TCONS_00053906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053906
Unique NameTCONS_00053906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053906 ID=TCONS_00053906|Name=TCONS_00053906|organism=Clytia hemisphaerica|type=transcript|length=760bp
CATGataattacaaagaaaaattcgAAGAGCAAGATAATTTGATCAAACA
ACAAAAGGAGGCTATACAATTGTTGCAGGACAGAGTAACAGAATTGGAAG
GCGCGATGCAAGCAAGGGCAAGTGGACCTGTGGTTGAACCTATTACACCA
GAACTTGCTGATAAGGTACGCAGTATATTCAAATGTAAAGCCAGTACTGG
AAACGAAGTGTGGAATTTCAATTTAAGGTTTGATGCAAAAGAGAATGTCC
ACATCGCAGAACTTTTTGTTGATGAAATCACACCATTCACACCTCACTTT
CATGAAAAGCTTGTTAAAAagGCTTGTAATCGTTATTTCAACCACCTTAA
GAGGACTGAGAAAGAAAAGGACCTGTTAACACCTGAAGAGTTGGAAGCAA
AGACTGTAGCAAACCGTAGATCATCTAGATGCCATAAAaccAGCAAACGT
CTTCAGAAGATAGGCAAAACGATCGAATCACTAGACGAAGAAGAGCAGGA
GATGGTATTGGCAATGACGGGCGAAGTCATGACAGATGAAGAATCTGATG
AAGATGAGAataatgtaaaaataataatgaGGAGAAAATTGAGTTGGAGG
AGCGataaatttgaactttcaatgGAAAAAATCAACTCCAAGACAACTAA
CAAAACTTTAATGTATCGTGTTAATGGCTTGCCGTCCACTCGTCAGCCAT
CTGAAAATACTAACCCTATTTTTGTGagaaatatagaaaatgtaGAGTAG
GTTATTTGTG
Run BLAST on NCBI

protein sequence of TCONS_00053906-protein

>TCONS_00053906-protein ID=TCONS_00053906-protein|Name=TCONS_00053906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
HDNYKEKFEEQDNLIKQQKEAIQLLQDRVTELEGAMQARASGPVVEPITP
ELADKVRSIFKCKASTGNEVWNFNLRFDAKENVHIAELFVDEITPFTPHF
HEKLVKKACNRYFNHLKRTEKEKDLLTPEELEAKTVANRRSSRCHKTSKR
LQKIGKTIESLDEEEQEMVLAMTGEVMTDEESDEDENNVKIIMRRKLSWR
SDKFELSMEKINSKTTNKTLMYRVNGLPSTRQPSENTNPIFVRNIENVE
Run BLAST on NCBI

transcript from alignment at scaffold_236:70490..72582+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053906 ID=TCONS_00053906|Name=TCONS_00053906|organism=Clytia hemisphaerica|type=transcript|length=2093bp|location=Sequence derived from alignment at scaffold_236:70490..72582+ (Clytia hemisphaerica)
CATGataattacaaagaaaaattcgAAGAGCAAGATAATTTGATCAAACA
ACAAAAGGAGGCTATACAATTGTTGCAGGACAGAGTAACAGAATTGGAAG
GCGCGATGCAAGCAAGGGCAAGTGGACCTGTGGTTGAACCTATTACACCA
GAACTTGCTGTGAGTATGAGATTTACGAGGCCTTCACCgctattattgtt
attattattatattatttattcACATTTAACCAGGCTATCTATATCAGAC
TCAATCAGACagaaaaaaagcatttttaagAGGGATTGAAAAAGCCTGAC
AATAAAGCTTAGTACTCACTTGTTGAAAAAGTGGCGTTTAACACTTTAGT
CGCACGCGTCTAATGATAAACGCAGGCGTTTAACTTTTCAGATCATCTAT
GTACTCACTAGGAGCTCTTTAGCAAAGAGAAATAGTAAAAGAGGGGAAAA
GTGaaacgaaatcgaaagtaaaaaccaaaaattacaaaagaattaaaaag
atTTAATCTTGTTTACATTGCGGTGCCTTTGAACTTAAGTTTTTTGATAT
GCGCGtttagatatttttttctaagttcgATAAACGCCGGCGTTTAACAT
TAAACGCGGGCGTATAAATTAAACACCGGCTTTTATTGAGTGTACTCACT
AGAGATCTTATGGTTTTAGACGCGCGTGTATAAAGTTATACACCGGAGTT
TAACACTTAACACTTTTTCAacaagtgagtaccaagcttaaGTGAACTTA
TTCAATTTATTAAAATCAACTTATCATCTTAATTCATGTACAAAACTTTC
TTCAACACATGGACTAGATTTTAACCAGTGATATCTTTAATCCATATTGA
AATcttgatttttcaattctttttatttatgattCTCTTCAGGATAAGGT
ACGCAGTATATTCAAATGTAAAGCCAGTACTGGAAACGAAGTGTGGAATT
TCAATTTAAGGTAAATGCTTAGTAAATTTATGTATTTAAGATTCAATCTT
ATCTAGACAAGTAAATTGATCTTTCAATTCAATGTAAGTTGCCCTGAACT
ATTTCTGACAGTATTTCCTGTTTAAAATGcctcattttgatttttcaatt
ctaTAAGTCACATGGGTTAGAATATAGAATTAAGTAAGGTAGTGTGGTAC
AGTGATTattacttttattacaaaattttcAGGTTTGATGCAAAAGAGAA
TGTCCACATCGCAGAACTTTTTGTTGATGAAATCACACCATTCACACCTC
ACTTTCATGAAAAGCTTGTTAAAAGTAAGAAACTTTccagaaaaataata
acattaaGTTACAAAATAAAACTTACAGAGATGCAATGCTTGAGAAATAT
CATTATTAAGCCCCAAGTCCAATATGATTTTATGGCAATATGTAGTTGTA
TTCTTTTCAAAAGATCTCAATGAATAGACACTTTCCACACACTAAATCTT
AATTTGacctaaattttgatttttcagagGCTTGTAATCGTTATTTCAAC
CACCTTAAGAGGACTGAGAAAGAAAAGGACCTGTTAACACCTGAAGAGTT
GGAAGCAAAGACTGTAGCAAACCGTAGATCATCTAGATGCCATAAAGTAA
GGAAATTGTTATTATTAGCTGACAACTTAAAGTTTAAATAAATTCACCAA
TATGTTCATAAACTACCAAGgaactgaactcaaaaatgtGGCATTTTTTC
AGGCTTTTTGGATAAACTTGTCTTTTCATAGACCTGCGTTGATTGACTTT
CATttccttttgaaattttagaccAGCAAACGTCTTCAGAAGATAGGCAA
AACGATCGAATCACTAGACGAAGAAGAGCAGGAGATGGTATTGGCAATGA
CGGGCGAAGTCATGACAGATGAAGAATCTGATGAAGATGAGAataatgta
aaaataataatgaGGAGAAAATTGAGTTGGAGGAGCGataaatttgaact
ttcaatgGAAAAAATCAACTCCAAGACAACTAACAAAACTTTAATGTATC
GTGTTAATGGCTTGCCGTCCACTCGTCAGCCATCTGAAAATACTAACCCT
ATTTTTGTGagaaatatagaaaatgtaGAGTAGGTTATTTGTG

Coding sequence (CDS) from alignment at scaffold_236:70490..72582+

>TCONS_00053906 ID=TCONS_00053906|Name=TCONS_00053906|organism=Clytia hemisphaerica|type=CDS|length=3750bp|location=Sequence derived from alignment at scaffold_236:70490..72582+ (Clytia hemisphaerica)
CATGataattacaaagaaaaattcgAAGAGCAAGATAATTTGATCAAACA
ACAAAAGGAGGCTATACAATTGTTGCAGGACAGAGTAACAGAATTGGAAG
GCGCGATGCAAGCAAGGGCAAGTGGACCTGTGGTTGAACCTATTACACCA
GAACTTGCTGATAAGGTACGCAGTATATTCAAATGTAAAGCCAGTACTGG
AAACGAAGTGTGGAATTTCAATTTAAGGTTTGATGCAAAAGAGAATGTCC
ACATCGCAGAACTTTTTGTTGATGAAATCACACCATTCACACCTCACTTT
CATGAAAAGCTTGTTAAAAagGCTTGTAATCGTTATTTCAACCACCTTAA
GAGGACTGAGAAAGAAAAGGACCTGTTAACACCTGAAGAGTTGGAAGCAA
AGACTGTAGCAAACCGTAGATCATCTAGATGCCATAAAaccAGCAAACGT
CTTCAGAAGATAGGCAAAACGATCGAATCACTAGACGAAGAAGAGCAGGA
GATGGTATTGGCAATGACGGGCGAAGTCATGACAGATGAAGAATCTGATG
AAGATGAGAataatgtaaaaataataatgaGGAGAAAATTGAGTTGGAGG
AGCGataaatttgaactttcaatgGAAAAAATCAACTCCAAGACAACTAA
CAAAACTTTAATGTATCGTGTTAATGGCTTGCCGTCCACTCGTCAGCCAT
CTGAAAATACTAACCCTATTTTTGTGagaaatatagaaaatgtaGAGTAG
CATGataattacaaagaaaaattcgAAGAGCAAGATAATTTGATCAAACA
ACAAAAGGAGGCTATACAATTGTTGCAGGACAGAGTAACAGAATTGGAAG
GCGCGATGCAAGCAAGGGCAAGTGGACCTGTGGTTGAACCTATTACACCA
GAACTTGCTGATAAGGTACGCAGTATATTCAAATGTAAAGCCAGTACTGG
AAACGAAGTGTGGAATTTCAATTTAAGGTTTGATGCAAAAGAGAATGTCC
ACATCGCAGAACTTTTTGTTGATGAAATCACACCATTCACACCTCACTTT
CATGAAAAGCTTGTTAAAAagGCTTGTAATCGTTATTTCAACCACCTTAA
GAGGACTGAGAAAGAAAAGGACCTGTTAACACCTGAAGAGTTGGAAGCAA
AGACTGTAGCAAACCGTAGATCATCTAGATGCCATAAAaccAGCAAACGT
CTTCAGAAGATAGGCAAAACGATCGAATCACTAGACGAAGAAGAGCAGGA
GATGGTATTGGCAATGACGGGCGAAGTCATGACAGATGAAGAATCTGATG
AAGATGAGAataatgtaaaaataataatgaGGAGAAAATTGAGTTGGAGG
AGCGataaatttgaactttcaatgGAAAAAATCAACTCCAAGACAACTAA
CAAAACTTTAATGTATCGTGTTAATGGCTTGCCGTCCACTCGTCAGCCAT
CTGAAAATACTAACCCTATTTTTGTGagaaatatagaaaatgtaGAGTAG
CATGataattacaaagaaaaattcgAAGAGCAAGATAATTTGATCAAACA
ACAAAAGGAGGCTATACAATTGTTGCAGGACAGAGTAACAGAATTGGAAG
GCGCGATGCAAGCAAGGGCAAGTGGACCTGTGGTTGAACCTATTACACCA
GAACTTGCTGATAAGGTACGCAGTATATTCAAATGTAAAGCCAGTACTGG
AAACGAAGTGTGGAATTTCAATTTAAGGTTTGATGCAAAAGAGAATGTCC
ACATCGCAGAACTTTTTGTTGATGAAATCACACCATTCACACCTCACTTT
CATGAAAAGCTTGTTAAAAagGCTTGTAATCGTTATTTCAACCACCTTAA
GAGGACTGAGAAAGAAAAGGACCTGTTAACACCTGAAGAGTTGGAAGCAA
AGACTGTAGCAAACCGTAGATCATCTAGATGCCATAAAaccAGCAAACGT
CTTCAGAAGATAGGCAAAACGATCGAATCACTAGACGAAGAAGAGCAGGA
GATGGTATTGGCAATGACGGGCGAAGTCATGACAGATGAAGAATCTGATG
AAGATGAGAataatgtaaaaataataatgaGGAGAAAATTGAGTTGGAGG
AGCGataaatttgaactttcaatgGAAAAAATCAACTCCAAGACAACTAA
CAAAACTTTAATGTATCGTGTTAATGGCTTGCCGTCCACTCGTCAGCCAT
CTGAAAATACTAACCCTATTTTTGTGagaaatatagaaaatgtaGAGTAG
CATGataattacaaagaaaaattcgAAGAGCAAGATAATTTGATCAAACA
ACAAAAGGAGGCTATACAATTGTTGCAGGACAGAGTAACAGAATTGGAAG
GCGCGATGCAAGCAAGGGCAAGTGGACCTGTGGTTGAACCTATTACACCA
GAACTTGCTGATAAGGTACGCAGTATATTCAAATGTAAAGCCAGTACTGG
AAACGAAGTGTGGAATTTCAATTTAAGGTTTGATGCAAAAGAGAATGTCC
ACATCGCAGAACTTTTTGTTGATGAAATCACACCATTCACACCTCACTTT
CATGAAAAGCTTGTTAAAAagGCTTGTAATCGTTATTTCAACCACCTTAA
GAGGACTGAGAAAGAAAAGGACCTGTTAACACCTGAAGAGTTGGAAGCAA
AGACTGTAGCAAACCGTAGATCATCTAGATGCCATAAAaccAGCAAACGT
CTTCAGAAGATAGGCAAAACGATCGAATCACTAGACGAAGAAGAGCAGGA
GATGGTATTGGCAATGACGGGCGAAGTCATGACAGATGAAGAATCTGATG
AAGATGAGAataatgtaaaaataataatgaGGAGAAAATTGAGTTGGAGG
AGCGataaatttgaactttcaatgGAAAAAATCAACTCCAAGACAACTAA
CAAAACTTTAATGTATCGTGTTAATGGCTTGCCGTCCACTCGTCAGCCAT
CTGAAAATACTAACCCTATTTTTGTGagaaatatagaaaatgtaGAGTAG
CATGataattacaaagaaaaattcgAAGAGCAAGATAATTTGATCAAACA
ACAAAAGGAGGCTATACAATTGTTGCAGGACAGAGTAACAGAATTGGAAG
GCGCGATGCAAGCAAGGGCAAGTGGACCTGTGGTTGAACCTATTACACCA
GAACTTGCTGATAAGGTACGCAGTATATTCAAATGTAAAGCCAGTACTGG
AAACGAAGTGTGGAATTTCAATTTAAGGTTTGATGCAAAAGAGAATGTCC
ACATCGCAGAACTTTTTGTTGATGAAATCACACCATTCACACCTCACTTT
CATGAAAAGCTTGTTAAAAagGCTTGTAATCGTTATTTCAACCACCTTAA
GAGGACTGAGAAAGAAAAGGACCTGTTAACACCTGAAGAGTTGGAAGCAA
AGACTGTAGCAAACCGTAGATCATCTAGATGCCATAAAaccAGCAAACGT
CTTCAGAAGATAGGCAAAACGATCGAATCACTAGACGAAGAAGAGCAGGA
GATGGTATTGGCAATGACGGGCGAAGTCATGACAGATGAAGAATCTGATG
AAGATGAGAataatgtaaaaataataatgaGGAGAAAATTGAGTTGGAGG
AGCGataaatttgaactttcaatgGAAAAAATCAACTCCAAGACAACTAA
CAAAACTTTAATGTATCGTGTTAATGGCTTGCCGTCCACTCGTCAGCCAT
CTGAAAATACTAACCCTATTTTTGTGagaaatatagaaaatgtaGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034033XLOC_034033Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053906-proteinTCONS_00053906-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053906-exon-scaffold_236-1491911889:70490..70648TCONS_00053906-exon-scaffold_236-1491911889:70490..70648Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1510915933:70490..70648TCONS_00053906-exon-scaffold_236-1510915933:70490..70648Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1575043694:70490..70648TCONS_00053906-exon-scaffold_236-1575043694:70490..70648Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1491911889:71382..71449TCONS_00053906-exon-scaffold_236-1491911889:71382..71449Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1510915933:71382..71449TCONS_00053906-exon-scaffold_236-1510915933:71382..71449Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1575043694:71382..71449TCONS_00053906-exon-scaffold_236-1575043694:71382..71449Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1491911889:71672..71763TCONS_00053906-exon-scaffold_236-1491911889:71672..71763Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1510915933:71672..71763TCONS_00053906-exon-scaffold_236-1510915933:71672..71763Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1575043694:71672..71763TCONS_00053906-exon-scaffold_236-1575043694:71672..71763Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1491911889:71967..72085TCONS_00053906-exon-scaffold_236-1491911889:71967..72085Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1510915933:71967..72085TCONS_00053906-exon-scaffold_236-1510915933:71967..72085Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1575043694:71967..72085TCONS_00053906-exon-scaffold_236-1575043694:71967..72085Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1491911889:72261..72582TCONS_00053906-exon-scaffold_236-1491911889:72261..72582Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1510915933:72261..72582TCONS_00053906-exon-scaffold_236-1510915933:72261..72582Clytia hemisphaericaexon
TCONS_00053906-exon-scaffold_236-1575043694:72261..72582TCONS_00053906-exon-scaffold_236-1575043694:72261..72582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_236supercontigscaffold_236:70490..72582 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0643879	0.0627884	0.0729033	0	0.781476	0.274459	1.15893	0.929981	1.3022	0.94091	1.23944	1.28646	0.72798	0.533658	0.658109	0.51007	0.386686	1.73399	0.752904	1.93384	1.30733	1.18425	0.442956	1.40949	0	0	0.441443	0.282672	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028101DUF4616
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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