TCONS_00053887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053887
Unique NameTCONS_00053887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053887 ID=TCONS_00053887|Name=TCONS_00053887|organism=Clytia hemisphaerica|type=transcript|length=268bp
GTTTCATCTATGTGGCGGTTGAATGTTTACGAGTGACTGTACGAGTGATT
GTCTTCAATCTATTAAAGAAACAAAGTGTTAGAGTTTAAATCAGTGAGTC
CAAGAACCAGGTCTTAAGATGTTTTTTGTAAGTTGTTTTGGTTACTTCAA
GAGGTTCAATATTCAGTTCGTTAACAGTCTCATTCCAATCTCTAGTGATG
GTGTTTTTTATGTTATTAGAGCCATATGTTATGGTGAGGGATAAAGAGTG
GGCCAGCCTTTGTCTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_235:57036..57303

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053887 ID=TCONS_00053887|Name=TCONS_00053887|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at scaffold_235:57036..57303 (Clytia hemisphaerica)
ATAAGACAAAGGCTGGCCCACTCTTTATCCCTCACCATAACATATGGCTC
TAATAACATAAAAAACACCATCACTAGAGATTGGAATGAGACTGTTAACG
AACTGAATATTGAACCTCTTGAAGTAACCAAAACAACTTACAAAAAACAT
CTTAAGACCTGGTTCTTGGACTCACTGATTTAAACTCTAACACTTTGTTT
CTTTAATAGATTGAAGACAATCACTCGTACAGTCACTCGTAAACATTCAA
CCGCCACATAGATGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034014XLOC_034014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053887-exon-scaffold_235-1491911889:57036..57303TCONS_00053887-exon-scaffold_235-1491911889:57036..57303Clytia hemisphaericaexon
TCONS_00053887-exon-scaffold_235-1510915933:57036..57303TCONS_00053887-exon-scaffold_235-1510915933:57036..57303Clytia hemisphaericaexon
TCONS_00053887-exon-scaffold_235-1575043694:57036..57303TCONS_00053887-exon-scaffold_235-1575043694:57036..57303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:57036..57303 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.568696	0	0.646011	0	0.621468	0	0	0.982876	3.65235	0.590844	0.776795	0.775715	0.805588	0.331151	1.06613	2.18897	0.448725	0.619938	2.59488	1.69157	3.30035	1.33733	1.82375	0	0.558814	0.799661	2.56026	0	0.659485
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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