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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053792 ID=TCONS_00053792|Name=TCONS_00053792|organism=Clytia hemisphaerica|type=transcript|length=4830bp
CCATTGTGTCTTTTTACAAATTTAATTAATACTACATGAAAGCAAGCTGG
TTTTTACCAATCTTTATGCATTGAGATAAATTGCACCACTCTCATGAGAG
TATTGACTTATTTAGTAATGATGTCACAAGTTATGTGATTAGCTTCTTAC
ATGGAAACCAGGCTGCTTTCCTGATGACCAGTTGATTGTTATTATATTGC
TGCTAATGGTGAaatgagaagaaaaattacagaaaatcaTAGGAGCGGAA
AATTTGAAGGGAATTTTATAATACCTCTATTATGACGACACTTATTGACG
CATTAAAAAGCTATTCAGTCATTTTTTGATGCATtcattttgtttctttc
taatGGACATACCCTGCTTTCGACTTGTATAAAAAGTTTTGtgttgagaa
aattattttcagtgacaAAAAAATTCGCATAGCATAcactgtatatattt
ttaagaaaactaatttattaatacaaatttttatagagatttaaagaaat
tatttagAGAAGAAAGAAGTTATGAAATTGATTCTACTTGTTTTTGGCTT
AATCCAAGCCCATGCATCAGTCCTTGATGTTTTTGCTTTCACCAATGGAC
ATGAGCCACGAGTTGCCATGAACTGTGATCATGTACCATTCTACATTGAC
TTGAAAACCGGATCATGGGTTGAAGACAGCGAAGGACTTGAAATTTGTGA
TCACAACAAAGAAGTTGTCAAGAAATACTGTCAAAAGATGTACCCCAAAC
TGAACATCACCAACATTGTTGAAGCCAATACACCACAAACCTTTAACAAC
TGGTGCCGATCCGGACAATCCCAATGTACTGAAGCCAAAGAAGTTGTTCC
ATACAGATGTTTGGTCAATGAATACGAAGCTGATGCTCTTATGGTTCCAG
ATGGTTGTAAATTTGATCACATCCATGACCCAAACCAGTGTTTGAGCCAT
GACCaatggaaagaaaaagcctCCAAAAAATGTGACAGCCAatacaaaat
gaaattgaaggaCTACGGAATCTTGCTCTCATGCGGTACTGATGTCTTCA
CCGGTGTTGAATTTGTCTGCTGCCCAGAGAAAATGCCAGAAACCAAACCA
GCCCCAAGTGCTGCTACCCCAAAAATCACCAAGGATGTCTTCCAAGCTGC
TGTTGCCAAATTCTTGCAATACTTACCAAGTGTCACCAAGGGATGTGACA
GAAGCACCTATTTGACCAAACAAGCCTCCATGGGAGAACACCACCAAAGC
CAAATCGCTGCTGTTGTCGATGAATGGGACAATGCTGAGAAGAGATACAA
CGACTTGAAGAAAAAAGACCCTGTTGTTgctgaagaaaaaatgaaacGAA
CCTTGGAAGTTTTCCGACAAACTCTTGCTGCCCTTGAACAAGAGTCCAAG
GACGAGAAAGAACGATTGAGAGTCGAACATGCTGACTGTATCAACACCCA
AATCTCCAAGGACAAGAGAGATGCCATGATCAACTATTTGGCCTCCATCC
AAAAGGAACCTGCCAATGCTGACGAAATCTTGGGAGCTGTCCGCAAATTC
ATCCAAGTCTGCGAACACGACAGAGTCCACAGCCTCCGACACTTTGAACA
TGTTCGCCGACGAAATGCAAGCGAAGCCGATTCCATCCGATCTGAATTAT
TGCAACACTTAAAGGGATTGAACAAAGTTGTCAATGAAAGCATGGCCCTC
TTGAACTACTTGCCAACTATTGCCAAGAAATTCGGACTCACTGGAAACAC
TGCTGTTTTGAAACCAAAAACTGAATTACCAGAAATCAAGCACGAAGACC
ATGTCCATGAACGTGTCAAAGAAATCCTTGAAAACAACAAACACCTTGAG
GAAGATGATGATGAAGAcgacgatgatgatgatgaagaatCTATTTTCGT
CACATCCAAACCCGTCCCATTGAAGAAATTATTGGCCGctgccaaaatca
aaaatacCGTCGAGAAAACACCCACTATCAAATCTTTGGGTAAAATGGCT
GCCAAGATTAAAAACGAATATGATGACTCCGATGATGAGGATGATGATAA
TGACATCATTGCCGATGCTTTCCCAGTCCCACAAAAAGACGCACCCACCC
ACCACAAAGGAAAGAAGGAACATCACCGATCACCGATGGTTATTAACATC
ATCTTGGGATTGTGTTGTGGTATCTTGGTCGTCATGTTGATTGTCGTTAT
CGTCATGGTCGTCCAACGCCGACGTGTCGCCCACACTCGAGTCGTCATTG
CCGAAAATAATGATGACCGTGAGCATTTGATTCAAATgcaaaaaagtgga
tttgaaaatccAACCTACAAATTCTTTTATTattaaatttttcctttttt
aataataattgGATTTCGAATGATGTATGTGATTTAAGAACAAACACGAC
Atgagaaagaaattttatttgttacttattttggttattttggtaaaaaa
aatctACATATGTAACCAACCTTGGAAAGATTTAGTGAGAGAAAATGTAG
atagattgaaaaaaaagcaCATTTTCTGTAAGAAAATTGGTGTTGTCATC
ACACAAAGTATCGTTGTTGCCACTACTattattttttgtagaaaaaaatt
tttgtaacaATGAGATCGAATTATAGATGAGTTGTAGGTCGACTTGGCTC
ACTCGATTTTTCGATTACTTTTAAAGTTTCTGAAATTCCCAGTTCGCAAA
CAGGATTTTGTATCTTTTATCCCTCTTTTGTTGtacagaaaattgaaaat
tccccTTGGAATTCTTTCTCAATACAATTCACTTTAAGAAGGTCTCttgt
ttttaccattttactttattaaaagaaaaatatacctTCGTTGTTCTAag
tgtaaattttttgattttttatatgatgtaaattttaagtattttttttg
tGCCCTTTATTATGCCATGCTACCGTTCCACATAACTACGATCTGACGAC
ATTGACATTTTGACCAAGACTTAAATAGAATTGACTTTCTGACGAAAACA
TGACTTCGCGATTTAGTACCTGACTTACAAGACAAGACTAATTAAGACTG
TTACTTCAATGAAACACAGACCTGTGAGGACTGTTTTTTTAACTACAATA
CTTTTGAGACAGGACAGACAAAAAAACTTCCTTCGACTTCTATCGTTacc
acaaagaaaaaaagatttgaggGGAGGTATCAGGAGGCATCTCAAACAAC
TAAAAAGGAGGTCTAGATAAAGAAAtaggaatttcattttcatttgatgC
ATCAATATCTATCCATCAAACGACGACAAGATAATAACAAAACATCAACA
ttctttttatagtttttttatatagagagaaaatgtttttgtcaAGTTAA
TTAAAAAGCTTTTCTTTTAAGACGCATTTCCTGACCCCATGTTTCGAAAT
AACCTCTTTGTAAAGACGAAATACCGACCGACATACACGATAACAAAAGA
ACTACtctcttttttattagaactctattttacaagaaaaatctggcTCT
AAATCACCACAAAATTGGAAGACAAAAGCTTTTTGTTGACTTTCATAAAG
TATAAATTTGAAGTCTCCCAACctcaattttggtgaaaaagaaatatgaC
CAATCTCCTGAAGCTTGATTCTTTTAGAGAAAGACCTAACGACAGAACAA
AAGACATTGACTGCacaaaacaatataatattccACCCACACCTCCTGAT
TACTTTAAACTTTGTTCCTTCACTAATTATGTTACACATCATATTACCCA
TCATctcttgttttttattattaattattttggtattttataaTAAATGT
TTTAAAAGATGTCTTTTTTAAATTGGAGGATAGGTACTGTAATGTGAAAT
TGGTCTATAATAAGGTAACTATAGTAATCAAACGCCTTTGAACTTAATTG
GAAtgttggttctttcaaaataTAACCAGCCTACACCTTCCTTCATTTTT
GAAAAGCATTCTactgtctttttttttttaattcttatttattttgttaa
taACAGCTCCTTTTTGCTCTTCTAAGATATCCTGCCAGACATCCTGGAAA
TTCAGCATGATTTCTCGGTGATGTTCTCATAGTACAATACCTAAGATCTA
AAATCTTCGTGATATTCGttgtaaaattcaaatttacgtcactttttcta
caaaatgtcaatttttatcaGCTTTTTTCGAGCATTTGTAATGACGTTTT
TAACTAGTGAAAAAGTGTCGTCTGTTATATTCAGGCGAATATCACGTGTT
CTAGTCTTTTACAGGAATCTTAACAAACAACTGACCCtaataattttaca
ttttaattttGCTTTGAATCTGATTAACGACTgtcatttcatttttaata
tATATAATGATTCCTTTTGTTCAAGATTTTTCGAAAGTTTGAAACACCTG
GTAAACACACCTACCTACTATGATAATAAGTTCGGTATCTCAATTTTGTC
ATATTTGGCACTCAACTGACATTAATCATTATGTCATAAATTGCGATTCA
TTATGACACATAATGACGTTTCAGTCTTGATTATGACGTAAGAGATACCC
TACTAATTATCGCCAGTAGGAGTTTGTGTTTGTCTATTCGACTAATTtaa
taattgataaaataaaaaggagctggatttttttcttaatccgatttttg
tcaattttctttgtctttctGAATATCCCTGTCTTTTCGTATACACCCAA
TGTGTTCATAtggatggagtttttacaagattttattttcatttattttt
ctttagttctttTAACTCGTCCATCCTTTGAAAGGCTAGCTTTCTCTCGT
ATGATAggagaattgttttttcaaaccgTG Run BLAST on NCBI transcript from alignment at scaffold_234:109419..115311+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053792 ID=TCONS_00053792|Name=TCONS_00053792|organism=Clytia hemisphaerica|type=transcript|length=5893bp|location=Sequence derived from alignment at scaffold_234:109419..115311+ (Clytia hemisphaerica)
CCATTGTGTCTTTTTACAAATTTAATTAATACTACATGAAAGCAAGCTGG
TTTTTACCAATCTTTATGCATTGAGATAAATTGCACCACTCTCATGAGAG
TATTGACTTATTTAGTAATGATGTCACAAGTTATGTGATTAGCTTCTTAC
ATGGAAACCAGGCTGCTTTCCTGATGACCAGTTGATTGTTATTATATTGC
TGCTAATGGTGAaatgagaagaaaaattacagaaaatcaTAGGAGCGGAA
AATTTGAAGGGAATTTTATAATACCTCTATTATGACGACACTTATTGACG
CATTAAAAAGCTATTCAGTCATTTTTTGATGCATtcattttgtttctttc
taatGGACATACCCTGCTTTCGACTTGTATAAAAAGTTTTGtgttgagaa
aattattttcagtgacaAAAAAATTCGCATAGCATAcactgtatatattt
ttaagaaaactaatttattaatacaaatttttatagagatttaaagaaat
tatttagAGAAGAAAGAAGTTATGAAATTGATTCTACTTGTTTTTGGCTT
AATCCAAGCCCATGCATCAGTCCTTGATGTTTTTGCTTTCACCAATGGAC
ATGAGCCACGAGTTGCCATGAACTGTGATCATGTACCATTCTACATTGAC
TTGAAAACCGGATCATGGGTTGAAGACAGCGAAGGACTTGAAATTTGTGA
TCACAACAAAGAAGTTGTCAAGAAGTaagttttttcatttcttatttaag
aaaattttgacatttttcaatgtTTCTTACCTTGGCCTGAATTAATATGG
TTATCcctttttttgtgatttcaatAACATTCGACAGACTGATATGGTTG
ATttcttttaaatgattttttttgactgtgcCCCAGAATCAGTAAGTCTT
GTATTGCTCAAAATACTCATAATTTTTGTCCATCCTTGATCTTCAGATAC
TGTCAAAAGATGTACCCCAAACTGAACATCACCAACATTGTTGAAGCCAA
TACACCACAAACCTTTAACAACTGGTGCCGATCCGGACAATCCCAATGTA
CTGAAGCCAAAGAAGTTGTTCCATACAGATGTTTGGTCAATGAATACGAA
GCTGATGCTCTTATGGTTCCAGATGGTTGTAAATTTGATCACATCCATGA
CCCAAACCAGTGTTTGAGCCATGACCaatggaaagaaaaagcctCCAAAA
AATGTGACAGCCAatacaaaatgaaattgaaggaCTACGGAATCTTGCTC
TCATGCGGTACTGATGTCTTCACCGGTGTTGAATTTGTCTGCTGCCCAGA
GAAAATGCCAGAAACCAAACCAGCCCCAAGTGCTGCTACCCCAAAAATCA
CCAAGGATGTCTTCCAAGCTGCTGTTGCCAAATTCTTGCAATACTTACCA
AGTGTCACCAAGGGATGTGACAGAAGCACCTATTTGACCAAACAAGCCTC
CATGGGAGAACACCACCAAAGCCAAATCGCTGCTGTTGTCGATGAATGGG
ACAATGCTGAGAAGAGATACAACGACTTGAAGAAAAAAGACCCTGTTGTT
gctgaagaaaaaatgaaacgtAAGGAGAGTTATGATTTGTGAGAATTTGC
TTCATGCACTGTGTTTAGATTACTTTATTTACTGTGTCCACTAGCAAGGA
TGAAACCTACAACATTTTAATGAGTTTTCTTTGTATTCTTTTCAGGAACC
TTGGAAGTTTTCCGACAAACTCTTGCTGCCCTTGAACAAGAGTCCAAGGA
CGAGAAAGAACGATTGAGAGTCGAACATGCTGACTGTATCAACACCCAAA
TCTCCAAGGACAAGAGAGATGCCATGATCAACTATTTGGCCTCCATCCAA
AAGGAACCTGCCAATGCTGACGAAATCTTGGGAGCTGTCCGCAAATTCAT
CCAAGTCTGCGAACACGACAGAGTCCACAGCCTCCGACACTTTGAACATG
TTCGCCGACGAAATGCAAGCGAAGCCGATTCCATCCGATCTGAATTATTG
CAACACTTAAAGGGATTGAACAAAGTTGTCAATGAAAGCATGGCCCTCTT
GAACTACTTGCCAACTATTGCCAAGAAATTCGGACTCACTGGAAACACTG
CTGTTTTGAAACCAAAAGTGAGTGTTGTTTTTTCTTGGGAAATTTTTGTA
GGAATTGAGGATGATGAAAAGATTTCTGAGTGTATTAAGAGAAAGGAGAA
CGTCCCTACTTTGTATTTTAAAGTTTGTgttttttagaaaactttttaac
acctttttgttcgtttttgaagaattttagtGTGAATTCATGTGTTATTT
TAATGTTGTTTATATCTCTACAGACTGAATTACCAGAAATCAAGCACGAA
GACCATGTCCATGAACGTGTCAAAGAAATCCTTGAAAACAACAAACACCT
TGAGGTACATTTTCTAATCGTGATAAGCTTTTTTATCACCTTTTTCTGGC
ATTTAGATACACCtcagaaattttaaaacttttcgtTAAATGGTATAAGG
AGAAAAAATTAGCTTTCCAAGCTTTTTCTGATTCgagaatttttaatttc
ttactAAAATTATCTGCTTGGATTCCTTGAATTTTTAATCCATGACTTAA
AAATTAATCGATTTTTTGACGAGAGGTTATAACCCCTAATTTATACTCTG
TTCACTCCTCAAAACGTCACGACAAGGTCAAGTTTTGTAAGAATTTATGc
aatttagaattttcaaaattcatgatGGAGATTTCTCTTAATCCTAGACT
TTTCCTTCCGTAAAAAGCTTCTTGATGAATTCAATTCTTAGAACCAATGA
AGAGCTAGTATTTCGATTTTCTATCCTTTTCACTTTGTTCTTGGTTGCAC
ACACTAAACTGTGTAATTCTTAAAGTCTAAAATTTAATCATGGTTCGTGT
GTCCATTTTTTAGGAAGATGATGATGAAGAcgacgatgatgatgatgaag
aatCTATTTTCGTCACATCCAAACCCGTCCCATTGAAGAAATTATTGGCC
GctgccaaaatcaaaaatacCGTCGAGAAAACACCCACTATCAAATCTTT
GGGTAAAATGGCTGCCAAGATTAAAAACGAATATGATGACTCCGATGATG
AGGATGATGATAATGACATCATTGCCGATGCTTTCCCAGTCCCACAAAAA
GACGCACCCACCCACCACAAAGGAAAGAAGGAACATCACCGATCACCGAT
GGTTATTAACATCATCTTGGGATTGTGTTGTGGTATCTTGGTCGTCATGT
TGATTGTCGTTATCGTCATGGTCGTCCAACGCCGACGTGTCGCCCACACT
CGAGTCGTCATTGCCGAAAATAATGATGACCGTGAGCATTTGATTCAAAT
gcaaaaaagtggatttgaaaatccAACCTACAAATTCTTTTATTattaaa
tttttccttttttaataataattgGATTTCGAATGATGTATGTGATTTAA
GAACAAACACGACAtgagaaagaaattttatttgttacttattttggtta
ttttggtaaaaaaaatctACATATGTAACCAACCTTGGAAAGATTTAGTG
AGAGAAAATGTAGatagattgaaaaaaaagcaCATTTTCTGTAAGAAAAT
TGGTGTTGTCATCACACAAAGTATCGTTGTTGCCACTACTattatttttt
gtagaaaaaaatttttgtaacaATGAGATCGAATTATAGATGAGTTGTAG
GTCGACTTGGCTCACTCGATTTTTCGATTACTTTTAAAGTTTCTGAAATT
CCCAGTTCGCAAACAGGATTTTGTATCTTTTATCCCTCTTTTGTTGtaca
gaaaattgaaaattccccTTGGAATTCTTTCTCAATACAATTCACTTTAA
GAAGGTCTCttgtttttaccattttactttattaaaagaaaaatatacct
TCGTTGTTCTAagtgtaaattttttgattttttatatgatgtaaatttta
agtattttttttgtGCCCTTTATTATGCCATGCTACCGTTCCACATAACT
ACGATCTGACGACATTGACATTTTGACCAAGACTTAAATAGAATTGACTT
TCTGACGAAAACATGACTTCGCGATTTAGTACCTGACTTACAAGACAAGA
CTAATTAAGACTGTTACTTCAATGAAACACAGACCTGTGAGGACTGTTTT
TTTAACTACAATACTTTTGAGACAGGACAGACAAAAAAACTTCCTTCGAC
TTCTATCGTTaccacaaagaaaaaaagatttgaggGGAGGTATCAGGAGG
CATCTCAAACAACTAAAAAGGAGGTCTAGATAAAGAAAtaggaatttcat
tttcatttgatgCATCAATATCTATCCATCAAACGACGACAAGATAATAA
CAAAACATCAACAttctttttatagtttttttatatagagagaaaatgtt
tttgtcaAGTTAATTAAAAAGCTTTTCTTTTAAGACGCATTTCCTGACCC
CATGTTTCGAAATAACCTCTTTGTAAAGACGAAATACCGACCGACATACA
CGATAACAAAAGAACTACtctcttttttattagaactctattttacaaga
aaaatctggcTCTAAATCACCACAAAATTGGAAGACAAAAGCTTTTTGTT
GACTTTCATAAAGTATAAATTTGAAGTCTCCCAACctcaattttggtgaa
aaagaaatatgaCCAATCTCCTGAAGCTTGATTCTTTTAGAGAAAGACCT
AACGACAGAACAAAAGACATTGACTGCacaaaacaatataatattccACC
CACACCTCCTGATTACTTTAAACTTTGTTCCTTCACTAATTATGTTACAC
ATCATATTACCCATCATctcttgttttttattattaattattttggtatt
ttataaTAAATGTTTTAAAAGATGTCTTTTTTAAATTGGAGGATAGGTAC
TGTAATGTGAAATTGGTCTATAATAAGGTAACTATAGTAATCAAACGCCT
TTGAACTTAATTGGAAtgttggttctttcaaaataTAACCAGCCTACACC
TTCCTTCATTTTTGAAAAGCATTCTactgtctttttttttttaattctta
tttattttgttaataACAGCTCCTTTTTGCTCTTCTAAGATATCCTGCCA
GACATCCTGGAAATTCAGCATGATTTCTCGGTGATGTTCTCATAGTACAA
TACCTAAGATCTAAAATCTTCGTGATATTCGttgtaaaattcaaatttac
gtcactttttctacaaaatgtcaatttttatcaGCTTTTTTCGAGCATTT
GTAATGACGTTTTTAACTAGTGAAAAAGTGTCGTCTGTTATATTCAGGCG
AATATCACGTGTTCTAGTCTTTTACAGGAATCTTAACAAACAACTGACCC
taataattttacattttaattttGCTTTGAATCTGATTAACGACTgtcat
ttcatttttaatatATATAATGATTCCTTTTGTTCAAGATTTTTCGAAAG
TTTGAAACACCTGGTAAACACACCTACCTACTATGATAATAAGTTCGGTA
TCTCAATTTTGTCATATTTGGCACTCAACTGACATTAATCATTATGTCAT
AAATTGCGATTCATTATGACACATAATGACGTTTCAGTCTTGATTATGAC
GTAAGAGATACCCTACTAATTATCGCCAGTAGGAGTTTGTGTTTGTCTAT
TCGACTAATTtaataattgataaaataaaaaggagctggatttttttctt
aatccgatttttgtcaattttctttgtctttctGAATATCCCTGTCTTTT
CGTATACACCCAATGTGTTCATAtggatggagtttttacaagattttatt
ttcatttatttttctttagttctttTAACTCGTCCATCCTTTGAAAGGCT
AGCTTTCTCTCGTATGATAggagaattgttttttcaaaccgTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053792-exon-scaffold_234-1491911889:109419..110142 | TCONS_00053792-exon-scaffold_234-1491911889:109419..110142 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1510915933:109419..110142 | TCONS_00053792-exon-scaffold_234-1510915933:109419..110142 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1575043694:109419..110142 | TCONS_00053792-exon-scaffold_234-1575043694:109419..110142 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1491911889:110365..110987 | TCONS_00053792-exon-scaffold_234-1491911889:110365..110987 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1510915933:110365..110987 | TCONS_00053792-exon-scaffold_234-1510915933:110365..110987 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1575043694:110365..110987 | TCONS_00053792-exon-scaffold_234-1575043694:110365..110987 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1491911889:111114..111535 | TCONS_00053792-exon-scaffold_234-1491911889:111114..111535 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1510915933:111114..111535 | TCONS_00053792-exon-scaffold_234-1510915933:111114..111535 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1575043694:111114..111535 | TCONS_00053792-exon-scaffold_234-1575043694:111114..111535 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1491911889:111742..111822 | TCONS_00053792-exon-scaffold_234-1491911889:111742..111822 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1510915933:111742..111822 | TCONS_00053792-exon-scaffold_234-1510915933:111742..111822 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1575043694:111742..111822 | TCONS_00053792-exon-scaffold_234-1575043694:111742..111822 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1491911889:112332..115311 | TCONS_00053792-exon-scaffold_234-1491911889:112332..115311 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1510915933:112332..115311 | TCONS_00053792-exon-scaffold_234-1510915933:112332..115311 | Clytia hemisphaerica | exon |
| TCONS_00053792-exon-scaffold_234-1575043694:112332..115311 | TCONS_00053792-exon-scaffold_234-1575043694:112332..115311 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:109419..115311 + |
Blast
BLAST of TCONS_00053792 vs. Swiss-Prot (Human)
Match: APLP1 (Amyloid-like protein 1 OS=Homo sapiens GN=APLP1 PE=1 SV=3) HSP 1 Score: 192.2 bits (487), Expect = 2.240e-50 Identity = 130/459 (28.32%), Postives = 218/459 (47.49%), Query Frame = 3
Query: 609 RVAMNCDHVPFYIDLKTGSWVEDSEGLEICDHNKEVVKKYCQKMYPKLNITNIVEANTPQTFNNWCRSGQS-QCTEAK-EVVPYRCLVNEYEADALMVPDGCKFDHIHDPNQCLSHDQWKEKASKKCDSQYKMKLKDYGILLSCGTDVFTGVEFVCCPEKMPETKPAPSAAT---------------------------PKITKDVF----QA---------------AVAKFLQYLPSVTKGCD-----------RSTYLTKQASMGEHHQSQIAAVVDEWDNAEKRYNDLKKKDPVVAEEKMKRTL-EVFRQTLAALEQESKDEKERLRVEHADCINTQISKDKRDAMINYLASIQKEPANADEILGAVRKFIQVCEHDRVHSLRHFEHVRRRNASEADSIRSELLQHLKGLNKVVNESMALLNYLPTIAKKFGLTGNTAVLKPKTELPEIKHEDHV 1805
+VA C + + DL+TG W D + C + + V +YC++MYP+L I + +A WC +S C +VVP+RCL E+ ++AL+VP+GC+F H +QC S + ++A + C SQ + L G+LL CG+D F GVE+VCCP P P PS P+ D F QA AV + P T G D +L + + E QI V+ EW A+ + +L K D ++ L E F+ L LE++ E++RL HA + I+ +R A+ +LA++Q +P A+ +L A+R++++ + ++ H+LRH++HV + +A +R ++ HL+ + + VN+S+ LL+ P +A++ L+P+ + E+ H +H+
Sbjct: 55 QVAGLCGRLTLHRDLRTGRWEPDPQRSRRCLRDPQRVLEYCRQMYPELQIARVEQATQAIPMERWCGGSRSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCRFLHQERMDQCESSTRRHQEAQEACSSQ-GLILHGSGMLLPCGSDRFRGVEYVCCP---PPGTPDPSGTAVGDPSTRSWPPGSRVEGAEDEEEEESFPQPVDDYFVEPPQAEEEEETVPPPSSHTLAVVGKVTPTPRPTDGVDIYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKAD--------RQALNEHFQSILQTLEEQVSGERQRLVETHATRVIALINDQRRAALEGFLAALQADPPQAERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVHTHLQVIEERVNQSLGLLDQNPHLAQE---------LRPQIQ--ELLHSEHL 490
The following BLAST results are available for this feature:
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