TCONS_00053865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053865
Unique NameTCONS_00053865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053865 ID=TCONS_00053865|Name=TCONS_00053865|organism=Clytia hemisphaerica|type=transcript|length=548bp
gcacaatgatgtaaaatggcaatgcccaaaattatacattacttccatta
aattctaattattcgttttataaataggtaggtccattaaagtattactt
gttttggTAGCTTTAATAGGCACCATTGCAATGTGTTCTGATATTTTATC
ATTGACCCTACAGCTGATTGGTTTGACATATTgtttgattttacgtcact
tacaaccaatcagctattgggtctgCAATCTAAATCAAAAGACATTACAG
GTGAATATCATCATGAATATAATACTATTTGAGAAGAAACTTTCCTGTAA
TCCTGTTccattgaatttaaaaatattctctCCCCGAATATAATACACAA
GGCACTTGAAGAGCTCGAGGTTTTCCAGGTATAAACACGTCATCAAGAAT
ACTCACGTCTAGATCCCAAGCTGACAAACAACGTCGTTTTAACatttttc
taatattcacaacgtccatttaacgttgaACGTTAAAGATGAACGTtgta
acaacgttgtgtgtcagctgggtcaGGTTTTTTTACATAATGTTAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_234:396676..397223

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053865 ID=TCONS_00053865|Name=TCONS_00053865|organism=Clytia hemisphaerica|type=transcript|length=548bp|location=Sequence derived from alignment at scaffold_234:396676..397223 (Clytia hemisphaerica)
CACTAACATTATGTAAAAAAACCtgacccagctgacacacaacgttgtta
caACGTTCATCTTTAACGTtcaacgttaaatggacgttgtgaatattaga
aaaatGTTAAAACGACGTTGTTTGTCAGCTTGGGATCTAGACGTGAGTAT
TCTTGATGACGTGTTTATACCTGGAAAACCTCGAGCTCTTCAAGTGCCTT
GTGTATTATATTCGGGGagagaatatttttaaattcaatggAACAGGATT
ACAGGAAAGTTTCTTCTCAAATAGTATTATATTCATGATGATATTCACCT
GTAATGTCTTTTGATTTAGATTGcagacccaatagctgattggttgtaag
tgacgtaaaatcaaacAATATGTCAAACCAATCAGCTGTAGGGTCAATGA
TAAAATATCAGAACACATTGCAATGGTGCCTATTAAAGCTAccaaaacaa
gtaatactttaatggacctacctatttataaaacgaataattagaattta
atggaagtaatgtataattttgggcattgccattttacatcattgtgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033994XLOC_033994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053865-exon-scaffold_234-1491911889:396676..397223TCONS_00053865-exon-scaffold_234-1491911889:396676..397223Clytia hemisphaericaexon
TCONS_00053865-exon-scaffold_234-1510915933:396676..397223TCONS_00053865-exon-scaffold_234-1510915933:396676..397223Clytia hemisphaericaexon
TCONS_00053865-exon-scaffold_234-1575043694:396676..397223TCONS_00053865-exon-scaffold_234-1575043694:396676..397223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:396676..397223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08771	0.634146	1.50419	1.2554	0	0.111524	0.134549	0	0.379601	0.131008	0	0.293265	0.64221	0.154942	0.7896	0.407937	1.04502	0.578039	0.700123	0.866408	1.48063	2.02937	0.434563	0.388417	0.112362	0.107703	0.245825	0.332434	0.372998	1.03155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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