAATTATTGGGAGTgtctaaaacagacaaaaatttaCTCACTTCAAA
GGCGAAGAGAACGCTATAGAATAATGTATGTCTGGAAGGTGATGGAAAAT
ATTGTACCTACTGTAAATGGTATCAAAACCACTGAAAACCCCCGGCTGGG
CCGGATGTGTACACTGTCAATTCCAAagaaccaaacatcaaaatttagag
ACAGCACACTTGCAGTGCAAGGTGCAAAAATTTTTAATGCTATGCCAAAG
AGCATCAGAAACCTCAAAAACATTTCTGTCGATAAATTCAAAAGAGCCCT
GGACACACACCTTAAGTCTATCCCAGATGAACCCCAGACCCATGGATATA
CTGGGTGCAGGAGagctaattcaaattcaataattgacatgaaaaatatc
tgctgAGATTCTTTTTCTCTCGACAGATTGATCACACAGAGGCG Run BLAST on NCBI protein sequence of TCONS_00053782-protein >TCONS_00053782-protein ID=TCONS_00053782-protein|Name=TCONS_00053782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MYVWKVMENIVPTVNGIKTTENPRLGRMCTLSIPKNQTSKFRDSTLAVQG
AKIFNAMPKSIRNLKNISVDKFKRALDTHLKSIPDEPQTHGYTGCRRANS
NSIIDMKNIC Run BLAST on NCBI transcript from alignment at scaffold_233:1345089..1346382 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053782 ID=TCONS_00053782|Name=TCONS_00053782|organism=Clytia hemisphaerica|type=transcript|length=1294bp|location=Sequence derived from alignment at scaffold_233:1345089..1346382 (Clytia hemisphaerica)
CGCCTCTGTGTGATCAATCTGTCGAGAGAAAAAGAATCTcagcagatatt
tttcatgtcaattattgaatttgaattagctCTCCTGCACCCAGTATATC
CATGGGTCTGGGGTTCATCTGGGATAGACTTAAGGTGTGTGTCCAGGGCT
CTTTTGAATTTATCGACAGAAATGTTTTTGAGGTTTCTGATGCTCTTTGG
CATAGCATTAAAAATTTTTGCACCTTGCACTGCAAGTGTGCTGTctctaa
attttgatgtttggttctTTGGAATTGACAGTGTACACATCCGGCCCAGC
CGGGGGTTTTCAGTGGTTTTGATACCATTTACAGTAGGTACAATATTTTC
CATCACCTTCCAGACATACATTATTCTATAGCGTTCTCTTCGCCTTTGAA
GTGAGtaaatttttgtctgttttagacACTCCCAATAATTGTTTGGGGTG
CCATTTATCTTTCGTAAGAAGGACTTTTGAATATCTTCAAGTCTCTGAAT
GAGACCAACTGCATTTGGGCTCCACAGAACAGAGCAATATTCTAATATCG
GTATCACCAATGAtttatatacacgcttttttttataagaatagtgtact
ttgtttgagggtgagcattattcttatttttctattgttctaaacaatag
gcctattgttttaaacccgaaatctcaccctgatattcttatagaagtta
ttcttataaaagaaaaagcgtgtagtacGATCATACAATTCAAAGATCTT
GAAGAAAAAGTTCTCAGGATCCAAGATGTTAAGTTTTTAGCCTTTTCGAT
TACTGTAGTAATTTGCTTCTGAAATGTGCAATTACTGTCCATCAGGATTC
CAAGGTCTTTCACAACATCTTTGTTTTCAATCTCAACACCAGACGGTGAT
GTATAGCTTGTTTGAGTCTTGATCTCATGGTTCTTTCCATAGCGCAGGag
ttcaaattttatatcatttagCTTCATATTGTTGTCATCCATTTATATAT
TCTATCAAGATCGTTTTGAAGTAGGACAGCATCTTCTAGAGTTTTGACTT
CCTTTTTGGCGCGAGTGTCATCAGCGAAGGATTTGAGAAAGCTGTGCACC
ACTTCCTTGTCAATATCCCCAATTAATATGAGGAAAATGAAAGGTCCCAA
AACACTACCTTGAGGGACTCCTGAAATGACCTGTTGTGATTCAGAAGTGA
CACCATTCACTAGCACTGATTGTTTTCTCTCTGTTAGGAAGGACTTTAGC
CACTGTAATAATTTTCCATCTATTcctagtttctttatttttcg Coding sequence (CDS) from alignment at scaffold_233:1345089..1346382 >TCONS_00053782 ID=TCONS_00053782|Name=TCONS_00053782|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_233:1345089..1346382 (Clytia hemisphaerica)
TcagcagatatttttcatgtcaattattgaatttgaattagctCTCCTGC
ACCCAGTATATCCATGGGTCTGGGGTTCATCTGGGATAGACTTAAGGTGT
GTGTCCAGGGCTCTTTTGAATTTATCGACAGAAATGTTTTTGAGGTTTCT
GATGCTCTTTGGCATAGCATTAAAAATTTTTGCACCTTGCACTGCAAGTG
TGCTGTctctaaattttgatgtttggttctTTGGAATTGACAGTGTACAC
ATCCGGCCCAGCCGGGGGTTTTCAGTGGTTTTGATACCATTTACAGTAGG
TACAATATTTTCCATCACCTTCCAGACATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053782-exon-scaffold_233-1491911889:1345089..1346382 | TCONS_00053782-exon-scaffold_233-1491911889:1345089..1346382 | Clytia hemisphaerica | exon |
| TCONS_00053782-exon-scaffold_233-1510915933:1345089..1346382 | TCONS_00053782-exon-scaffold_233-1510915933:1345089..1346382 | Clytia hemisphaerica | exon |
| TCONS_00053782-exon-scaffold_233-1575043694:1345089..1346382 | TCONS_00053782-exon-scaffold_233-1575043694:1345089..1346382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1345089..1346382 . |
Blast
The following BLAST results are available for this feature:
|
