TCONS_00053857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053857
Unique NameTCONS_00053857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053857 ID=TCONS_00053857|Name=TCONS_00053857|organism=Clytia hemisphaerica|type=transcript|length=3023bp
CTTTCCCTCCCTTCCctctgaaaaatattaaacaatgAAGGCAACCATTT
ATAAATATATGATAATGATTAAAttctttattgaaaatagatataaaaaa
taaaaatgggggatgacaacaaaagaaaactCAACCTGGAAGATGAAATG
AACAGGTTTGAGCAGGAGATTTCTGGCAATCTCCCTCCTCCACCAAAAAT
GCCAAAGATGCCCAACATGATGGGTCCACCTGGCTTCATGGGCCGTCCTC
CCATGCCCCCTCCACCATTCATGAACCAAAACCGTAATGGTAGTGGAGGG
CTGCCACCCATGTCATTCCCTCCTGGTCCCCCTCCTCAGATGCCACCAAA
TATGTTTGGGGGACCACCAGGTGGCCTACCACCACCACCGGCAATGCGTG
GTCTCCCTGTTCCTCCACCAATGATGGTCCCTCCTCCCATGATGCCAATG
CCGATTCCTCCAATGGCGATGCCCTCATCTGCGCCAGGAAACAATTTTGG
TGGATCAGCGAACAATACATCAAGCAACGATAACATGTCATCATCTGTTT
CAAATATCAACAATCCTACCGCTGACAATGTGGTAGGTGGACCCGGTGGG
GGTGGTggtgaaaagaagaagaaagataagAAGAAGACGGTTGTTCGTGT
GGCAGGGAGCAGTGTTTGGGAAGATGATAGCCTTCTCGATTGGGATCCTA
ATGATTTCCGTATTTTTGTCGGCGATCTGGGCAACGAAGTAAGCGACGAC
CACCTTCTTCGGGCGTTCTCCAAGTACCCTTCCCTCAACAAATCACGCGT
CGTTCGTGATAAGAGATCGAAGAAGACCAAAGGTTATGGTTTCGTCAGCT
TCAAAGATCCTCAAGATTATTTGAAAGCAATGAGAGAAATGAACGGTAAA
TACGTTGGTAACAGACCAATCAAGTTACGCAAAAGTAATTGGAAAGATCG
AAACATCATGACagcaaagaagaaagaaaaggaaaagaagaagcTTGGCT
TACGGTGAAAGTTTGGGGATCTGCAAGTACACGTTGACCTGATTTGGCCG
agattattattttttcctcGATCGTAGCTTCGAGAAGAATACAATCGATT
TTCACATCGTATTGTTGTTGAGATGAAATAGATTGAGATGACAGTTCCAG
TTTTTTCCAATTCTAGTTTTTGGCTTATTATTTGAAGCTGGATTCACATA
GTCATTGAATATGCAATGGTTGCGTGCTATACAATATTATGTTGTAGGCG
AAGATATGGTGTTAGTCAAAGCTAATTGAACTTTATATCGCAGTATGTTT
TCCTAGTTGGCTAAatcaataaacaaaacaatcgaGTAATTATAAAGGGG
CGAACGTTGACTACTCCCTCTCTCTCTTTCTTTCTCTCTCTCTGGTAAAA
CTtcttgaaatcaaaattgattaagattttttttttccattaccTCAAAT
GTACTTCACTTAATATCGTTGAAacctttttgtatattttttctaaTAAT
TTGGCATTTGGAGTTCTAAATCCTACAAAACTTCGAATCTATGGAAAAAG
AGATATCTGGGGTGACATGGTCGTTTAGcatttttaacttgtttttttat
gtGGACGTTTTTAGGATAATTTGAAGAATATAAACTACGGTATTTTCATT
CTATCTTGCTTTTTCTATCCAAATTCCCAGATATCaatttttatgggttt
ttttCTGAGTTTTTATACAGTGCGGTCAGCCATTATTGGAAAAACTTTAA
TATactggtaaaaaattatttttacttgaGTATCACctaatggaaatttt
gaaataatggcAAATCTTTTCAATTATCTAGTCGAAGTCAAAGTATTGTG
AGTTTATTTCAATGACTTTTCTTATTCGAccgaaaaataatcaaatacag
GATTTATAACGACAAAATTGGTTTGTCAGCCAATAATAAGGGAGGGCTGG
CAACCTTTTCCTAAACGGTAACCACAACTAAAGAACTATATTTATCCTAA
AATCGGTAATTTCTTTGGATTTAATCATTTGTGTAAATGTAGgaagaatt
atcttttcaagctttcgaaaaaagcttttttgattACTTTCTAAAGATTG
ATAAATTGGAAAccaattttggaaaattaaaaGACCAGGTCTCGGTCCCT
CGTATATGAAATATTGAGATAACactaattttcattaaaaaaaatatatt
atttttttggtaaaatattaATTAGTTAGGCTCATATTTTATTCTATAAC
TCATTGccctatttttttttcaacaaaggGCGCTCTACAGGACCGTGGAG
TAAGCTTTATATTTTTCATCAGTAATATATTCAAGGTTTTGCTGAACAGA
CGATTCATTACAAAGTAATATGTGAgttacaaaaaaaatcacacaagTTT
TTTTGAGAATGGTGAATTTGTGCtatgttattttactttttaatcTTTAC
TTGGTGTTCTTGACTTGTGTAACCTCAAATGAAGCATTGACTGCTTTCTA
CCCTGAGGATGGCGCAAAGCGAATGACTTCAAATCGAGTGAAATTGATGC
TGGATGTACCTTTCAACTCAAATTTTCAAGGGATCGATACAAAAGATCAT
GTTTATATAAGAAACCATGGCTATATTTCTACTGAGGGATATCATTACAG
TAAGAAGGGAAATTATATCAAAGATCATCGAAGAGGGTTTTACCCTTTTT
GTGGTGATTTCGAACCAGGAAAGAAAGGTTATGTCAGCTTCTATCAATCT
CAAGCAAAGAACATTAAAGATTTGATTGATAGCGATCTTCAAAAAATGAA
CGTAGCAAACTTTGTTCCACTCAACACCCTTGTTGTTACCTATAAAATTG
GTCGAAAAAGGAGGAAAAACCTTAACCATTACCAAATCATCATAACCTAC
AACACATCCAAAGTGTACATCATTACAATTTACAAGGAATTATATGACGC
AGCAATTGTTGGTTTTAATATTACTAATTGCCAATCCACCATTATTACTC
CTCAAAGAGCAACGGATATGGCT
Run BLAST on NCBI

protein sequence of TCONS_00053857-protein

>TCONS_00053857-protein ID=TCONS_00053857-protein|Name=TCONS_00053857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MGDDNKRKLNLEDEMNRFEQEISGNLPPPPKMPKMPNMMGPPGFMGRPPM
PPPPFMNQNRNGSGGLPPMSFPPGPPPQMPPNMFGGPPGGLPPPPAMRGL
PVPPPMMVPPPMMPMPIPPMAMPSSAPGNNFGGSANNTSSNDNMSSSVSN
INNPTADNVVGGPGGGGGEKKKKDKKKTVVRVAGSSVWEDDSLLDWDPND
FRIFVGDLGNEVSDDHLLRAFSKYPSLNKSRVVRDKRSKKTKGYGFVSFK
DPQDYLKAMREMNGKYVGNRPIKLRKSNWKDRNIMTAKKKEKEKKKLGLR
Run BLAST on NCBI

transcript from alignment at scaffold_234:516054..525349-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053857 ID=TCONS_00053857|Name=TCONS_00053857|organism=Clytia hemisphaerica|type=transcript|length=9296bp|location=Sequence derived from alignment at scaffold_234:516054..525349- (Clytia hemisphaerica)
CTTTCCCTCCCTTCCCTCTGAAAAATATTAAACAATGAAGGCAACCATTT
ATAAATATATGATAATGATTAAATTCTTTATTGAAAATAGATATAAAAAA
TAAAAATGGGGGATGACAACAAAAGAAAACTCAACCTGGAAGATGAAATG
AACAGGTATTCATGCCATGTGTGTTATAATTTGTGTAGTCTTTCTGGATA
TCATGATCTTCTCACAACCCTTATTAAAAACTTTTATTCCCTTACAACAC
TTTGAAATTTATCGATTTTGATGGTTAAGATAATGAAGGTTTCGGTTTTT
GCAACGCAATGCTTTTCTGTTTCATCATTATGACGAACATGATAAATCCA
TTATTACACCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATT
GACACTTCCCCTCAAGGATTTTTGTTTTAATTTTCATAAATTGTGAATGT
ACAGTCTGGTGGCTGATATTTTATGGTAGACTATATTTTTCCACTTTTAG
CCACCAAAATGTACTTTTTTCAAAAAAAACTTACTTAGCCTATTTCTTGT
TGTATTTACTATGTATTGGTAAAGTTTCGCATTTATATTGAAAATATTTT
TAGAGTTATTGAGAAAAATGTGTTTTTGTTGATTTTTTGATACTTCACAC
AATTTTTGACTGGCATCTTATCTAGGTTTGAGCAGGAGATTTCTGGCAAT
CTCCCTCCTCCACCAAAAATGCCAAAGATGCCCAACATGATGGGTCCACC
TGGCTTCATGGGCCGTCCTCCCATGCCCCCTCCACCATTCATGAACCAAA
ACCGTAATGGTAGTGGAGGGCTGCCACCCATGTCATTCCCTCCTGGTCCC
CCTCCTCAGATGCCACCAAATATGTTTGGGGGACCACCAGGTGGCCTACC
ACCACCACCGGCAATGCGTGGTCTCCCTGTTCCTCCACCAATGATGGTCC
CTCCTCCCATGATGCCAATGCCGATTCCTCCAATGGCGATGCCCTCATCT
GCGCCAGGTAAATTTTAGTACCCTTTTTTTCAGCTACCCTTCCTTTCGGG
ACAATTAAAACTATAATATAGTAGACCCCCAATCTAGTAGACTTTACATT
ATAGTGAGCCTTTTCAGAAACTTATTCAATTGTCAAGGGTAGAGGGGAAA
ACAAAATATCTGAATGACTCCAAATGAGAGTAAACATAATTGGATAACAT
AAGAAAACCTCAACATCTTTCGTTAGATTGTATAGGTATCACATAGTTCA
TGATTCAGAATAAATATATTTATTAGAAAACCACAGTTCTGCTGCCTTTT
AAGGTGTGACGAAACATTCTGAATTTTGTTATAAAAATACTTGAAGGTTG
AAGAACCTGCTGCCAACAATATTCCTATCATTAATTTTATAGGAAACAAT
TTTGGTGGATCAGCGAACAATACATCAAGCAACGATAACATGTCATCATC
TGTTTCAAATATCAACAATCCTACCGCTGACAATGTGGTAGGTGGACCCG
GTGGGGGTGGTGGTGAAAAGAAGAAGAAAGATAAGAAGAAGACGGTTGTT
CGTGTGGCAGGGAGCAGTGTTTGGGAAGATGATAGCCTTCTCGATTGGGA
TCCTAGTAAGTCTTGAATTGTTTATAATTTTTTGAGACTACATTCTTTAA
ATTAGGGCGTGGTTTCTACCTTAGAATAATAAAATTGTAGTATTATAAAA
TATACTATCGACCCTTGCCATAGAAGCTGTTGGACCTGGTTTGACATACA
TCCAATACTTCAACTCATTCATTTTACGGTGTTTAATTTGATCAGACAAA
TTATATAGATCTATTAAAATCTCTGTGAATCCTCTGGAATACTACCAATT
TTTTTAACCTCTATTTTTTTACGACTTTAAGAGGAAGGGACCACTTCTCA
GCCTACAAGTTCATTGTTCTAAAATCCTTCTTCCATTTTCAGATGATTTC
CGTATTTTTGTCGGCGATCTGGGCAACGAAGTAAGCGACGACCACCTTCT
TCGGGCGTTCTCCAAGTACCCTTCCCTCAACAAATCACGCGTCGTTCGTG
ATAAGAGATCGAAGAAGACCAAAGGTTATGGTTTCGTCAGCTTCAAAGAT
CCTCAAGATTATTTGAAAGCAATGAGAGAAATGAACGGTCAGTAAAAAAT
GGTCGAATTTTGAATACAATTGGATGTCTCCAAAACTCAAACACTGACGA
AGAACTTAAATTTGTTNTTTAATAATATTGGATGTCTCCGAAACTCAAAC
ACTGACGAAGAACTCAAATTTGTTCGAGTTATGAAGACTAGATTATAAGG
CATTGTTAACTTAAGGGGCAAGAAAAATTGTTCGAATTAAGGTGACATTT
GAGAGAGGTTCGAATTCTGGAGACTTCAGACGAGTTCATTGTAGGTTTTA
TAAGAAAAGACCATGAATTTTTTTAAATTTCAACATGGTATAAAAGTCAG
TTTTTTTCAAATAGCTTTCGAACTACTTTTTCAAATTTAATGTATGATAG
CTCAAAATTCAAGTAAGATCATCCTCTATACCATAAAATAAGAATAAACT
AAAAATTTAAATCTAGAAGTTCACAATATCTCGACAAACTTGTATACTTT
TTTTTGGTGCACCCGATATAAAATTATGTTAACATTCGTACTTACTATAG
CCGGGAAGGAGAGAAGTTGTTTTCATTTTTATGGAAATGCTGTATAAGCA
GATAGGAGATACTCTTGGGTACCTAATAAACGGGGGGTTAGTGCGGGTGG
AAAAATTCTCGAAATTTAATAAGCGGGGAGAGGGTTGGAATGAAAATATC
CTGGAAAATTCCTTAAAAGGAGGCTAAAGGCTTGGGGACACGAGAAGTTT
TTTTCGCGTCGGTGCAATGCAACATGCTCTTTCCCACCAACACAAGAAAA
AAGGTGTCTACACGGTTTCTTTTTTGTTTCATTGGACAAAAAGTGAAGGA
AATACCCTCAAAGAGAGTACTTTAATTTAAACGATGTCATTTTATAAAGA
TTCCTAATAAATTCTCAATTTATTCACAGGTAAATACGTTGGTAACAGAC
CAATCAAGTTACGCAAAAGTAATTGGAAAGATCGAAACATCATGACAGCA
AAGAAGAAAGAAAAGGAAAAGAAGAAGCTTGGCTTACGGTGAAAGTTTGG
GGATCTGCAAGTACACGTTGACCTGATTTGGCCGAGATTATTATTTTTTC
CTCGATCGTAGCTTCGAGAAGAATACAATCGATTTTCACATCGTATTGTT
GTTGAGATGAAATAGATTGAGATGACAGTTCCAGTTTTTTCCAATTCTAG
TTTTTGGCTTATTATTTGAAGCTGGATTCACATAGTCATTGAATATGCAA
TGGTTGCGTGCTATACAATATTATGTTGTAGGCGAAGATATGGTGTTAGT
CAAAGCTAATTGAACTTTATATCGCAGTATGTTTTCCTAGTTGGCTAAAT
CAATAAACAAAACAATCGAGTAATTATAAAGGGGCGAACGTTGACTACTC
CCTCTCTCTCTTTCTTTCTCTCTCTCTGGTAAAACTTCTTGAAATCAAAA
TTGATTAAGATTTTTTTTTTCCATTACCTCAAATGTACTTCACTTAATAT
CGTTGAAACCTTTTTGTATATTTTTTCTAATAATTTGGCATTTGGAGTTC
TAAATCCTACAAAACTTCGAATCTATGGAAAAAGAGATATCTGGGGTGAC
ATGGTCGTTTAGCATTTTTAACTTGTTTTTTTATGTGGACGTTTTTAGGA
TAATTTGAAGAATATAAACTACGGTATTTTCATTCTATCTTGCTTTTTCT
ATCCAAATTCCCAGATATCAATTTTTATGGGTTTTTTTCTGAGTTTTTAT
ACAGTGCGGTCAGCCATTATTGGAAAAACTTTAATATACTGGTAAAAAAT
TATTTTTACTTGAGTATCACCTAATGGAAATTTTGAAATAATGGCAAATC
TTTTCAATTATCTAGTCGAAGTCAAAGTATTGTGAGTTTATTTCAATGAC
TTTTCTTATTCGACCGAAAAATAATCAAATACAGGATTTATAACGACAAA
ATTGGTTTGTCAGCCAATAATAAGGGAGGGCTGGCAACCTTTTCCTAAAC
GGTAACCACAACTAAAGAACTATATTTATCCTAAAATCGGTAATTTCTTT
GGATTTAATCATTTGTGTAAATGTAGGAAGAATTATCTTTTCAAGCTTTC
GAAAAAAGCTTTTTTGATTACTTTCTAAAGATTGATAAATTGGAAACCAA
TTTTGGAAAATTAAAAGACCAGGTCTCGGTCCCTCGTATATGAAATATTG
AGATAACACTAATTTTCATTAAAAAAAATATATTATTTTTTTGGTAAAAT
ATTAATTAGTTAGGCTCATATTTTATTCTATAACTCATTGCCCTATTTTT
TTTTCAACAAAGGGCGCTCTACAGGACCGTGGAGTAAGCTTTATATTTTT
CATCAGTAATATATTCAAGGTTTTGCTGAACAGACGATTCATTACAAAGT
AATATGTGAGTTACAAAAAAAATCACACAAGTTTTTTTGAGAATGGTGAA
TTTGTGCTATGTTATTTTACTTTTTAATCTTTACTTGGTGTTCTTGACTT
GTGTAACCTCAAATGAAGGTAAATGCTTCTTTAATGGGCAGTCTGTTCCT
CTAAAGAATCCTGCATTGTAAACACGCATGCGTAGTATGTCGTTCTTTAA
ACCATATGTAGTTAATTCCTGTGATAAGCAAAGAGGAATGGATACGTAGG
GGTGGTGCAGGCACTTTCGGTCGGGGTTGGGGATGTCAACATTTGTCGCT
CTTTCATGAAATCTGTCGTTCTTTAAGTAAATGCAGGATTATTTAGATAA
ATCCCCTCTGGGCAATTTCCTACTTTATAAAAGGGCTTAATTTTATTCAA
TAATAACATAATATCATCTATACATACATTGCTAAATTTATTTGGATGTA
ACATACGATTTATCATGTTAGAATATTTATTAGAGTTGACGTACGCACTC
CTTTTATATAAGCATACGGGAAAATCGGATCGAGGCTCAATATGCTTAGC
AAAATCTCGTTTTCAGCCTTAAGTTATCCTTATTTATATGCTTAGACTTA
GATTCGTTTTCCTTGGGTTCATGAAAATTTCGAATTTTTAAATCGGACCA
TTGATTCGGCTCAAAGAATGAAAATTTTCTTTGTAGCTTGGCGCCGTAGG
CGAAATCTTTTGGTATAAGAAAGCTCAAACAGCTTTAAAAGTAACCCTAA
AAAGGTCGGTGCTTTAGAAAAGTTGTACGATTTCTTTTTACATTACAGCT
TGGATGTATGCTTGACATTGTCCTTATTTTTTACCGAATTTAAGCCTAAG
CGTTCTTATTTTAAACGTTATGCTTATAAAAAAAGAGTATACTAAATCAG
TTTACTTGTAATCACTCAGAAGTTGATCGCTCCAATTCACTGTCAATGTA
TTTCATTTTACAGCATTGACTGCTTTCTACCCTGAGGATGGCGCAAAGCG
AATGACTTCAAATCGAGTGAAATTGATGCTGGATGTACCTTTCAACTCAA
ATTTTCAAGGGATCGATACAAAAGATCATGTTTATGTAAGTTCCTAAATA
CACGTACTTATTTGGATCTCAACCGCAGAATCCCTTAAATTTCCAATTCC
GGTGGAAAGAAGTAGCCATCGAAGCAAAATTTTATACAAATGATGTGTTC
TGATTTCTAGGAAATCTCTGTTATACTCTTTGTCTTCCTAACTGTGAACT
GTTTAGCATAGTGCCTTGTACTTAAAGAGCAGAAACTTTCGCGAATATTA
CTCTTGAAAGGAATTTAGCTGATATAACCTTCGCGAATTTTATAAAATAA
TCTTTTGTTTTCTTCAGATAAGAAACCATGGCTATATTTCTACTGAGGGA
TATCATTACAGTAAGAAGGGAAATTATATCAAAGATCATCGAAGAGGGTT
TTACCCTTTTTGTGGTGATTTCGAACCAGGAAAGAAAGGTTATGTCAGCT
TCTATCAATCTCAAGCAAAGGTACGTGTTTTTTTTAATAAGAATTTCCAA
AATTTTTGAAGTCTTCGGATTATTTTAACTTTTTGGGTTTCAAGCCTAAA
AATGTTCTTATTTTCACCCTTTTTAGAGTATTTTAGTCCATTTTCTAAGA
AATTTGGTTTTCTTAGAGTCCACAAAGCCTTAAAATATTCTTAACTTGTT
CTTAATATTTCGGCCATCGAAGCCTTATGTTCTTATAGTTTGTTCTTATA
AAAGGCATGCAATAAAGTAGCCTCTCTATAACTCGAATCCCTCTTTCTGG
CACCTTCTAATTTTCTACGTACAAAACTCTCTGCAATGAAATAATTGTTC
CTTTTTTAATTACTTGTATGGACAAATTGAATTGTCAATGTCGGCTTCTC
TCTATTTCGGATTCTCTCGCAGGCTAAAAGAACATGCATTGGTAATTCCT
TCTTTATTTGTGTTTCCAATTTTACTTCCTTTTGACAATCTATTAATAAT
ATACCAGAAAACTTAGACATTGAATATTGTGATGTTTCCTTACTGGCCCG
GTAAGGCGAGACCAATTTAATTTGTTGTTCTACGGGCAGATCGTTAGCAA
AATATATTTCAGTCAGTCGGTAAAATAAGAATAAATTTTTCATTTATCAG
GGTTGGTAAACACCGAAAATGTTTTCCAAAAAAATATCTGGTTCAAAAGT
TCACTTTATTTTATCTTCGATGAAGATCATAATAAAATCATAGTGTATGG
AATGCTTGATTTTCTAAATTTTTCAATTTCTTGAATTAATTTTAAGCTTT
ATTCAAATTTGATTCTTACAAATAACTTGTGTGTAAAATATATTGTAGTG
GAAATTCAATGTTATTATTTTTTTTGACTTTAGCAAAAATAGGGTCGGTC
GGGCCTGTAGAACAACAAATTAAATTTGTCTCGCCTAATTGATAAAACTG
ACAACAACAAAAACGTTTAATCGTATAACTTATTCATTATTTCCAGAACA
TTAAAGATTTGATTGATAGCGATCTTCAAAAAATGAACGTAGCAAACTTT
GTTCCACTCAACACCCTTGTTGTTACCTATAAAATTGGTCGAAAAAGGTG
AGAATGTTGTTGCTATGCACATTTCTTTCTATAAGCAAACCATGTTGCTC
AGGAGGCACGAGCAGGCATGAAATCTGCTTAATCTTTTTCACTAAATCGC
AAATGTAAAGCTTTTTAGGAAATCTTAAACTATGGCAAACGATAGTTCAA
GACCCAATAGCACATTTCTCAGAAATTGAACTACTTACAATGGTTGCTTA
GCAGCTCTAGCCCAGGCAGAGATTAAAATTAAGTGTTCTTCTTAATTTCC
CGGTGGAGATGGGATTTTGGAGACTTCGTCCTCCCACATTTAATCTGATA
TGCTTTGCAATTTGTGCTTATATTGATTCTTTTTTTAGACCTACCTCAGA
GGTAGGTAGGAGGTGCCTAGACGATGCTATCGTCCGTATAATATAATATT
ATGATATAACATAGTTTGTATACTATAAAACGTAATATGTTTCGCGGCGG
ATAGAGTCTGTGTCAGCTACCCCCGAAAAAAAATCCCGTCTTCACGTTTG
TTCCTCTTTTACTTAGATGAAACTCGTCTTAGACTATAACATAGTCTAGG
AGGTGCCCAAAAAACCAGTTTTTTTTTGGCATTTTCTCAAGATTTCACCA
TTAGTTTTTTGTTTTTTTTGCATAAAGATGCGTATTAGCAATGCCCAAAA
CATGGTCAAGTCCGATTTTTGAGAAATCTTTTTGCCGGAGATCGCCGTTT
TTGCAGATTTTCATTGGACTTTTTCTTCGCTTTTTCGCACATAAAAATTA
TTGATAACATTGCCCACCATCAAGCATGATTCAATTGTCAATGAAACTGA
TTTTTGCAACCGGAACTTTCTATTTCTCTTTTCTCTACTCCCCTTCCCTC
TCCCCCATCAACAATCAATGATGAAATTTAATGCATTTTCGCTAACCGCT
ATATTTTCTGATTGATTGTTTTTATGTTTCTCCTTATTGCTATCTAACTT
TCATCTTCAGGTAGGTTCATTCAGCATCTAGCTTGTTAGTCCCAATAATA
ATTAATCAAACTTTCAGGAGGAAAAACCTTAACCATTAATTTTTCTCATT
ATTGCTATCTAACTTCCATCATCAGGTAGGTTCATTCAGCATCTAGCTTG
TTTGGTCCTAATAATAATTAATCAAACTTTCAGGAGGAAAAACCTTAACC
ATTACCAAATCATCATAACCTACAACACATCCAAAGTGTACATCATTACA
ATTTACAAGGAATTATATGACGCAGCAATTGTTGGTTTTAATATTACTAA
TTGCCAATCCACCATTATTACTCCTCAAAGAGCAACGGATATGGCT

Coding sequence (CDS) from alignment at scaffold_234:516054..525349-

>TCONS_00053857 ID=TCONS_00053857|Name=TCONS_00053857|organism=Clytia hemisphaerica|type=CDS|length=4515bp|location=Sequence derived from alignment at scaffold_234:516054..525349- (Clytia hemisphaerica)
GTAAATACGTTGGTAACAGACCAATCAAGTTACGCAAAAGTAATTGGAAA
GATCGAAACATCATGACAGCAAAGAAGAAAGAAAAGGAAAAGAAGAAGCT
TGGCTTACGGTGAATGATTTCCGTATTTTTGTCGGCGATCTGGGCAACGA
AGTAAGCGACGACCACCTTCTTCGGGCGTTCTCCAAGTACCCTTCCCTCA
ACAAATCACGCGTCGTTCGTGATAAGAGATCGAAGAAGACCAAAGGTTAT
GGTTTCGTCAGCTTCAAAGATCCTCAAGATTATTTGAAAGCAATGAGAGA
AATGAACGGAAACAATTTTGGTGGATCAGCGAACAATACATCAAGCAACG
ATAACATGTCATCATCTGTTTCAAATATCAACAATCCTACCGCTGACAAT
GTGGTAGGTGGACCCGGTGGGGGTGGTGGTGAAAAGAAGAAGAAAGATAA
GAAGAAGACGGTTGTTCGTGTGGCAGGGAGCAGTGTTTGGGAAGATGATA
GCCTTCTCGATTGGGATCCTAGTTTGAGCAGGAGATTTCTGGCAATCTCC
CTCCTCCACCAAAAATGCCAAAGATGCCCAACATGATGGGTCCACCTGGC
TTCATGGGCCGTCCTCCCATGCCCCCTCCACCATTCATGAACCAAAACCG
TAATGGTAGTGGAGGGCTGCCACCCATGTCATTCCCTCCTGGTCCCCCTC
CTCAGATGCCACCAAATATGTTTGGGGGACCACCAGGTGGCCTACCACCA
CCACCGGCAATGCGTGGTCTCCCTGTTCCTCCACCAATGATGGTCCCTCC
TCCCATGATGCCAATGCCGATTCCTCCAATGGCGATGCCCTCATCTGCGC
CAGATGGGGGATGACAACAAAAGAAAACTCAACCTGGAAGATGAAATGAA
CAGGTAAATACGTTGGTAACAGACCAATCAAGTTACGCAAAAGTAATTGG
AAAGATCGAAACATCATGACAGCAAAGAAGAAAGAAAAGGAAAAGAAGAA
GCTTGGCTTACGGTGAATGATTTCCGTATTTTTGTCGGCGATCTGGGCAA
CGAAGTAAGCGACGACCACCTTCTTCGGGCGTTCTCCAAGTACCCTTCCC
TCAACAAATCACGCGTCGTTCGTGATAAGAGATCGAAGAAGACCAAAGGT
TATGGTTTCGTCAGCTTCAAAGATCCTCAAGATTATTTGAAAGCAATGAG
AGAAATGAACGGAAACAATTTTGGTGGATCAGCGAACAATACATCAAGCA
ACGATAACATGTCATCATCTGTTTCAAATATCAACAATCCTACCGCTGAC
AATGTGGTAGGTGGACCCGGTGGGGGTGGTGGTGAAAAGAAGAAGAAAGA
TAAGAAGAAGACGGTTGTTCGTGTGGCAGGGAGCAGTGTTTGGGAAGATG
ATAGCCTTCTCGATTGGGATCCTAGTTTGAGCAGGAGATTTCTGGCAATC
TCCCTCCTCCACCAAAAATGCCAAAGATGCCCAACATGATGGGTCCACCT
GGCTTCATGGGCCGTCCTCCCATGCCCCCTCCACCATTCATGAACCAAAA
CCGTAATGGTAGTGGAGGGCTGCCACCCATGTCATTCCCTCCTGGTCCCC
CTCCTCAGATGCCACCAAATATGTTTGGGGGACCACCAGGTGGCCTACCA
CCACCACCGGCAATGCGTGGTCTCCCTGTTCCTCCACCAATGATGGTCCC
TCCTCCCATGATGCCAATGCCGATTCCTCCAATGGCGATGCCCTCATCTG
CGCCAGATGGGGGATGACAACAAAAGAAAACTCAACCTGGAAGATGAAAT
GAACAGGTAAATACGTTGGTAACAGACCAATCAAGTTACGCAAAAGTAAT
TGGAAAGATCGAAACATCATGACAGCAAAGAAGAAAGAAAAGGAAAAGAA
GAAGCTTGGCTTACGGTGAATGATTTCCGTATTTTTGTCGGCGATCTGGG
CAACGAAGTAAGCGACGACCACCTTCTTCGGGCGTTCTCCAAGTACCCTT
CCCTCAACAAATCACGCGTCGTTCGTGATAAGAGATCGAAGAAGACCAAA
GGTTATGGTTTCGTCAGCTTCAAAGATCCTCAAGATTATTTGAAAGCAAT
GAGAGAAATGAACGGAAACAATTTTGGTGGATCAGCGAACAATACATCAA
GCAACGATAACATGTCATCATCTGTTTCAAATATCAACAATCCTACCGCT
GACAATGTGGTAGGTGGACCCGGTGGGGGTGGTGGTGAAAAGAAGAAGAA
AGATAAGAAGAAGACGGTTGTTCGTGTGGCAGGGAGCAGTGTTTGGGAAG
ATGATAGCCTTCTCGATTGGGATCCTAGTTTGAGCAGGAGATTTCTGGCA
ATCTCCCTCCTCCACCAAAAATGCCAAAGATGCCCAACATGATGGGTCCA
CCTGGCTTCATGGGCCGTCCTCCCATGCCCCCTCCACCATTCATGAACCA
AAACCGTAATGGTAGTGGAGGGCTGCCACCCATGTCATTCCCTCCTGGTC
CCCCTCCTCAGATGCCACCAAATATGTTTGGGGGACCACCAGGTGGCCTA
CCACCACCACCGGCAATGCGTGGTCTCCCTGTTCCTCCACCAATGATGGT
CCCTCCTCCCATGATGCCAATGCCGATTCCTCCAATGGCGATGCCCTCAT
CTGCGCCAGATGGGGGATGACAACAAAAGAAAACTCAACCTGGAAGATGA
AATGAACAGGTAAATACGTTGGTAACAGACCAATCAAGTTACGCAAAAGT
AATTGGAAAGATCGAAACATCATGACAGCAAAGAAGAAAGAAAAGGAAAA
GAAGAAGCTTGGCTTACGGTGAATGATTTCCGTATTTTTGTCGGCGATCT
GGGCAACGAAGTAAGCGACGACCACCTTCTTCGGGCGTTCTCCAAGTACC
CTTCCCTCAACAAATCACGCGTCGTTCGTGATAAGAGATCGAAGAAGACC
AAAGGTTATGGTTTCGTCAGCTTCAAAGATCCTCAAGATTATTTGAAAGC
AATGAGAGAAATGAACGGAAACAATTTTGGTGGATCAGCGAACAATACAT
CAAGCAACGATAACATGTCATCATCTGTTTCAAATATCAACAATCCTACC
GCTGACAATGTGGTAGGTGGACCCGGTGGGGGTGGTGGTGAAAAGAAGAA
GAAAGATAAGAAGAAGACGGTTGTTCGTGTGGCAGGGAGCAGTGTTTGGG
AAGATGATAGCCTTCTCGATTGGGATCCTAGTTTGAGCAGGAGATTTCTG
GCAATCTCCCTCCTCCACCAAAAATGCCAAAGATGCCCAACATGATGGGT
CCACCTGGCTTCATGGGCCGTCCTCCCATGCCCCCTCCACCATTCATGAA
CCAAAACCGTAATGGTAGTGGAGGGCTGCCACCCATGTCATTCCCTCCTG
GTCCCCCTCCTCAGATGCCACCAAATATGTTTGGGGGACCACCAGGTGGC
CTACCACCACCACCGGCAATGCGTGGTCTCCCTGTTCCTCCACCAATGAT
GGTCCCTCCTCCCATGATGCCAATGCCGATTCCTCCAATGGCGATGCCCT
CATCTGCGCCAGATGGGGGATGACAACAAAAGAAAACTCAACCTGGAAGA
TGAAATGAACAGGTAAATACGTTGGTAACAGACCAATCAAGTTACGCAAA
AGTAATTGGAAAGATCGAAACATCATGACAGCAAAGAAGAAAGAAAAGGA
AAAGAAGAAGCTTGGCTTACGGTGAATGATTTCCGTATTTTTGTCGGCGA
TCTGGGCAACGAAGTAAGCGACGACCACCTTCTTCGGGCGTTCTCCAAGT
ACCCTTCCCTCAACAAATCACGCGTCGTTCGTGATAAGAGATCGAAGAAG
ACCAAAGGTTATGGTTTCGTCAGCTTCAAAGATCCTCAAGATTATTTGAA
AGCAATGAGAGAAATGAACGGAAACAATTTTGGTGGATCAGCGAACAATA
CATCAAGCAACGATAACATGTCATCATCTGTTTCAAATATCAACAATCCT
ACCGCTGACAATGTGGTAGGTGGACCCGGTGGGGGTGGTGGTGAAAAGAA
GAAGAAAGATAAGAAGAAGACGGTTGTTCGTGTGGCAGGGAGCAGTGTTT
GGGAAGATGATAGCCTTCTCGATTGGGATCCTAGTTTGAGCAGGAGATTT
CTGGCAATCTCCCTCCTCCACCAAAAATGCCAAAGATGCCCAACATGATG
GGTCCACCTGGCTTCATGGGCCGTCCTCCCATGCCCCCTCCACCATTCAT
GAACCAAAACCGTAATGGTAGTGGAGGGCTGCCACCCATGTCATTCCCTC
CTGGTCCCCCTCCTCAGATGCCACCAAATATGTTTGGGGGACCACCAGGT
GGCCTACCACCACCACCGGCAATGCGTGGTCTCCCTGTTCCTCCACCAAT
GATGGTCCCTCCTCCCATGATGCCAATGCCGATTCCTCCAATGGCGATGC
CCTCATCTGCGCCAGATGGGGGATGACAACAAAAGAAAACTCAACCTGGA
AGATGAAATGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033987XLOC_033987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053857-exon-scaffold_234-1575043694:525195..525349TCONS_00053857-exon-scaffold_234-1575043694:525195..525349Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1575043694:523443..523774TCONS_00053857-exon-scaffold_234-1575043694:523443..523774Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1575043694:522845..523057TCONS_00053857-exon-scaffold_234-1575043694:522845..523057Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1575043694:522313..522507TCONS_00053857-exon-scaffold_234-1575043694:522313..522507Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1575043694:519832..521420TCONS_00053857-exon-scaffold_234-1575043694:519832..521420Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1575043694:518865..518986TCONS_00053857-exon-scaffold_234-1575043694:518865..518986Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1575043694:518430..518582TCONS_00053857-exon-scaffold_234-1575043694:518430..518582Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1575043694:517353..517453TCONS_00053857-exon-scaffold_234-1575043694:517353..517453Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1575043694:516054..516216TCONS_00053857-exon-scaffold_234-1575043694:516054..516216Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1510915933:525195..525349TCONS_00053857-exon-scaffold_234-1510915933:525195..525349Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1510915933:523443..523774TCONS_00053857-exon-scaffold_234-1510915933:523443..523774Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1510915933:522845..523057TCONS_00053857-exon-scaffold_234-1510915933:522845..523057Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1510915933:522313..522507TCONS_00053857-exon-scaffold_234-1510915933:522313..522507Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1510915933:519832..521420TCONS_00053857-exon-scaffold_234-1510915933:519832..521420Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1510915933:518865..518986TCONS_00053857-exon-scaffold_234-1510915933:518865..518986Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1510915933:518430..518582TCONS_00053857-exon-scaffold_234-1510915933:518430..518582Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1510915933:517353..517453TCONS_00053857-exon-scaffold_234-1510915933:517353..517453Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1510915933:516054..516216TCONS_00053857-exon-scaffold_234-1510915933:516054..516216Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1491911889:525195..525349TCONS_00053857-exon-scaffold_234-1491911889:525195..525349Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1491911889:523443..523774TCONS_00053857-exon-scaffold_234-1491911889:523443..523774Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1491911889:522845..523057TCONS_00053857-exon-scaffold_234-1491911889:522845..523057Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1491911889:522313..522507TCONS_00053857-exon-scaffold_234-1491911889:522313..522507Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1491911889:519832..521420TCONS_00053857-exon-scaffold_234-1491911889:519832..521420Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1491911889:518865..518986TCONS_00053857-exon-scaffold_234-1491911889:518865..518986Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1491911889:518430..518582TCONS_00053857-exon-scaffold_234-1491911889:518430..518582Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1491911889:517353..517453TCONS_00053857-exon-scaffold_234-1491911889:517353..517453Clytia hemisphaericaexon
TCONS_00053857-exon-scaffold_234-1491911889:516054..516216TCONS_00053857-exon-scaffold_234-1491911889:516054..516216Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053857-proteinTCONS_00053857-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:516054..525349 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.183823	0.34983	0.40743	0	0.443942	0.335744	0.207365	0.204642	0.294299	0	0	0.229594	1.65857	0	0.102683	0	0.807883	0.971764	2.27126	5.02259	1.82751	1.1916	0.822239	3.15445	3.74988	6.30904	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034215RBM42_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00053857 vs. Swiss-Prot (Human)
Match: RBM42 (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.253e-37
Identity = 88/122 (72.13%), Postives = 104/122 (85.25%), Query Frame = 1 
Query:  640 VVRVAGSSVWEDDSLLDWDPNDFRIFVGDLGNEVSDDHLLRAFSKYPSLNXXXXXXXXXXXXXXGYGFVSFKDPQDYLKAMREMNGKYVGNRPIKLRKSNWKDRNIMTAXXXXXXXXXLGLR 1005
             +R A  S WED SLL+WD +DFRIF GDLGNEV+DD L RAFS++PS  K++V+RDKR+ KTKGYGFVSFKDP DY++AMREMNGKYVG+RPIKLRKS WKDRN+   +KK+KEKKKLGLR
Sbjct:  359 CIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 480
The following BLAST results are available for this feature:
BLAST of TCONS_00053857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM421.253e-3772.13RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
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