TCONS_00053799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053799
Unique NameTCONS_00053799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053799 ID=TCONS_00053799|Name=TCONS_00053799|organism=Clytia hemisphaerica|type=transcript|length=3317bp
CTTTtgtcatcatattttatgaGAGTGTAGTATTGGTTTCTTGGTGATGC
TTTAATCTGTTTGAATGATCTGGTTTGGACAAGACGATGTACAGTTTTCA
ACAAATTATGAACCAATCGGACTCGTACATCACTTGGGTGAACAGTCAac
tgggtaaacgagacaaaagtCGTCACGTGAAAGATCTTTCCAAAGATATG
AGGGATGGTGTGGTCTTCTTGCAGCTGGTTGAAGTCATTAGCGATTCAGA
GCAACAAATATTGGATCATTCACAACTTTCGATTAACGATATGCGATACA
ACTTGAACAACGTTTTGCAATTCTTATCCAACAACAATGTCAGGGTTCAC
CACATCTTACCAAAAGAAATCATCGAGGGAAATCTAAAGACCACCATGAG
ATTGATTCTCGCCCTTGCCGCCCATTTCAAACCAGATTCCTTTAACTATA
ACGCCCTAAACAATAACACGAGTACGCCCTTAAAGACCAACACAAGTACG
CCCGTCAGTAAAAGCACGAAGAAGAAATCTATGCAAAGAGCACCATCACT
CGTTTCGCTCGCTTCAGAAGCGGCCGCTTCACTAGCTGAAGCGAGCAAAA
ATGCGTCGAAAGGCGGGTCGACTTCAAGAAGTAGCAGAATCAGGAAGCAG
CAATTATTCGACAGCGTTCCACCGAAAACAAAACATGTATCTCAACGCCA
CCAGCAATCGTCCAATCAGTATCAAGCTTCCAAAAGCTTCACAATGCCTT
CATCATCTTACCACAATCGGTCAGAATCAACACCCCCACCCTTTGAACGC
CCAAAAACCTTAAGAGGTGAAAGTTGCAGCGCCCAAACTCGCCCTAAATC
ATTAAGACTTGAAAACACTCAAATCCCCGACTTACCGAAAAATGTCTTTA
AACCGATTCGGAATAGTAGAATTTCCGTAACGGAATTTCCAACGGATGGA
TCAGAAATTAAAACGAAAATCTCAACTGAAGCTTCAtcaacaaacattga
aaatgTAAAAAGGGCTTTATTACTAGAAGATAAACTATTACCTTCATCGA
AAAGTACAGATGTTGATAGTGTGAGAAGGACTTTATTAAAAGAAGATCAC
ACTTGTTTTTCATTGACAAGTCGTGACAATGTAAAACGGACATTAATACC
AGGCAGTGAATCTGAAGGAAGCGAGGTGCAAGATGAATTGACCGGTTTAC
ACGATGACCTTCTTGAAGAATTGAGTGATGCAAAAGATGTCATGCAACAG
CTACAAACCGTCTTGATGAACGGACGAACATCGGAAGAAATGTTGGGATT
AGAATCTCCGCGTGATGAAAGTTTCCAAGAACAATTGGTTGTGAAAAATA
TTATGTTAGAACAGATTGAGAATGAATGTGCTGATTTAAGgCATCAATTG
AACGAATATAAAGAAATCAATATGCGACTGACGAATGAAAAGCATGGCGT
TGAACTCCGTTTCTCACAACAAGAACAACTCATCTTATCGCTGAAATCGA
AACTTTTAGAACACGAACAACCTAACGTAAAGAAACAAAGTGAACAACAA
TTACAAGCATTGCTAAGCGAGAAAAATAACGAAGTTCAATTGCTGTATGA
TGAGTTGAGTAAGCGAGACACAATCattgaaaaacataaaaacgaaCTGG
ACTCGATGAGTAATGATATTGTCAACAAAAAGCGCTCAGAGgcGAGCTTG
TATGCCAAACTCGAATCTAGCGAGTCTATGGTCAGCTCTTTACAATTGCA
GCTTCATGAAGCCACGGAAAACCTTCATCTCCAAGGCAACAATACCCAAC
AGCAACGTAGCAACAATTTTCGTGTCCCTCAACATGAAACTGACACAAAT
ACCACGAAATTACAAGATGCTAAAATACATCGAATTAAACAAAAGATCAC
AAGAGAGCATCACAATCTATCGACCACGTTGAAGAAtattaaagggaatt
tcccaagtAACGATCCAGTTCAACATGCATTCCAAAGTATCGAACACAGC
TTATCATCTTTGATGGATTCTGTCTCCATGTTAGATGTCACCAAAACTCA
ACAAAAAACACAACAAGGACAATATCCCTCAAATAAACCTCAAACGATAA
ATTCAAGCTCTCATAAAAAACCACACAAGACTTCTGACCAGTATCAAAGG
TTATCCTTACCTAAGCATCATTCATCACGATCGACAAGAACTAAAAGTAG
CATTTCATCTGATTCAGGTTATGACCACACAAACACAAACAACACACTGG
ATGCATCTGAGCAAGtcaaaattgtttattttctcGGCAAATCTGTTACA
CCCATACTTAAATCAAGTGACATTGGACTTGGTTACTTAACGTTACATGA
TTTCAAAGAGTTGGTTAACAGACCAGGAAAATATCGATATTTCTTCAAAT
CGAAAGATAAAGATTTTGGATTTGTCAGAGAAGAGTTGCTATATGATGAA
GACTTGGTCCCTGGCTATGAAAACAAAATTGTCTCTTGGATTGAGAAGTT
ATCAGTAGAGGAGGTTTGAGTCTTTCTCCGAAGCTATAATTACAATTATT
AATTAtaattatttatattttcttacCAAGAGTGTTTGTTTTAATttata
ttttggtcaatttaaatttttaacgGATTTTACAATTAATGActgataac
tttatttatttttcttatttttgtaaTGTATATAGAATAATATTATTAAC
AATTAATGCAGACTGGTGGCCTTGTTTGCTCGGAGCTTGTTCGAAGGGTT
TAGAGGGGGTAGATAACGACTTTCTGAAATGAATGTATTTTGGGGCATTT
TGGTCCCGATGATATCatcaaaacctaaaaatttGCGATATCTGCAAGAA
TTGACCTGATTTGCTCGGTAAAACGAAAGAATCTCCTAGAACAATGCGAA
ATTGATGTCAGTTAAGTGAAAATTACCCTTCGATGACATCATTATGGATC
agtatgacgtcataaaacatatatatagtgaagatatgtaatatctgtca
ttttagaaaaagaaaagtattgatatataaataactcaaactgataaaaa
cgaaaaaagttaagggtatttttgttaattgtgtgcatttacgatttttt
tggtatttattattttttaatcattccgaaacagagggtaatttagcaaa
aagttaaagggaatttaaatagtggtatgtgaaagaaaaacctaatccaa
atgaagatagaagaaaagtaatagtggagaaacaatgaattgcaaaaaac
ttttttgataaatacacTTCCTTAAgttcaaaatacatacaaaatgggga
caaatacaaaagcaaac
Run BLAST on NCBI

transcript from alignment at scaffold_234:186861..201484+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053799 ID=TCONS_00053799|Name=TCONS_00053799|organism=Clytia hemisphaerica|type=transcript|length=14624bp|location=Sequence derived from alignment at scaffold_234:186861..201484+ (Clytia hemisphaerica)
CTTTtgtcatcatattttatgaGAGTGTAGTATTGGTTTCTTGGTGATGC
TTTAATCTGTTTGAATGATCTGGTTTGGACAAGACGATGTACAGTTTTCA
ACAAGTAATATACATACATATTTGTGCATACGGTATAAATCTAAAACGAA
CCTAGCGAACGCAAACTTTATTTACCAAAAAGTGCCGTTTTAAAGgtctt
aaaaagaaatttgctACGAAATCATCGTTCAAAGACGCCTTTTGGGTGCT
TTTTTGCTATGATAATCAGCTGCTTGGGGGGGGCGAAATTCGAATCAAAC
AGAATATTTTACTAGGCAAACTCAAATCCAGCCCCTTAGTTTgctttttt
aatgattctgatagcgctcccGAATAAAGGTATACCCTTATCAGTAGCCA
gtgccttcccacaaaccaaatttttttttgttttattaaatcgcgataaa
aaagcggttttcgtctaacaggctaccttatcagtaaaatcaaaaagtgg
tgcaaaTAGATCTGCGTACGAGATTGTTTACTAGGCTCTCTCCCCTTGAT
GGGAACTAAGTGTTagctcgaattatagaaaattcGAATGATAGAGTCAA
CtttaaatatttatttcttTCTGGCTGTTCCAACCCTCATTTTAAGTTAC
TAGCAATCAATACTTTTGCAATAAAGACGGATAAATACTAACTGAGCGGT
TTATAATTAGGTGCTTAAATCCTGCTGTAGTATATTTTCCTCTATTGATC
CCCTCTAAAAGCTTGAAATCATTTTATCCTAATGGTGATACGCTTataaa
tttattcttattttttaattcaagtACTTTCTAAAATGTAAACGATCTAG
TGGAGAAGGCATTTCACTGGTTCGATTTTTCTTTAATGTCATTACAGTGG
AGTATCCATAagtcgaacacgcacggggaacacaaaatTGTTTGAGATTA
AGATATTTCAAGATATGGAGCatgtttataaggcattgttaagtgAAGGG
ACCATAAACCTAAGGAGTTAGGGAAAACTGTTTAGGAATTTCTTTTATGT
CATATGATTTATGTAAGCCAAATtgtccatttttatgaaaactGGTAAAG
AGGTTGAATATCATATTTTCCATGAATATGAACTGATTATATGCGTTTTA
CAGTAATATCGACTTTCTGTCTTCTCTTTCCTCATTTTTGACGAAAGTCG
GCAGAAAATCgactgtctaaagtcaatgcgataccttcttttgacgtcaa
tgcaatgaattgttgtatctttttcaagcaaagatttgaaACTGCCGACT
TTCCGTGGATCTTCTCCCGTCTCACACATTGAAAGGAGTTTCCTTTACAA
CGCCATACTCTCTAGGCTAGACTTTCCATCGCTTAACTTCATGAcagata
aaattttttgattggcttaaattTATACACGGTTCTCTATATCTCTTTTT
TGTCTCTTTCATTCAGATTATGAACCAATCGGACTCGTACATCACTTGGG
TGAACAGTCAactgggtaaacgagacaaaagtCGTCACGTGAAAGATCTT
TCCAAAGATATGAGGGATGGTGTGGTCTTCTTGCAGCTGGTTGAAGTCAT
TAGTAAGTTTAAAAGTTTATCCAGTCAGCACACAACCCTATTTCAATGTT
CCTGCAAGGTGTTTAGAACGCTTAACTTTAAAGGGGGGGggagtgacgaa
attttccccgcCGAAAACCCTTTCTGCTCAACTTCAAGGGAGCTGtgaca
aagattttccaaaaagttactAAAATTTCCTGATTTAAATTTTACCGCCG
ACAAAAATTTTAACCGACTAAGTTTTCCTGTCAAAGGTATTATCTTGACG
TttatattttggaatttttgtgcCAGCCCAGTGCTAAAACTGTCTAATGC
CATAAAAGCTAAAATAAACTTACTTCACAGGactgtaactttttatctaa
GAAAAATACGGAAAATCTAAGCACATattaaaaaatttgttcaaaagttC
TATAAAATATCATgtcaaaatcttctttttttaccctacttcatttttca
atttttcaaaagtttttaactttttacatTAGACACGACACGCTATAGTA
AATTTGAAACGTGCTTagggaaaaaaagttaaactcgtgtgaaaatatct
ttccaacggtgtatatcGTTTTAATATATCGGAGCTggaaaagtgttaaa
aaatgtttgtctttTGAGACAGAAATAAGGTATATAAAAGGCAAAGTTTC
AGTCTGGGGATGGTGATTTTACATAACCACTCACTAATGGTGTCATTGTA
TTTCACTTTCGTACGTAGGCGATTCAGAGCAACAAATATTGGATCATTCA
CAACTTTCGATTAACGATATGCGATACAACTTGAACAACGTTTTGCAATT
CTTATCCAACAACAATGTCAGGGTTCACCACATCTTACCAAAAGGTCAGT
ATTCCATCCAAAGCAAAATTTGTGATAGACAGTTGTACGAGCTTTGCACT
ATTTTTAAGGTCAATAGTTGGtcttaactttttcaaagaTCTTATAAGAA
AGATGAGAGTCAATAATACCGGGGAATCACCCATGCCTTCTTAAATACTC
AAAAACTTTCCTTAGGTAGTATATAAGATTGCTTTAacagtattcatgat
atgcatcactggagagtcttccgagaaagttttcaacccaatacgtcact
taaataATAGAACAAGTGCATACCATGAATAGGTTACGTTACGTTACGTT
GCGTTATGAACGCTAAAATATAGACGTGTTGTGTTTTACTGGTATGACAT
CGGCACGTTAACATTGTTCTTATTTCCCATACAAAGTCTTACATGTCATT
TTCAGAAATCATCGAGGGAAATCTAAAGACCACCATGAGATTGATTCTCG
CCCTTGCCGCCCATTTCAAACCAGATTCCTTTAACTATAACGCCCTAAAC
AATAACACGAGTACGCCCTTAAAGACCAACACAAGTACGCCCGTCAGTAA
AAGCACGAAGAAGAAATCTATGCAAAGAGCACCATCACTCGTTTCGCTCG
CTTCAGAAGCGGCCGCTTCACTAGCTGAAGCGAGCAAAAATGCGTCGAAA
GGCGGGTCGACTTCAAGAAGTAGCAGAATCAGGTATGTGATTAAATAAAA
CGAcctaaaagaattaaaatttgcCTCTTAACCTTTCCAACacgcaacat
tttttgaaaaatgtgtaaatttccaacttttttttttaaatctaaaattt
caaattggcataaaagTTCAGTTGTAACTTTAGAGTTAGACAATGATTTC
GGTACCGTAAAAACCTTTCTAAAGTCTAGTCTGGGACTCGGTATTTTGGC
GAATTGAAAATGTCTATAAACGTCTGCCGGGTCTGAAAGTGTTAACACTT
TATTTGACGCCGGATGCAGAAATTTCTTAGTGCTCCTTTTTTTCCCTTCT
ACCAACCGTGAAGATTTTATGGCGCATTTGTTtcttactttttcaaattt
caatcaaatacCACGTGTGGGCTAACATCAATGAAAGCTCACGCCATAAA
CTGAtataatgtaaaaattttatgagttggttcaaaaatatttcacagcT
GGATATAGACTAGAATATTTTTCCTGCTACAGGCAGAAAGTgcatacttt
tttttataagaaagtattttttccTTCTGTCACTAAaagcaatttttgga
aaaacttttcAGGGCTTTCCATATTTAGAGCTGAAATTATAAAATACTTT
TGGAAAACTTTCAAGGGCTTTTTTTCAATTAATCCATatatttttagcta
aaaatatgaaatatttgtGACCATCGATAGTAGTTATCCACAGATATACT
TTTCCAGATATTTGAGGTCTTTCAATTTGACGTAATATACTTAAATTTTc
gtataagaacatttttacttTCAAACCAAAAACATATTTTACAAACAATA
AATTTTCCTTGTAGTTATATCAATATCATATAGCTATAATatcagttttc
ttaaaaattcaaacATCACTTATATATTCAAACACATCATTCAACGACAG
GTTTTTCTATCATTCAAAAACCATCTCTCTTCGTCTCCGCATACGGATTA
ACTGTTAAAATTCCTAAAACTTTCTCACATatatataaaaaactttttta
agactaaatttttattcaaactgTTTTAAAAGCTTCATTGGTGGGATAAG
ACAGGATAAGAGGGTGCTATATATTGATGGGACAAATATATGtttcatat
tttgaaatattttgatgataatTGTTGATTCATTGATGTATTTTTGTTTG
GAAACCTCTTTTCGTTTCGAACATCAAATTCAAAGGTACTACACTAATTC
ATTGTTTTccaaatgacaaaaaaacaatgCTGAATTTTAAGACCCTCTTC
AGCCAATAAAATAAGCATTAGAACAATGTAAACTACGAAGTAAAAACACC
CCAGTCACAGCCGAAATTTACAAGAAAGTTATTTCAGCGCtatatttttc
tctattttcccTTTAGGAAGCAGCAATTATTCGACAGCGTTCCACCGAAA
ACAAAACATGTATCTCAACGCCACCAGCAATCGTCCAATCAGTATCAAGC
TTCCAAAAGCTTCACAATGCCTTCATCATCTTACCACAATCGGTCAGAAT
CAACACCCCCACCCTTTGAACGCCCAAAAACCTTAAGAGGTGAAAGTTGC
AGCGCCCAAACTCGCCCTAAATCATTAAGACTTGAAAACACTCAAATCCC
CGACTTACCGAAAAATGTCTTTAAACCGATTCGGAATAGTAGAATTTCCG
TAACGGAATTTCCAACGGATGGATCAGAAATTAAAACGAAAATCTCAACT
GAAGCTTCAtcaacaaacattgaaaatgTAAAAAGGGCTTTATTACTAGA
AGATAAACTATTACCTTCATCGAAAAGTACAGATGTTGATAGTGTGAGAA
GGACTTTATTAAAAGAAGATCACACTTGTTTTTCATTGACAAGTCGTGAC
AATGTAAAACGGACATTAATACCAGGCAGTGAATCTGAAGGAAGCGAGGT
GCAAGATGAATTGACCGGTTTACACGATGACCTTCTTGAAGAATTGAGTG
ATGCAAAAGATGTCATGCAACAGCTACAAACCGTCGTAAGGATCTTCATA
GAAAATgttttcccagctggcacacaacgttgtgtgtcagctgggttgtA
AACTCTTTCTAAGCCAAACagcacacaatgttgtttcaacgtatAACTAG
AATTCAACATGAATGTTATGGCCGTGAGATTGACGTTACTCAGACTTTTA
GTGTCATGTGATAACTCATTTTTCCACCTAATTAGCGATTAGTGATTTGA
AGCATTTGGTTTAGAATGGGTCAGGCCGTTTTGAAAGCCTTTAGCAAAAA
TCATGTCTGAAAATCAGCGATTCAATTCTGGTGATTCTGTTTAGAATAAA
GAATCATATTTTAGATTATCGTGGACCTGGCACAAAACTTACAGTTCCAA
AATATTGAGCTATGTTTATAAACCACTTTTTAAACCAATTAAAAGATAAT
GTCTACAGAATAATACAATGCAGACAGGTCCTTTTATATTACTCCATATC
ATATTTTATGCAGTTGATGAACGGACGAACATCGGAAGAAATGTTGGGAT
TAGAATCTCCGCGTGATGAAAGTTTCCAAGAACAATTGGTAAGTTCATTC
GTGATGTGCGGTGGCaagttgaaatttgaaaaagtttcttctGGTGGAAC
ATTAATAAATCCTTTTAATTCAATCAGAAAGATGCCAATTTTGGTCAATT
ACTTTTAAAACTTTCGGGTAAAACTTTCTATCGCGGGAAAACGCCttcgt
taattttttgaaaatctttgcaaGAGCTTCTATCGTGGTTCTAATTAAAT
CGCTACTTCAACGGGCTAGTATGTACACTATTAGTAATTTCTCCGTACAA
TAGCCTATTCGATTCATACACTGATAATTATTGTCATTCTTTTATATATC
TTTTCAGGTTGTGAAAAATATTATGTTAGAACAGATTGAGAATGAATGTG
CTGATTTAAGggtaagaaaaatgttcttgTTTTCCCTCTGAGGATACAGT
GCTAAACCTGTAAATCAAAATTAACAAATAACCACGTGACCAACTTTTAT
TCAGGTACTTTCCATCAAATCCACTGACCCATTCATTCATtcctattctg
gtctgtaaaataccaactagACAGGGTGGCTGAACCAAAATTTTACAGAT
CATTAGGTTCTATTGTATTTTGCACTTGTAATAGAAAGTCACTTTcaaca
ttttggaaaattgttaacTTTGTGACTTCATTTTCAGCATCAATTGAACG
AATATAAAGAAATCAATATGCGACTGACGAATGAAAAGGTACCCTTGTTT
TCTCATAACATTTCCAGTTTAGGTTATCAATTTCTTGAACTTAAAGGtct
tttgttaaaatttgtAAAGAAACTATCTGGAGGGGGTACCTATAGGTAAA
GTCCCAATAAGGGGATGTATTGGTTTGTCAGGGTACCAATTTTTTACCTT
CACGGAGTCCCAACTTGCAATATCAGGAAAATATCATCATTTCATATATT
CGTATAtttcatagttttgaaataatttcCTATCCATTCCCTATCCATCT
GTGCATGAAGCTTTTGAAGTTCTTCTCGCTTGTTACATTCACTAACCTTG
ACCCCTACTCTCTTTCTGTTCTCCATAGCATGGCGTTGAACTCCGTTTCT
CACAACAAGAACAACTCATCTTATCGCTGAAATCGAAACTTTTAGAACAC
GAACAACCTAACGTAAAGAAACAAAGTGAACAACAATTACAAGCATTGCT
AAGCGAGAAAAATAACGAAGTTCAATTGCTGTATGATGAGTTGAGTAAGC
GAGACACAATCattgaaaaacataaaaacgaaCTGGACTCGATGAGTAAT
GATATTGTCAACAAAAAGCGCTCAGAGGTAGGAATTCTTGACAGTTCGGC
ATGTTGCATAGTTCCGCAGCTCTGTGAAGGTGCTCTGTGATTTGAAATTA
TGAACACCGACCAATTTTCTGTTCGTCACCCTTCGACCCTGTTCTTAGTA
CAAAAGTAAGCTTTGTTAAATTTTGTAACCAAAAAGCTGCGGAATTCGAC
AACGTTGAGGAATTTTACAACGCTTAAATTGCAGAATTTCGCAGTGCTGC
GAttcaatacacaggttgcaaaattaaagtctgaatacaaatcacgcttt
tacttgaaattttgatgtgcttgttacatgatatttatttctgattggtt
cgaatttattgacactaataaagctATCAGCTGTTAGTTGtaaagtaaca
tgggaataaaatcacgtgaactttttcgagtaatcacatgttttgacttt
AGTGATAtcattttgcaacccgtgtattcaaTTTCCCGAACTGTTGAGGA
GTGAAAACACGAGAAATGTTGGTTCAATGCAAAACACTCCATTTGTAATA
ACAAAAGGAAAACCCGTTTCGTTTTAAGTGAGCGGTAGAACTTAAAACTA
AAATAAGATAAGAGACAAATTTGAGAGAAATCTCATCCAACGTTAAAGAA
TTATCGCCTCATAACATGGGTCCCAGCTAGTGATTTGCGTGATGACGCGA
CAATTTTCTGTCCGTTTTCTGTCCAAGTTTATCTGGTATCCTAATAGCGG
ATTGGTGGCCGCcaacgctaaagctctaaaggagtaGGCCAACTTGCCAT
CGGAGTAGAATGATAGATCATACTCGAGCTTTGATGTGCCAAATCCAAAG
TCTGGCTCAACTATTCTAGCGCTTAAGCCTGATAATTTTCAAGCCATCCG
CTACAAAATCTGTGACGGCTCGCCAGACGGCGAAATTCCATAATCTAAaa
cttccagatgttgaaaattctcccgtccttcagagctttagcgtgttggA
AGAAATTTCTGCATCAAGTTTCAGTTACGTTCAAGATTGAATCAGCGAGA
ATTAACTGTtcacatttatttttttttttcacaggcGAGCTTGTATGCCA
AACTCGAATCTAGCGAGTCTATGGTCAGCTCTTTACAATTGCAGCTTCAT
GAAGCCACGGAAAACCTTCATCTCCAAGGCAACAATACCCAACAGCAACG
TAGCAACAATTTTCGTGTCCCTCAACATGAAACTGACACAAATACCACGA
AATTACAAGATGCTAAAATACATCGAATTAAACAAAAGGTCAGATCTGtt
tcaaaattgtttcataTGTACCAACTCCaatacttgaaattttgaagtta
aTCATCGGACGATTGGCGAGAGATACATTCCAAtacacagatttctgtaa
agtcCGAAGATCTAGATAAATGGAGTGCTTTGGCTGAGAGTgcgccgtgg
ttaggtaggaaattctacctaggtcacgtgatattacaatagaattcctg
cgcttgaccaatcagaaggatggtgggttttcgaaaacaatagcaacaac
aTTTTTGCGATGCtcacttttttgcttggaaaagcttaaagcACGTCATC
TAGCCTACAGAAGTCTGTGGATACAGGAGCAATTATTTTCGACTGCGTGG
AGTGTCAAGATCTGTACGGAGATTATAGATGACGAAAGTTTAGACTTTTT
CTTCGTGTGTTAAGAGTTCGTGTTCAAGTTCGTGGGGAAAAttgtacagt
agagtctctttaactcgaacctctataactcgattgTCCCCTTGACTCGA
ACAAGTTTATCGCCCCTTtaattaacaatgccttataaattTTACTCCAT
AACTCCTGGAATCGAAAAAATTTGTGTTCTCCGTGCAAGCTCGAGTTATA
AAGACTGAACTGTACTCTAATGTCATTGTGTGTCAAGTAGAGAATTTGTG
GCAAAGATTATATTTTGCATAGTTTTTAAGAACTCTTATTCAATATTATA
CAGATCACAAGAGAGCATCACAATCTATCGACCACGTTGAAGAAtattaa
agggaatttcccaagtAACGATCCAGTTCAACATGCATTCCAAAGTATCG
AACACGTGAGTCAATATCACCCATAATGCAACATCCTTTTGTTGTTAGAA
ATCCGTAGTGCTTTTTAACTGAGACCAAATCTGCAATACAGATCTATCTA
ACATATACAACTAATTCTTGaaatgcgtaagtcaagattacgtcattttt
cctatcagAAACACCCAAAAACACCGGAATTTGACTAAAAGTAGCAACAC
ATTGTTTGCTTATAGGTCAAATTCTGGTGTTTTCGGATGCCGGGGGGGGG
CAAATAGGTTACGAggatgcgccgctggtcagggtaccttttttaacctc
tttAAGGTAGGGtaggtcgcaaaaacaccaaaatagaaaaatcagtccct
cgtaggatGGCttgtttggaaaatttggggaaaaaagtagaaaatttgag
aaaattttggaatttcagtcccattcagggtcactttatTCGCAAATTTc
cgcaattttttgaaaaaatgagtcccacgtagggtctatttttcgaacct
cagcggagttCCCTTGttggtcggcaagggtagtaccacccccccccccc
cggggttttttaaaaaaaaaaaaaaaattttttttttattttgtgttttt
aaaaCTATGCATCTTGTTTTATCCTTATtagaaacccggggggggggggg
gggaccccccccccccccccggggttttttaaaaaaaaaaaaaaaatttt
ttttttattttgtgtttttaaaaCTATGCATCTTGTTTTATCCTTATtag
aaacccggggggggggggggggaccccccccccccccccggggtttttta
aaaaaaaaaaaaaaattttttttttattttgtgtttttaaaaCTATGCAT
CTTGTTTTATCCTTATtagaaacccggggggggggggggggacccccccc
ccccccccccgggtttctgatacgaaaaatgacgtaatcttgacttaagC
ACATCAAGAATATCATTGAATTTTTTATGATCAATGTTTgccatattgat
aaaaaatattttttatctttttactaTTCTATAGCACTGATAATGGAAAG
ACCGAAaagctttttctaattttaaattgttgttgttttttattaataTC
ATTAAAGTCTTTGAAAACCTTTAGAAATTATAGGAAAAGCTGTTTGATAA
TCTACTCGATTTTTCTGTTGAAAGCTGTTCTTGATGGTTTATAATTTATc
ccaacccagctggcacacacaacgttgtttcaacgtttatctaatgtgca
taacgtccatatgacgttagatgaacgttgaaacaacgctgagtgccagc
tgggaatagatattaatttcattaaattacATACAAAGTTCTTCTTAATT
TAGAGCTTATCATCTTTGATGGATTCTGTCTCCATGTTAGATGTCACCAA
AACTCAACAAAAAACACAACAAGGACAATATCCCTCAAATAAACCTCAAA
CGATAAATTCAAGCTCTCATAAAAAACCACACAAGGTAAAaattcagatg
agatggagtttttataagatactttaatgggtttaataattggtcatttg
aagtaataaaaatgacgcgttctttagaaaaagtaacaaaattgttttat
tactggtttaACGactaaccaaatcaaataagagatTGTAAAAACTTCAG
CTTGTCCCTAAAAATCATTATTCGATTTCTTTCAcgctttttatcttttt
aatcGTTGATGCTCGAGATAATAAAATGGGGCTCGTTCCCAGCAAAAAGA
TtaaccatttttcttttcgttcaACGGTTTAACGGCTTTAGTTTAGGGTC
AGATTATTGGAGGGATTGACCTTGACGGCCAATGGGGATGTGCTGACTGG
AGTTTGAGAAATTGACCCATATGATTATTGCTAAACTTTGGACCCTTTCA
gaacaaaaaatcgaaaattgttCCCTTTTTCCCTGataagtggcaaaaat
gacaaACAAACAGTAGACAAAAAACTCGAAAATGGAacaatttccaccct
gaaaatcgtccaaaataaccaaaattcgacCCTATCAGATAAGATACGCA
TCTTGAAAATAAGTAAATTTggaaccctgtcagatatcgTTAGAACCTAA
AAAAGGGGCCCTGACCAGCGACAcatccccgtacccaattttccTAAGTG
ACCCTAagtgatggttttggagtgcaattttttattACCAATGGGGGTAA
GTAACATCACAAGGCAATTAAATCTTCGGGTTTTTTCCAACGAGGACGtt
attttggcctatttttcagTGGGACTGGGGCTCAAACGGGTGGTGGAGGG
TGTATCCATTAAGAAAATGAATCTAGTCTTGCTAGTCCTAATATTTATCA
TATCTCTTTTATAGACTTCTGACCAGTATCAAAGGTTATCCTTACCTAAG
CATCATTCATCACGATCGACAAGAACTAAAAGTAGCATTTCATCTGATTC
AGGTAATTTTATTGAACAAAACGTTCACAAGAGATCTGACATTTTTTACA
CTAGTTCATTTGAGATGCAAATATAATTCAAACGGGTATACTCGTGAACC
TTAAAGTCGTTTATTACCCACTTTATTTCAACAATCgtaaaaaagttaaa
gtaaTTATTCTCAGGTGCCTGATAAACAGGGGGTTGGGAATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
GGGGGGGAGTGGAAGTAGTACCTCTAAATACGATATCACtcttaatttaa
aaacaaaatctttaatgcATAAATTTCTGACTCTTTTGTATAAGGGAGTG
TGTGGTGCACGTTTGATTCACTTTTACAGGGTAAAAATTCAGtcgtttta
gaaaaaaatatatttttttaaaatgacCCAACTTTTCAACCTTTCCTACA
TCAGGTTATGACCACACAAACACAAACAACACACTGGATGCATCTGAGCA
AGtcaaaattgtttattttctcGGCAAATCTGTTACACCCATACTTAAAT
CAAGTGACATTGGGTAAGTTGAGCTTTCAGTATGAACTGATCACTTGGTC
GGTAAAGTATAGTTGTGcactaaaggccggtctccactttcgcgtgaaat
gagcgaaaactttttagcGTTTTTGTAATGTCactggtcggttgaaaaat
gaagcaattccattggtcaaaattgacgtaacgattgaaaaaagttgaac
tttcttcaactttttttatgcACTGTAAGAGTGGAAattcaagcaatttt
ttttgctctcaaagagttgaaatttgacaaaaatgcgtaagggtgtgatt
ctaaaagccaatttttcgCCGCCAATTCCCTCAGTTgataaacccactgc
ccccggACGGTTGTCTATCACACTAAAGGCTATGGTTGGTCATTATAGTG
TTtttagaaatatgaaaaattttgaatttatcttTTTGAAAGCTTGAAAT
TTTGGCAAGAGATATCCTTGGGATACTTTGGCGgagattaaatttggcga
attttgcgaattttgccaaaattcgccaaattaaatcctcgccaaaattt
ccaaattcggcaattcgccaaattaaatccccgccaaaaattgatttttg
gccgaacgccAAATTAagtccacgccaaaatttatccacttacaCAAAAT
ATCATAAAGTTTCACCCCAAATATTTCTTTCCTACCGTTAAATGATATCT
TCTCTTTCATTACAGACTTGGTTACTTAACGTTACATGATTTCAAAGAGT
TGGTTAACAGACCAGGAAAATATCGATATTTCTTCAAATCGAAAGATAAA
GATTTTGGATTTGTCAGAGAAGAGGTAAATTATTtcacgttttgtataag
attccacATCCTACACTAAGATTTCTCTgtcattttctttcgaaaaagtt
AGTTGAAAAATGAGATCTGGAAAGTTGGGCAGTTTCGTGAGATTTTCCGT
AACTTTAGAAAAACACTTTTCCACTCAAATTTTGGTTATTCTGGGAAAAA
TAACGGACAATCTGGGAAAagtaaaatcataaaaaaagagaatCTTAGTG
CGGGGAGTGAAGTCTTGTCTGCTTGATTGCTGTGACTTTAATAGTCGGGA
CCACTACATGGAAAAGGCAACTATtaccttaacgggaaatatttcccgaa
cagTAAGGTGGCGAAAACTTCCCAACTGTTTAAGCCTAAAACTATAAATT
GCCGCTAACTACTCTAACTAACTCTTCTCCTTTACTCTCTAGTTGCTATA
TGATGAAGACTTGGTCCCTGGCTATGAAAACAAAATTGTCTCTTGGATTG
AGAAGTTATCAGTAGAGGAGGTTTGAGTCTTTCTCCGAAGCTATAATTAC
AATTATTAATTAtaattatttatattttcttacCAAGAGTGTTTGTTTTA
ATttatattttggtcaatttaaatttttaacgGATTTTACAATTAATGAc
tgataactttatttatttttcttatttttgtaaTGTATATAGAATAATAT
TATTAACAATTAATGCAGACTGGTGGCCTTGTTTGCTCGGAGCTTGTTCG
AAGGGTTTAGAGGGGGTAGATAACGACTTTCTGAAATGAATGTATTTTGG
GGCATTTTGGTCCCGATGATATCatcaaaacctaaaaatttGCGATATCT
GCAAGAATTGACCTGATTTGCTCGGTAAAACGAAAGAATCTCCTAGAACA
ATGCGAAATTGATGTCAGTTAAGTGAAAATTACCCTTCGATGACATCATT
ATGGATCagtatgacgtcataaaacatatatatagtgaagatatgtaata
tctgtcattttagaaaaagaaaagtattgatatataaataactcaaactg
ataaaaacgaaaaaagttaagggtatttttgttaattgtgtgcatttacg
atttttttggtatttattattttttaatcattccgaaacagagggtaatt
tagcaaaaagttaaagggaatttaaatagtggtatgtgaaagaaaaacct
aatccaaatgaagatagaagaaaagtaatagtggagaaacaatgaattgc
aaaaaacttttttgataaatacacTTCCTTAAgttcaaaatacatacaaa
atggggacaaatacaaaagcaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033951XLOC_033951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053799-exon-scaffold_234-1491911889:186861..186964TCONS_00053799-exon-scaffold_234-1491911889:186861..186964Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:186861..186964TCONS_00053799-exon-scaffold_234-1510915933:186861..186964Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:186861..186964TCONS_00053799-exon-scaffold_234-1575043694:186861..186964Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:188327..188462TCONS_00053799-exon-scaffold_234-1491911889:188327..188462Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:188327..188462TCONS_00053799-exon-scaffold_234-1510915933:188327..188462Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:188327..188462TCONS_00053799-exon-scaffold_234-1575043694:188327..188462Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:189179..189304TCONS_00053799-exon-scaffold_234-1491911889:189179..189304Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:189179..189304TCONS_00053799-exon-scaffold_234-1510915933:189179..189304Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:189179..189304TCONS_00053799-exon-scaffold_234-1575043694:189179..189304Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:189716..189992TCONS_00053799-exon-scaffold_234-1491911889:189716..189992Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:189716..189992TCONS_00053799-exon-scaffold_234-1510915933:189716..189992Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:189716..189992TCONS_00053799-exon-scaffold_234-1575043694:189716..189992Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:191377..191995TCONS_00053799-exon-scaffold_234-1491911889:191377..191995Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:191377..191995TCONS_00053799-exon-scaffold_234-1510915933:191377..191995Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:191377..191995TCONS_00053799-exon-scaffold_234-1575043694:191377..191995Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:192474..192548TCONS_00053799-exon-scaffold_234-1491911889:192474..192548Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:192474..192548TCONS_00053799-exon-scaffold_234-1510915933:192474..192548Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:192474..192548TCONS_00053799-exon-scaffold_234-1575043694:192474..192548Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:192868..192921TCONS_00053799-exon-scaffold_234-1491911889:192868..192921Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:192868..192921TCONS_00053799-exon-scaffold_234-1510915933:192868..192921Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:192868..192921TCONS_00053799-exon-scaffold_234-1575043694:192868..192921Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:193198..193248TCONS_00053799-exon-scaffold_234-1491911889:193198..193248Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:193198..193248TCONS_00053799-exon-scaffold_234-1510915933:193198..193248Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:193198..193248TCONS_00053799-exon-scaffold_234-1575043694:193198..193248Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:193589..193837TCONS_00053799-exon-scaffold_234-1491911889:193589..193837Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:193589..193837TCONS_00053799-exon-scaffold_234-1510915933:193589..193837Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:193589..193837TCONS_00053799-exon-scaffold_234-1575043694:193589..193837Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:194895..195098TCONS_00053799-exon-scaffold_234-1491911889:194895..195098Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:194895..195098TCONS_00053799-exon-scaffold_234-1510915933:194895..195098Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:194895..195098TCONS_00053799-exon-scaffold_234-1575043694:194895..195098Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:195814..195915TCONS_00053799-exon-scaffold_234-1491911889:195814..195915Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:195814..195915TCONS_00053799-exon-scaffold_234-1510915933:195814..195915Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:195814..195915TCONS_00053799-exon-scaffold_234-1575043694:195814..195915Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:197264..197395TCONS_00053799-exon-scaffold_234-1491911889:197264..197395Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:197264..197395TCONS_00053799-exon-scaffold_234-1510915933:197264..197395Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:197264..197395TCONS_00053799-exon-scaffold_234-1575043694:197264..197395Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:198275..198362TCONS_00053799-exon-scaffold_234-1491911889:198275..198362Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:198275..198362TCONS_00053799-exon-scaffold_234-1510915933:198275..198362Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:198275..198362TCONS_00053799-exon-scaffold_234-1575043694:198275..198362Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:199265..199373TCONS_00053799-exon-scaffold_234-1491911889:199265..199373Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:199265..199373TCONS_00053799-exon-scaffold_234-1510915933:199265..199373Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:199265..199373TCONS_00053799-exon-scaffold_234-1575043694:199265..199373Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:200076..200184TCONS_00053799-exon-scaffold_234-1491911889:200076..200184Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:200076..200184TCONS_00053799-exon-scaffold_234-1510915933:200076..200184Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:200076..200184TCONS_00053799-exon-scaffold_234-1575043694:200076..200184Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1491911889:200603..201484TCONS_00053799-exon-scaffold_234-1491911889:200603..201484Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1510915933:200603..201484TCONS_00053799-exon-scaffold_234-1510915933:200603..201484Clytia hemisphaericaexon
TCONS_00053799-exon-scaffold_234-1575043694:200603..201484TCONS_00053799-exon-scaffold_234-1575043694:200603..201484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:186861..201484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.272538	0	0	0.108981	0	0	0	0	1.07506	1.37155	0	0.712666	0.562555	2.51024	0.33054	0.62986	0.190416	0	3.86686	3.0104	0.666699	0.477695	0.0023399	0	1.79673	5.41626	0	1.36929	0	0.542447
Blast
[Close]
BLAST of TCONS_00053799 vs. Swiss-Prot (Human)
Match: DIXC1 (Dixin OS=Homo sapiens GN=DIXDC1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.563e-23
Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = 3 
Query:  114 QSDSYITWVNSQLGKRDKSRHVKDLSKDMRDGVVFLQLVEVISDSEQQILDHSQLSINDMRYNLNNVLQFLSNNNVRVHHILPKEIIEGNLKTTMRLILALAAHFKPDSFNYNALNNNTSTPL 482
            Q  +Y+ WVN+QL KR   + V+DL +D+RDGV+   L+E+++  +   +  S  +  +M+ N+  VLQF+++  +R+H    K+I++GNLK+ MRL+LALAAHFKP S        ++  PL
Sbjct:   22 QLQAYVAWVNAQLKKRPAVKPVQDLRQDLRDGVILAYLIEIVAGEKLSGVQLSPGNQQEMKNNVEKVLQFVASKKIRMHQTSAKDIVDGNLKSIMRLVLALAAHFKPGSSRTVNQGRDSRAPL 144

HSP 2 Score: 85.8853 bits (211), Expect = 6.248e-17
Identity = 37/91 (40.66%), Postives = 63/91 (69.23%), Query Frame = 3 
Query: 2226 HTNTNNTLDASEQVKIVYFLGKSVTPILKSSDIGLGYLTLHDFKELVNRPGKYRYFFKSKDKDFGFVREELLYDEDLVPGYENKIVSWIEK 2498
            H+ ++ T+ +S   K++YF  +S+TP + +    L  +TL DFK  ++R G +RY FK+ D +FG V+EE+ +D+D +PG+E KIV+W+E+
Sbjct:  589 HSQSSPTV-SSTCTKVLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKALDPEFGTVKEEIFHDDDAIPGWEGKIVAWVEE 678
The following BLAST results are available for this feature:
BLAST of TCONS_00053799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIXC15.563e-2339.84Dixin OS=Homo sapiens GN=DIXDC1 PE=1 SV=2[more]
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