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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053879 ID=TCONS_00053879|Name=TCONS_00053879|organism=Clytia hemisphaerica|type=transcript|length=1019bp
TGGTTCGAAAGCAGTATAAACTTCTTTGTACTGAAGAAACAGAATGGAAC
TTGAGTGGGGATGAGAAGAGCCCATTTTCGGATGAAAACTCTGAAATTTC
AACTGAATTGGTAGACGTTGTACGTGGACTAATGCCATCCACCAGTGTTG
ATGAAATACAAAGTGCCGTATACATTAGTTTCAATTCAAAAGTAGACACC
AAGAAGAAAAAAGCAAGAATTAGAGACGAATTCAACTCGTTGATGGCAAG
AAAGGGCAGAAAAGATTATAAAGTGGCAAAACGAAAACTGTCGTTAGGAA
AAATCAAATTCGATCAAAAGACAAAGGCAACTTGGAGCAAACTAATTACC
TCTGACATGGTCTCTTCAGAAGATGAAGAAATCCAAGATAACGAGAAGAC
ATTTGTCACCCGCCCAAAACCAAATCGTCCTGCAAAAGtatcaaagtttt
ttcaaaaattggacgAGGTGGACAGACAAACAATGGCTACAACATCGAGG
TTTCGAGCTAACAAAAGGATGAAAGGAAATGTAAGTGAAAATGAGATCTC
ATTTTCAAAAGAACATAAAGAAGCAATGGCTTCATTGGAAATAACTTATG
ATTAATTTTTATGTGACAAATTTATATATTTCCTTTGCTTTTTCTCACGT
TTTGTgaattttcctttcaaaattttacaatgTTTTCTAATGGAAAGATG
AACAGGCTTACCAGATTTTCTAGTCtctaatatttctaaatctcTAGCTA
ATTTCTTcttcacccaggacattcttgtTCCACCCAGACCCCTGTCTATT
AGAGACCACAGAGTACTAAAATTTAGTTCACACCAAAAAAGACACATTTA
TAGAGacatgtttttattatttttaagctTGTAACATTTcacatttattt
atttcttagaggattgtaaatattttaagttctttactactctcgggtac
gtaatagccgtcccccctccccgctaattaatttttcgaaaattttccac
ccaggacattcttattcca Run BLAST on NCBI protein sequence of TCONS_00053879-protein >TCONS_00053879-protein ID=TCONS_00053879-protein|Name=TCONS_00053879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
VRKQYKLLCTEETEWNLSGDEKSPFSDENSEISTELVDVVRGLMPSTSVD
EIQSAVYISFNSKVDTKKKKARIRDEFNSLMARKGRKDYKVAKRKLSLGK
IKFDQKTKATWSKLITSDMVSSEDEEIQDNEKTFVTRPKPNRPAKVSKFF
QKLDEVDRQTMATTSRFRANKRMKGNVSENEISFSKEHKEAMASLEITYD Run BLAST on NCBI transcript from alignment at scaffold_235:34528..36270+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053879 ID=TCONS_00053879|Name=TCONS_00053879|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at scaffold_235:34528..36270+ (Clytia hemisphaerica)
TGGTTCGAAAGCAGTATAAACTTCTTTGTACTGAAGAAACAGAATGGAAC
TTGAGTGGGGATGAGAAGAGGTGAGTTTTTTACAATATGCACAAACCTTT
TGAGAATAAAAAAGTGATCTTATTAAATGTGGATATCTGAACATAATAGA
AATTTGACAGTTAAAATTTTGAGTACCCTGTAAAATTTTATATCTAATTT
TACTTAGAAAAGCTGTTAATAACAGAAacgtgaaaaaattcaaattgaat
cAGGGACCGGACAGGTTCTGTTTAGTCCCAATCTTTTTACTGATAATTAT
ACAAAAGGATTGacattttgagtattttttctaattcaaaacatttcatt
tattttaagCCCATTTTCGGATGAAAACTCTGAAATTTCAACTGAATTGG
TAGACGTTGTACGTGGACTAATGCCATCCACCAGTGTTGATGAAATACAA
AGTAAGTATCTAGAAACTTTTGCTGAAAGTCAGCCTAAATGTTAGTCAAA
GGTGTATATTATTGTTGCATTTCTATTGGACTCTTGTTTAAAATAACTAT
TTGTATGGCTTTGTTTTTTCTGTTTGTCTTTTCTTCTACCTTCAGCTGTA
CTTTCTGATTGTTTTGTGTGTCTAtcataaaattcaataaatattATTCT
CAGGTGCCGTATACATTAGTTTCAATTCAAAAGTAGACACCAAGAAGAAA
AAAGCAAGAATTAGAGACGAATTCAACTCGTTGATGGCAAGAAAGGGCAG
AAAAGATTATGTAAGTTCTTGGGGTTTATAACATTTTAATACATGAAAAG
ATGGCtccaaaaaaacttattttgaattcttccatcttttattttatttt
ttataggaCTTTATTAGTGAAGCTTTTTTGTATAATATCTTTTGACCTCC
CTTTTTTATTGCTCCAGTTGCATTCCTATGCAAACAATTGTTTTTTCAAT
TGCTATTTATTAATATCTTAATatctttcttttatttcaacAGAAAGTGG
CAAAACGAAAACTGTCGTTAGGAAAAATCAAATTCGATCAAAAGACAAAG
GCAACTTGGAGCAAACTAATTACCTCTGACATGGTCTCTTCAGAAGATGA
AGAAATCCAAGATAACGAGAAGACATTTGTCACCCGCCCAAAACCAAATC
GTCCTGCAAAAGtatcaaagttttttcaaaaattggacgAGGTGGACAGA
CAAACAATGGCTACAACATCGAGGTTTCGAGCTAACAAAAGGATGAAAGG
AAATGTAAGTGAAAATGAGATCTCATTTTCAAAAGAACATAAAGAAGCAA
TGGCTTCATTGGAAATAACTTATGATTAATTTTTATGTGACAAATTTATA
TATTTCCTTTGCTTTTTCTCACGTTTTGTgaattttcctttcaaaatttt
acaatgTTTTCTAATGGAAAGATGAACAGGCTTACCAGATTTTCTAGTCt
ctaatatttctaaatctcTAGCTAATTTCTTcttcacccaggacattctt
gtTCCACCCAGACCCCTGTCTATTAGAGACCACAGAGTACTAAAATTTAG
TTCACACCAAAAAAGACACATTTATAGAGacatgtttttattatttttaa
gctTGTAACATTTcacatttatttatttcttagaggattgtaaatatttt
aagttctttactactctcgggtacgtaatagccgtcccccctccccgcta
attaatttttcgaaaattttccacccaggacattcttattcca Coding sequence (CDS) from alignment at scaffold_235:34528..36270+ >TCONS_00053879 ID=TCONS_00053879|Name=TCONS_00053879|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_235:34528..36270+ (Clytia hemisphaerica)
GTTCGAAAGCAGTATAAACTTCTTTGTACTGAAGAAACAGAATGGAACTT
GAGTGGGGATGAGAAGAGCCCATTTTCGGATGAAAACTCTGAAATTTCAA
CTGAATTGGTAGACGTTGTACGTGGACTAATGCCATCCACCAGTGTTGAT
GAAATACAAAGTGCCGTATACATTAGTTTCAATTCAAAAGTAGACACCAA
GAAGAAAAAAGCAAGAATTAGAGACGAATTCAACTCGTTGATGGCAAGAA
AGGGCAGAAAAGATTATAAAGTGGCAAAACGAAAACTGTCGTTAGGAAAA
ATCAAATTCGATCAAAAGACAAAGGCAACTTGGAGCAAACTAATTACCTC
TGACATGGTCTCTTCAGAAGATGAAGAAATCCAAGATAACGAGAAGACAT
TTGTCACCCGCCCAAAACCAAATCGTCCTGCAAAAGtatcaaagtttttt
caaaaattggacgAGGTGGACAGACAAACAATGGCTACAACATCGAGGTT
TCGAGCTAACAAAAGGATGAAAGGAAATGTAAGTGAAAATGAGATCTCAT
TTTCAAAAGAACATAAAGAAGCAATGGCTTCATTGGAAATAACTTATGAT
TAAGTTCGAAAGCAGTATAAACTTCTTTGTACTGAAGAAACAGAATGGAA
CTTGAGTGGGGATGAGAAGAGCCCATTTTCGGATGAAAACTCTGAAATTT
CAACTGAATTGGTAGACGTTGTACGTGGACTAATGCCATCCACCAGTGTT
GATGAAATACAAAGTGCCGTATACATTAGTTTCAATTCAAAAGTAGACAC
CAAGAAGAAAAAAGCAAGAATTAGAGACGAATTCAACTCGTTGATGGCAA
GAAAGGGCAGAAAAGATTATAAAGTGGCAAAACGAAAACTGTCGTTAGGA
AAAATCAAATTCGATCAAAAGACAAAGGCAACTTGGAGCAAACTAATTAC
CTCTGACATGGTCTCTTCAGAAGATGAAGAAATCCAAGATAACGAGAAGA
CATTTGTCACCCGCCCAAAACCAAATCGTCCTGCAAAAGtatcaaagttt
tttcaaaaattggacgAGGTGGACAGACAAACAATGGCTACAACATCGAG
GTTTCGAGCTAACAAAAGGATGAAAGGAAATGTAAGTGAAAATGAGATCT
CATTTTCAAAAGAACATAAAGAAGCAATGGCTTCATTGGAAATAACTTAT
GATTAAGTTCGAAAGCAGTATAAACTTCTTTGTACTGAAGAAACAGAATG
GAACTTGAGTGGGGATGAGAAGAGCCCATTTTCGGATGAAAACTCTGAAA
TTTCAACTGAATTGGTAGACGTTGTACGTGGACTAATGCCATCCACCAGT
GTTGATGAAATACAAAGTGCCGTATACATTAGTTTCAATTCAAAAGTAGA
CACCAAGAAGAAAAAAGCAAGAATTAGAGACGAATTCAACTCGTTGATGG
CAAGAAAGGGCAGAAAAGATTATAAAGTGGCAAAACGAAAACTGTCGTTA
GGAAAAATCAAATTCGATCAAAAGACAAAGGCAACTTGGAGCAAACTAAT
TACCTCTGACATGGTCTCTTCAGAAGATGAAGAAATCCAAGATAACGAGA
AGACATTTGTCACCCGCCCAAAACCAAATCGTCCTGCAAAAGtatcaaag
ttttttcaaaaattggacgAGGTGGACAGACAAACAATGGCTACAACATC
GAGGTTTCGAGCTAACAAAAGGATGAAAGGAAATGTAAGTGAAAATGAGA
TCTCATTTTCAAAAGAACATAAAGAAGCAATGGCTTCATTGGAAATAACT
TATGATTAAGTTCGAAAGCAGTATAAACTTCTTTGTACTGAAGAAACAGA
ATGGAACTTGAGTGGGGATGAGAAGAGCCCATTTTCGGATGAAAACTCTG
AAATTTCAACTGAATTGGTAGACGTTGTACGTGGACTAATGCCATCCACC
AGTGTTGATGAAATACAAAGTGCCGTATACATTAGTTTCAATTCAAAAGT
AGACACCAAGAAGAAAAAAGCAAGAATTAGAGACGAATTCAACTCGTTGA
TGGCAAGAAAGGGCAGAAAAGATTATAAAGTGGCAAAACGAAAACTGTCG
TTAGGAAAAATCAAATTCGATCAAAAGACAAAGGCAACTTGGAGCAAACT
AATTACCTCTGACATGGTCTCTTCAGAAGATGAAGAAATCCAAGATAACG
AGAAGACATTTGTCACCCGCCCAAAACCAAATCGTCCTGCAAAAGtatca
aagttttttcaaaaattggacgAGGTGGACAGACAAACAATGGCTACAAC
ATCGAGGTTTCGAGCTAACAAAAGGATGAAAGGAAATGTAAGTGAAAATG
AGATCTCATTTTCAAAAGAACATAAAGAAGCAATGGCTTCATTGGAAATA
ACTTATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053879-exon-scaffold_235-1491911889:34528..34597 | TCONS_00053879-exon-scaffold_235-1491911889:34528..34597 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1510915933:34528..34597 | TCONS_00053879-exon-scaffold_235-1510915933:34528..34597 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1575043694:34528..34597 | TCONS_00053879-exon-scaffold_235-1575043694:34528..34597 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1491911889:34887..34978 | TCONS_00053879-exon-scaffold_235-1491911889:34887..34978 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1510915933:34887..34978 | TCONS_00053879-exon-scaffold_235-1510915933:34887..34978 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1575043694:34887..34978 | TCONS_00053879-exon-scaffold_235-1575043694:34887..34978 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1491911889:35181..35287 | TCONS_00053879-exon-scaffold_235-1491911889:35181..35287 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1510915933:35181..35287 | TCONS_00053879-exon-scaffold_235-1510915933:35181..35287 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1575043694:35181..35287 | TCONS_00053879-exon-scaffold_235-1575043694:35181..35287 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1491911889:35521..36270 | TCONS_00053879-exon-scaffold_235-1491911889:35521..36270 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1510915933:35521..36270 | TCONS_00053879-exon-scaffold_235-1510915933:35521..36270 | Clytia hemisphaerica | exon |
| TCONS_00053879-exon-scaffold_235-1575043694:35521..36270 | TCONS_00053879-exon-scaffold_235-1575043694:35521..36270 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_235 | supercontig | scaffold_235:34528..36270 + |
Blast
The following BLAST results are available for this feature:
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