TCONS_00053892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053892
Unique NameTCONS_00053892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053892 ID=TCONS_00053892|Name=TCONS_00053892|organism=Clytia hemisphaerica|type=transcript|length=244bp
TATTTGAATTGATTGAACAATTTCAGTGGTCACTAGAAAACCCATATCAT
GTGCTTCTGCTGCTGTTGTATTTTGCGGGCCATGGGTCTTGCAGCATCTG
GGCAAAATGAATTATCCAAAAATTCCTCACAACAAATacaaccatggtct
gaaaatttcgcaaccaagagatacgaagtactttcgttttctaagttttg
aaaacgaaagtgcttcatagctcgagatagcaaaattttcagac
Run BLAST on NCBI

transcript from alignment at scaffold_235:100772..101015

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053892 ID=TCONS_00053892|Name=TCONS_00053892|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at scaffold_235:100772..101015 (Clytia hemisphaerica)
gtctgaaaattttgctatctcgagctatgaagcactttcgttttcaaaac
ttagaaaacgaaagtacttcgtatctcttggttgcgaaattttcagacca
tggttgtATTTGTTGTGAGGAATTTTTGGATAATTCATTTTGCCCAGATG
CTGCAAGACCCATGGCCCGCAAAATACAACAGCAGCAGAAGCACATGATA
TGGGTTTTCTAGTGACCACTGAAATTGTTCAATCAATTCAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034019XLOC_034019Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053892-exon-scaffold_235-1491911889:100772..101015TCONS_00053892-exon-scaffold_235-1491911889:100772..101015Clytia hemisphaericaexon
TCONS_00053892-exon-scaffold_235-1510915933:100772..101015TCONS_00053892-exon-scaffold_235-1510915933:100772..101015Clytia hemisphaericaexon
TCONS_00053892-exon-scaffold_235-1575043694:100772..101015TCONS_00053892-exon-scaffold_235-1575043694:100772..101015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:100772..101015 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.37393	0.822528	2.8651	8.40916	18.1997	7.19083	19.5197	18.2741	9.951	17.6085	17.0912	15.7291	21.317	28.5462	19.6372	28.2697	24.6947	19.4702	48.4186	60.9875	20.3882	35.8007	20.3095	28.1361	0	2.4247	18.5053	20.9837	4.681	6.67687
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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