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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053788 ID=TCONS_00053788|Name=TCONS_00053788|organism=Clytia hemisphaerica|type=transcript|length=1971bp
TATATTTGTCAATTTCATTTAATGAATAGTTTTCTTTTAGAGGGTAGGga
aaatttacattttatagACCTTCAAACACcataacaaaaatataaaacga
aaaagaaaaaaatacgtACAAAAAGAAACAAAAATTATAAAATGTAGTAA
AAAATTATATATAAAAAAGGTATTTTAACAAAAAGTACAAAAATATCATT
CTTTCTTTTATACTTTCATCTTCTTTATAAAAAAATACCATATATTTTAT
TTTAATACAAAAATAATATAATAAAAAAATAACGAGAAATACTTTGGAAT
ACAGCGTAATTAAGGAGAGCCAGGTGAAATTGAAGAGTTTGAGGGATGGT
TTCGTtctttcccaaaaaaaatttaagtcgTTCTATTGGCTAATTTTGAG
CCTAACATTTCTAGCCAATAGAATTTGGTTAGTTTCTTTTTGACTTatcc
aaaaacaaaaacaacatacCATGAGACGAAGTAAAGTTCATTACGAAGAA
GCTGAGAATTGCCAATATGTTCCATGgaagaaaaggaaaatgaaaaagcg
tagaaaaattagaaaaaataaaatattgataaggatactttaaacaaaaa
gaaacattattaaaaaaattcatttagaGATCAAAGTCAAAGGCAGCGAG
GTAGTATTTGAGATTCGTGCAGAGTCATAAGAATCATCCAAGAAGGATTT
TAAGGAATAGGGAGTATTGAGCATAAAATACTTTCATGTTAAACGAGAGA
AATGAGAAGAAACAAGTTCCTCATAGAAAAAAAAGCAATACTGGAAATTC
TTAGCCATGGGCTTAGAAAATTAGTCGTTGTAAGAGATTCTTTAAAAGTA
taaaacatttataaaaaaataaaacttgtgtgtctctttttcttactttt
cacGGTACTGCATTCCACATTatattttggtaaaaaattcatcgtgtttt
cattttcgtgatttttcgtACACGAAaccataaaaatgtttttcttttgt
atgCACATTATTTGATGGGGATAGCTACTCGTTTCAACGAGATTGTCGAC
AATATTTATAACATATTCTTTAAATgatttcaaccatttttttgaaagcg
ATTTATCAAAATCTTGGCGAGATaagtggtcagtaaaatgtccaCATGCA
TGTCCAGTATCGCGTGTTGCGTTGTAATAGTTTTTCAAACGTAATGTGTG
TTATTACTTGTATATTTAACATGTTTCTGAGCTTTTGGGTCGCCGTAAAC
TATGATTTACCTGGTCAGTTGATTAAAATCGAACGTTCAGAATCTTCGGT
TCGTTCAGCATTAAGCTTTGTTTACACAACGAAGTATCGCTTCGACATTG
TTAGGCGTCCTGTGTTAATTAATTAAGGCTTCATATACACGATGTAAAAA
CCTTTATCCACAATCTTTTGACACCGCTGCATAGGGTAACAACTCCTCTt
ctaactttttgttttgaacaatAAAAACGCATGCGCATGATCAAATCATG
TAAGCGCCAAAGAATGTTGCCGACTCGGCATACGATATAAGTGGCATGTG
TGCCGGATCGACACCAATCGCTAGCTGGTCACCCTCCATGAGTCTAAAAA
CACCATTTGCACTGGTCGTATAAAAACCCTGGCCGTTCGGCACATGGTTG
GGTTTCGTGGAAAAACCACGTAAAATAATGTATTTTGTGCTATCCGGGTT
ATATCTGTGTTTACGGAAATGATAAACGTAATGACATAAATGTGGGTCGA
TCCCTTCTTCGTCAGCTTGGAAAAACACTTGAGAATAAATGTGATAAAAC
CCATATTCTTTGATAGTGATAATTCCTTTCTTGAATTGGATTTTTCCGTT
GATGGTTGTGTAGCTTCCTTTCTCGTCAAAGCTGGTTAGAATACCTTTCG
GCATACCATCCAGGGGAGATAGGAATTGATAACCGCTCGCATGGACTACA
GGCAGGTTCGGAATCTAAAAG Run BLAST on NCBI transcript from alignment at scaffold_234:2171..4537+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053788 ID=TCONS_00053788|Name=TCONS_00053788|organism=Clytia hemisphaerica|type=transcript|length=2367bp|location=Sequence derived from alignment at scaffold_234:2171..4537+ (Clytia hemisphaerica)
TATATTTGTCAATTTCATTTAATGAATAGTTTTCTTTTAGAGGGTAGGga
aaatttacattttatagACCTTCAAACACcataacaaaaatataaaacga
aaaagaaaaaaatacgtACAAAAAGAAACAAAAATTATAAAATGTAGTAA
AAAATTATATATAAAAAAGGTATTTTAACAAAAAGTACAAAAATATCATT
CTTTCTTTTATACTTTCATCTTCTTTATAAAAAAATACCATATATTTTAT
TTTAATACAAAAATAATATAATAAAAAAATAACGAGAAATACTTTGGAAT
ACAGCGTAATTAAGGAGAGCCAGGTGAAATTGAAGAGTTTGAGGGATGGT
TTCGTtctttcccaaaaaaaatttaagtcgTTCTATTGGCTAATTTTGAG
CCTAACATTTCTAGCCAATAGAATTTGGTTAGTTTCTTTTTGACTTatcc
aaaaacaaaaacaacatacCATGAGACGAAGTAAAGTTCATTACGAAGAA
GCTGAGAATTGCCAATATGTTCCATGgaagaaaaggaaaatgaaaaagcg
tagaaaaattagaaaaaataaaatattgataaggatactttaaacaaaaa
gaaacattattaaaaaaattcatttagaGATCAAAGTCAAAGGCAGCGAG
GTAGTATTTGAGATTCGTGCAGAGTCATAAGAATCATCCAAGAAGGATTT
TAAGGAATAGGGAGTATTGAGCATAAAATACTTTCATGTTAAACGAGAGA
AATGAGAAGAAACAAGTTCCTCATAGAAAAAAAAGCAATACTGGAAATTC
TTAGCCATGGGCTTAGAAAATTAGTCGTTGTAAGAGATTCTTTAAAAGTA
taaaacatttataaaaaaataaaacttgtgtgtctctttttcttactttt
cacGGTACTGCATTCCACATTatattttggtaaaaaattcatcgtgtttt
cattttcgtgatttttcgtACACGAAaccataaaaatgtttttcttttgt
atgCACATTATTTGATGGGGATAGCTACTCGTTTCAACGAGATTGTCGAC
AATATTTATAACATATTCTTTAAATgatttcaaccatttttttgaaagcg
ATTTATCAAAATCTTGGCGAGATaagtggtcagtaaaatgtccaCATGCA
TGTCCAGTATCGCGTGTTGCGTTGTAATAGTTTTTCAAACGTAATGTGTG
TTATTACTTGTATATTTAACATGTTTCTGAGCTTTTGGGTCGCCGTAAAC
TATGATTTACCTGGTCAGTTGATTAAAATCGAACGTTCAGAATCTTCGGT
TCGTTCAGCATTAAGCTTTGTTTACACAACGAAGTATCGCTTCGACATTG
TTAGGCGNAAGAATCTTCGGCGTTCGTTCAGTATTAAGCTTTGTTTACAC
AACGAAATATCGCTTCGACATTGTTAGGCGTCCTGTGTTAATTAATTAAG
GCTTCATATACACGATGTAAAAACCTTTATCCACAATCTTTTGACACCGC
TGCATAGGGTAACAACTCCTCTtctaactttttgttttgaacaatAAAAA
CGCATGCGCATGATCAAATCATGTAAGCGCCAAAGAATGTTGCCGACTCG
GCATACGATATAAGTGGCATGTGTGCCGGATCGACACCAATCGCTAGCTG
GTCACCCTCCATGAGTCTAAAAACACCATTTGCACTGGTCGTATAAAAAC
CCTGGCCGTTCGGCACATGGTTGGGTTTCGTGGAAAAACCACGTAAAATA
ATGTATTTTGTGCTATCCGGGTTATATCTGTGTTTACGGAAATGATAAAC
GTAATGACATAAATGTGGGTCGATCCCTTCTTCGTCAGCTTGGAAAAACA
CTTGAGAATAAATGTGATAAAACCCATATTCTTTGATAGTGATAATTCCT
TTCTTGAATTGGATTTTTCCGTTGATGGTTGTGTAGCTTCCTTTCTCGTC
AAAGCTGGTTAGAATACCTAAGTGTTGAAGTTAGAACGTGTTATAACAAA
TGAAAACTTCCAGGTAAAACAAGAGACAAGAAAACAGTAAATTATGTTAT
AAAAAGGTGTTAACTTCTAAATAAAGTCAACCTAAATGCCGActgtcaac
aacaaaaaaagagaATTAGACCAAAGTTTCCAAGACACAAGTTTTTGTAA
ACTTAAACTCTCCCATTACGGCGTTAGGGTTGATAGGAGCAGCAAAGCGC
AAGCTTATAGCATGCAGTTTAAAGGCAGTTTCACAGAGTTACAAGCCATA
ACTTTTTTAATTGGTAACACAAAATTCAATCTGTACATACCTTTCGGCAT
ACCATCCAGGGGAGATAGGAATTGATAACCGCTCGCATGGACTACAGGCA
GGTTCGGAATCTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053788-exon-scaffold_234-1491911889:2171..3516 | TCONS_00053788-exon-scaffold_234-1491911889:2171..3516 | Clytia hemisphaerica | exon |
| TCONS_00053788-exon-scaffold_234-1510915933:2171..3516 | TCONS_00053788-exon-scaffold_234-1510915933:2171..3516 | Clytia hemisphaerica | exon |
| TCONS_00053788-exon-scaffold_234-1575043694:2171..3516 | TCONS_00053788-exon-scaffold_234-1575043694:2171..3516 | Clytia hemisphaerica | exon |
| TCONS_00053788-exon-scaffold_234-1491911889:3590..4133 | TCONS_00053788-exon-scaffold_234-1491911889:3590..4133 | Clytia hemisphaerica | exon |
| TCONS_00053788-exon-scaffold_234-1510915933:3590..4133 | TCONS_00053788-exon-scaffold_234-1510915933:3590..4133 | Clytia hemisphaerica | exon |
| TCONS_00053788-exon-scaffold_234-1575043694:3590..4133 | TCONS_00053788-exon-scaffold_234-1575043694:3590..4133 | Clytia hemisphaerica | exon |
| TCONS_00053788-exon-scaffold_234-1491911889:4457..4537 | TCONS_00053788-exon-scaffold_234-1491911889:4457..4537 | Clytia hemisphaerica | exon |
| TCONS_00053788-exon-scaffold_234-1510915933:4457..4537 | TCONS_00053788-exon-scaffold_234-1510915933:4457..4537 | Clytia hemisphaerica | exon |
| TCONS_00053788-exon-scaffold_234-1575043694:4457..4537 | TCONS_00053788-exon-scaffold_234-1575043694:4457..4537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:2171..4537 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006052 | TNF_dom |
| IPR008983 | Tumour_necrosis_fac-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005164 | tumor necrosis factor receptor binding |
| GO:0005515 | protein binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006955 | immune response |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006955 |
immune response |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0005164 |
tumor necrosis factor receptor binding |
Blast
The following BLAST results are available for this feature:
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