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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053834 ID=TCONS_00053834|Name=TCONS_00053834|organism=Clytia hemisphaerica|type=transcript|length=5907bpRun BLAST on NCBI protein sequence of TCONS_00053834-protein >TCONS_00053834-protein ID=TCONS_00053834-protein|Name=TCONS_00053834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1444bp MCRRQARMLKYKILYTHQKLKKAKTWQDGILKYRLENKKATIYTESGTALRun BLAST on NCBI transcript from alignment at scaffold_234:245682..268280- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053834 ID=TCONS_00053834|Name=TCONS_00053834|organism=Clytia hemisphaerica|type=transcript|length=22599bp|location=Sequence derived from alignment at scaffold_234:245682..268280- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_234:245682..268280- >TCONS_00053834 ID=TCONS_00053834|Name=TCONS_00053834|organism=Clytia hemisphaerica|type=CDS|length=56355bp|location=Sequence derived from alignment at scaffold_234:245682..268280- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053834 vs. Swiss-Prot (Human)
Match: ZGRF1 (Protein ZGRF1 OS=Homo sapiens GN=ZGRF1 PE=1 SV=3) HSP 1 Score: 526.554 bits (1355), Expect = 1.273e-153 Identity = 300/670 (44.78%), Postives = 422/670 (62.99%), Query Frame = 2
Query: 2423 LXDYRSLSTMLESHNIQFYGQTKIMRKAMNFFNRKRKEPQARF--------DRPKKSLYLVLPFKRSSSFYNKADLWVISKTIDFTPGDTFVAKSVFYGPNSSCELEICPLASYSMSQWHGNEACYAIQVYNAFTELSCIENLEENLRIHDVPVLKHVL------LPHEDSTRDQNFHEPK------DLSCLDENSIGELIENTIQNFSLNEDQAKALRHISGMFLK-QALNSAHSAQGHTSFFEELPPNQIKDITLIHGVFGAGKSXXXXXXXXXXXXXXELIEEQQRWESNTLKLMISSTTNVAVDRVLCALLEHGYDDFIRVGSLRKISKRILPNSLHA-EDHEDQELRELNTILKSPLTDTEKDYVKKAIEAHKMGANRTRLNRVRVVGVTCAACSFPLLKNLTFQVHLLDECSQMIEPLSMVPIARFHCQRLVLVGDPNQLSPTIQGSESAHPEGLEVTLFERLQKAGLDPIILRCQYRCHPAISLLCSKMFYKGMLTDGVSTDDRGPLLDWLGPVSIADISDGKEATASDGSLFNVKEVQYCVKLVNAILAEGLEPTQVGIITQYKAQVKRISNQLQESGVLSAM-----ELKGVQISTVDAFQGAEKDVIILSCVRTKFIGFINCPRRTNVALSRAKHHLIIVGCHRLLRTDRLWGGVLELAE 4351
L D +S+ L S I Y + +++ + F RK+ +F + PK LYL L K SS Y+K DLWV+SKT+DF DTF+A S F+GP+S E+EI PL Y S W N +A+ V NA TEL+ ++N+++ +P+ +++L + + F P L + +L IQ LN+DQA AL I+ M +++ Q HT P IT+IHGVFGAGKS+LL+VV++F +Q+FE E + KL+ISS+TNVAVDRVL LL G+++FIRVGS+RKI+K ILP SLHA ++E ++L+EL+ ++K LT TE+ YV+K+IE HK+G NRT L +VRVVGVTCAAC FP + +L F V +LDECSQ+ EP S++PIARF C++L+LVGDP QL PTIQGS++AH GLE TLF+RL G PI+LR QYRCHPAIS + + +FYKG L +GV+ +R PLL+WL + ++ G E D S NV E + +KL+ +++A G+ + +G+IT YK+Q+ ++ + +LSA+ ++K VQ+STVDAFQGAEK++IILSCVRT+ +GFI+ +R NVAL+R K HL+IVG LR ++LWG V++ E
Sbjct: 1407 LSDIKSIGLYLRSQKIPLYEECQLLVRKGFDFQRKQYGKLKKFTTVNPEFYNEPKTKLYLKLSRKERSSAYSKNDLWVVSKTLDFEL-DTFIACSAFFGPSSINEIEILPLKGYFPSNWPTNMVVHALLVCNASTELTTLKNIQDYFNPATLPLTQYLLTTSSPTIVSNKRVSKRKFIPPAFTNVSTKFELLSLGATLKLASELIQVHKLNKDQATALIQIAQMMASHESIEEVKELQTHT-----FP------ITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLGLLSLGFENFIRVGSVRKIAKPILPYSLHAGSENESEQLKELHALMKEDLTPTERVYVRKSIEQHKLGTNRTLLKQVRVVGVTCAACPFPCMNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPTLCFYNVK-GLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCH------LLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCE 2057 HSP 2 Score: 198.749 bits (504), Expect = 9.915e-51 Identity = 116/305 (38.03%), Postives = 166/305 (54.43%), Query Frame = 2
Query: 1574 GVDYAFPSKEQCKSNPTPQREIKLPLQYESVSQYKHTFKQAILEHLNIILWSTSDRYHKAANNVDL---TQLSGTDSVDEPTDPNKPSCKHG-PAILRSVKKEGKNKGRMFYTCSASSDKRCNLFQWFDEPNKQNSSKTQTSAVQSAKSRKVTITDYRSLSTMLESHNIQFYGHTKIMRKAMNFFNRKRKEPQARF--------DRPKKSLYLVLPFKRSSSFYNKADLWVISKTIDFTPGDTFVAKSVFYGPNSSCELEICPLASYSMSQWHENETYYAIQVYNASTELSCIENLXDYRSLSTM 2452
G + FPS ++ KS PQR+I +P ++S + YK TF ++EHLNI+L+ + KA + VD+ T L G + + N PSC H PA L VKKEG NKGR+FYTC RC F+W ++ T + Q + ++D +S+ L S I Y +++ + F RK+ +F + PK LYL L K SS Y+K DLWV+SKT+DF DTF+A S F+GP+S E+EI PL Y S W N +A+ V NASTEL+ ++N+ DY + +T+
Sbjct: 1263 GSELCFPSGQKIKSAYLPQRQIHIPAVFQSPAHYKQTFTSCLIEHLNILLFGLAQNLQKALSKVDISFYTSLKGEKLKN--AENNVPSCHHSQPAKLVMVKKEGPNKGRLFYTCDGPKADRCKFFKWLED-------VTPGYSTQEGARPGMVLSDIKSIGLYLRSQKIPLYEECQLLVRKGFDFQRKQYGKLKKFTTVNPEFYNEPKTKLYLKLSRKERSSAYSKNDLWVVSKTLDFEL-DTFIACSAFFGPSSINEIEILPLKGYFPSNWPTNMVVHALLVCNASTELTTLKNIQDYFNPATL 1557 The following BLAST results are available for this feature:
BLAST of TCONS_00053834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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