TCONS_00053784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053784
Unique NameTCONS_00053784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053784 ID=TCONS_00053784|Name=TCONS_00053784|organism=Clytia hemisphaerica|type=transcript|length=204bp
NCAACCTAACACAATCCCAAGTGACAGTGACGGTGAcaataaaaggaaaa
agaaaaaagtcactAAAGATGCTGCACCATCTATCCCAAGTCAAGACAGA
CCACCAGAATTATTAGAGACAGACACTGAAGATGTTGTCCTGCTGTCAAC
TCAAGATGCTAAGGATAAAGAGATTAATACAAGAGAAACACAAAACCAGA
ATCA
Run BLAST on NCBI

transcript from alignment at scaffold_233:1353244..1353447

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053784 ID=TCONS_00053784|Name=TCONS_00053784|organism=Clytia hemisphaerica|type=transcript|length=204bp|location=Sequence derived from alignment at scaffold_233:1353244..1353447 (Clytia hemisphaerica)
TGATTCTGGTTTTGTGTTTCTCTTGTATTAATCTCTTTATCCTTAGCATC
TTGAGTTGACAGCAGGACAACATCTTCAGTGTCTGTCTCTAATAATTCTG
GTGGTCTGTCTTGACTTGGGATAGATGGTGCAGCATCTTTagtgactttt
ttctttttccttttattgTCACCGTCACTGTCACTTGGGATTGTGTTAGG
TTGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033945XLOC_033945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053784-exon-scaffold_233-1491911889:1353244..1353447TCONS_00053784-exon-scaffold_233-1491911889:1353244..1353447Clytia hemisphaericaexon
TCONS_00053784-exon-scaffold_233-1510915933:1353244..1353447TCONS_00053784-exon-scaffold_233-1510915933:1353244..1353447Clytia hemisphaericaexon
TCONS_00053784-exon-scaffold_233-1575043694:1353244..1353447TCONS_00053784-exon-scaffold_233-1575043694:1353244..1353447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1353244..1353447 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.12207	2.25999	2.97045	0	2.65206	0	2.47088	0	0	3.86549	0.443289	2.82945	0	0	0	0.985027	1.98655	2.22631	0	0	1.68949	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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