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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053875 ID=TCONS_00053875|Name=TCONS_00053875|organism=Clytia hemisphaerica|type=transcript|length=1255bp
CAAAAGGATAGTGGTAATAGTAGTGGAAATATTTAGTAAgtaataaagta
aaaatagaTCTTCATAAAGTTAAAATTCTATTGTTGTGTTGCACGAGTAT
GTGCcctagatttaaaaaacaatttggatTCTTTAGTAAATTCTTTCAGG
TCTTTGATTTCCCTGATATTTTTCGGGAGTTCGTTAAAAATTTGAGCTTG
GTCCTGAAATGTCTTAGATaagccaaaatcaattttaatacCATCATCCT
GTGAGCGAAGCTTCCGAGGCTGAGTTACTTTCACCAAAGAAAGATATGAA
GgccattttttatcattaaggGCCTTGTAAACAAGTTtggaaacataaaa
atcaataagcTCTTTTATTGGTAACCATTGCATATCGACAACGTCTTTCA
GTGTGGCATATCGGTTTAGGACATACCCTGCAGCAATGTTCTGTATACGT
TGCAGACGATTTAATAAGTAATCGGGAATCTGTCCGAATACGACTATGGA
GTACGCTATTTTCGACAGCACTATAGCTTCAGCGAGTGATTTCCGAACTT
TAAATGGTTTGAAACGTTGGAAATTACGAAGAGCTCGAATGGTACCATGA
CAGGATTTTATAATTTGGTTGATATGGTCGGACCAGGATAGATagacttt
tatcaaaatgaagACCAAGAAGCTTGACGACATCTTTTTGttcaattgat
ttttttgaacaaGAAATAAGATACGAGTAGTCACTACATAATTTGTGATA
TGACGCTAGATGTTTGGTTGAAAAGATGATGTATTGCAGTTTATCAGCAT
TGAACAAGAGATTATGATCAGCTGACCAGGTGGAAAGTGATTCGATATCA
GTCTCGATTTCCCGGATGCATTGAAGTATATCACGAATGTGACGATAAAG
CGTTGTGTCATCAGCATATTGGATACTGAGAGAGGAGATTTGGTCAGATA
ATTCGGTAACATAAAATTGGATGAAACTGGACCCAAAATACTGCCTTGAG
GGACACCATAGTGAATGGGTTGAACGGGTGATCTTTTATCGTTCACTTGC
ACAAATTGCTGACGGTTTGTGAGATAGCTTATAATGATTTGCAATGACAT
GGAACTAAagtttaactttttaagtttacCAATGAGCGTAAAATGGTCGA
TCGTATCGAATGCCGAGTAGTCGATAAGAATTGATAGtgtaatttcactt
ttattcatAGCTTTGATTATATCATCACGTAGTTTTAAGAGTAGCGTTGT
TGTGG Run BLAST on NCBI protein sequence of TCONS_00053875-protein >TCONS_00053875-protein ID=TCONS_00053875-protein|Name=TCONS_00053875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
TTTLLLKLRDDIIKAMNKSEITLSILIDYSAFDTIDHFTLIGKLKKLNFS
SMSLQIIISYLTNRQQFVQVNDKRSPVQPIHYGVPQGSILGPVSSNFMLP
NYLTKSPLSVSNMLMTQRFIVTFVIYFNASGKSRLISNHFPPGQLIIISC
SMLINCNTSSFQPNI Run BLAST on NCBI transcript from alignment at scaffold_234:544153..545407 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053875 ID=TCONS_00053875|Name=TCONS_00053875|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at scaffold_234:544153..545407 (Clytia hemisphaerica)
CCACAACAACGCTACTCTTAAAACTACGTGATGATATAATCAAAGCTatg
aataaaagtgaaattacaCTATCAATTCTTATCGACTACTCGGCATTCGA
TACGATCGACCATTTTACGCTCATTGgtaaacttaaaaagttaaactTTA
GTTCCATGTCATTGCAAATCATTATAAGCTATCTCACAAACCGTCAGCAA
TTTGTGCAAGTGAACGATAAAAGATCACCCGTTCAACCCATTCACTATGG
TGTCCCTCAAGGCAGTATTTTGGGTCCAGTTTCATCCAATTTTATGTTAC
CGAATTATCTGACCAAATCTCCTCTCTCAGTATCCAATATGCTGATGACA
CAACGCTTTATCGTCACATTCGTGATATACTTCAATGCATCCGGGAAATC
GAGACTGATATCGAATCACTTTCCACCTGGTCAGCTGATCATAATCTCTT
GTTCAATGCTGATAAACTGCAATACATCATCTTTTCAACCAAACATCTAG
CGTCATATCACAAATTATGTAGTGACTACTCGTATCTTATTTCttgttca
aaaaaatcaattgaaCAAAAAGATGTCGTCAAGCTTCTTGGTcttcattt
tgataaaagtctATCTATCCTGGTCCGACCATATCAACCAAATTATAAAA
TCCTGTCATGGTACCATTCGAGCTCTTCGTAATTTCCAACGTTTCAAACC
ATTTAAAGTTCGGAAATCACTCGCTGAAGCTATAGTGCTGTCGAAAATAG
CGTACTCCATAGTCGTATTCGGACAGATTCCCGATTACTTATTAAATCGT
CTGCAACGTATACAGAACATTGCTGCAGGGTATGTCCTAAACCGATATGC
CACACTGAAAGACGTTGTCGATATGCAATGGTTACCAATAAAAGAgctta
ttgatttttatgtttccaAACTTGTTTACAAGGCccttaatgataaaaaa
tggcCTTCATATCTTTCTTTGGTGAAAGTAACTCAGCCTCGGAAGCTTCG
CTCACAGGATGATGgtattaaaattgattttggcttATCTAAGACATTTC
AGGACCAAGCTCAAATTTTTAACGAACTCCCGAAAAATATCAGGGAAATC
AAAGACCTGAAAGAATTTACTAAAGAatccaaattgttttttaaatctag
gGCACATACTCGTGCAACACAACAATAGAATTTTAACTTTATGAAGAtct
atttttactttattacTTACTAAATATTTCCACTACTATTACCACTATCC
TTTTG Coding sequence (CDS) from alignment at scaffold_234:544153..545407 >TCONS_00053875 ID=TCONS_00053875|Name=TCONS_00053875|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_234:544153..545407 (Clytia hemisphaerica)
ACAACAACGCTACTCTTAAAACTACGTGATGATATAATCAAAGCTatgaa
taaaagtgaaattacaCTATCAATTCTTATCGACTACTCGGCATTCGATA
CGATCGACCATTTTACGCTCATTGgtaaacttaaaaagttaaactTTAGT
TCCATGTCATTGCAAATCATTATAAGCTATCTCACAAACCGTCAGCAATT
TGTGCAAGTGAACGATAAAAGATCACCCGTTCAACCCATTCACTATGGTG
TCCCTCAAGGCAGTATTTTGGGTCCAGTTTCATCCAATTTTATGTTACCG
AATTATCTGACCAAATCTCCTCTCTCAGTATCCAATATGCTGATGACACA
ACGCTTTATCGTCACATTCGTGATATACTTCAATGCATCCGGGAAATCGA
GACTGATATCGAATCACTTTCCACCTGGTCAGCTGATCATAATCTCTTGT
TCAATGCTGATAAACTGCAATACATCATCTTTTCAACCAAACATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053875-exon-scaffold_234-1491911889:544153..545407 | TCONS_00053875-exon-scaffold_234-1491911889:544153..545407 | Clytia hemisphaerica | exon |
| TCONS_00053875-exon-scaffold_234-1510915933:544153..545407 | TCONS_00053875-exon-scaffold_234-1510915933:544153..545407 | Clytia hemisphaerica | exon |
| TCONS_00053875-exon-scaffold_234-1575043694:544153..545407 | TCONS_00053875-exon-scaffold_234-1575043694:544153..545407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:544153..545407 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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