TCONS_00053916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053916
Unique NameTCONS_00053916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053916 ID=TCONS_00053916|Name=TCONS_00053916|organism=Clytia hemisphaerica|type=transcript|length=369bp
ATCACAGCATTTAGTAGGAGTTTATTACACATCTGGTCAGATTTTTATTT
TGGCCTAACTACACACTATTGTCCATGTACATTAGGAACCTACGGTAATA
GTTTCTGGCTTCAGCCAATTGTTCTTTATACAGTTTCATTCTTTGTGGCT
TCTTAATATCCTTTGCATAGTTTTTGCGCATATTGCGAAGAATTTCTTTC
ACCGGCTGCCAATCGGTGTATTCGTCATATAATGACCAGCAGTCTCGTGG
TTTACAACTTTGCCATTTTTTGGcatttatttcatcattttcaatCATTT
CGTATCCGATGTAAAGGATCTTCAGTATATGGGCTCTTTGCCATTTGGTG
GCCTTGTACCAATCGTTTT
Run BLAST on NCBI

protein sequence of TCONS_00053916-protein

>TCONS_00053916-protein ID=TCONS_00053916-protein|Name=TCONS_00053916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
NDWYKATKWQRAHILKILYIGYEMIENDEINAKKWQSCKPRDCWSLYDEY
TDWQPVKEILRNMRKNYAKDIKKPQRMKLYKEQLAEARNYYRRFLMYMDN
SV
Run BLAST on NCBI

transcript from alignment at scaffold_236:84509..84877

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053916 ID=TCONS_00053916|Name=TCONS_00053916|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at scaffold_236:84509..84877 (Clytia hemisphaerica)
AAAACGATTGGTACAAGGCCACCAAATGGCAAAGAGCCCATATACTGAAG
ATCCTTTACATCGGATACGAAATGattgaaaatgatgaaataaatgCCAA
AAAATGGCAAAGTTGTAAACCACGAGACTGCTGGTCATTATATGACGAAT
ACACCGATTGGCAGCCGGTGAAAGAAATTCTTCGCAATATGCGCAAAAAC
TATGCAAAGGATATTAAGAAGCCACAAAGAATGAAACTGTATAAAGAACA
ATTGGCTGAAGCCAGAAACTATTACCGTAGGTTCCTAATGTACATGGACA
ATAGTGTGTAGTTAGGCCAAAATAAAAATCTGACCAGATGTGTAATAAAC
TCCTACTAAATGCTGTGAT

Coding sequence (CDS) from alignment at scaffold_236:84509..84877

>TCONS_00053916 ID=TCONS_00053916|Name=TCONS_00053916|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_236:84509..84877 (Clytia hemisphaerica)
AACGATTGGTACAAGGCCACCAAATGGCAAAGAGCCCATATACTGAAGAT
CCTTTACATCGGATACGAAATGattgaaaatgatgaaataaatgCCAAAA
AATGGCAAAGTTGTAAACCACGAGACTGCTGGTCATTATATGACGAATAC
ACCGATTGGCAGCCGGTGAAAGAAATTCTTCGCAATATGCGCAAAAACTA
TGCAAAGGATATTAAGAAGCCACAAAGAATGAAACTGTATAAAGAACAAT
TGGCTGAAGCCAGAAACTATTACCGTAGGTTCCTAATGTACATGGACAAT
AGTGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034042XLOC_034042Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053916-proteinTCONS_00053916-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053916-exon-scaffold_236-1491911889:84509..84877TCONS_00053916-exon-scaffold_236-1491911889:84509..84877Clytia hemisphaericaexon
TCONS_00053916-exon-scaffold_236-1510915933:84509..84877TCONS_00053916-exon-scaffold_236-1510915933:84509..84877Clytia hemisphaericaexon
TCONS_00053916-exon-scaffold_236-1575043694:84509..84877TCONS_00053916-exon-scaffold_236-1575043694:84509..84877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_236supercontigscaffold_236:84509..84877 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.266885	0	0.231447	0	0	0.294939	0.459446	0.125909	0.13512	0	0.472543	0	0	0	0.313711	0	0.231139	0	0.42494	0	0.324484	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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