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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053934 ID=TCONS_00053934|Name=TCONS_00053934|organism=Clytia hemisphaerica|type=transcript|length=3551bpRun BLAST on NCBI protein sequence of TCONS_00053934-protein >TCONS_00053934-protein ID=TCONS_00053934-protein|Name=TCONS_00053934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp MSRKRTPVRSTGPVKGMSGSATKSIKPAWSKMLEPQDTNDLKFNNKSSFARun BLAST on NCBI transcript from alignment at scaffold_237:316747..340092+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053934 ID=TCONS_00053934|Name=TCONS_00053934|organism=Clytia hemisphaerica|type=transcript|length=23346bp|location=Sequence derived from alignment at scaffold_237:316747..340092+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_237:316747..340092+ >TCONS_00053934 ID=TCONS_00053934|Name=TCONS_00053934|organism=Clytia hemisphaerica|type=CDS|length=18210bp|location=Sequence derived from alignment at scaffold_237:316747..340092+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053934 vs. Swiss-Prot (Human)
Match: EMAL6 (Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens GN=EML6 PE=2 SV=2) HSP 1 Score: 426.402 bits (1095), Expect = 2.954e-125 Identity = 209/415 (50.36%), Postives = 287/415 (69.16%), Query Frame = 3
Query: 1824 DVVYTGAASGEIYVWQGSTYRKSIPAHKGPVYAMFALLQSEEKGFVTGGNDGVVMVWDQSFMAPLRAFKVESSRFPSGT--ILLHDCPPIRSIHTDEGNILVGTGHNDVIQIHYNGSMEMIIQGHGEGELWGLALHPDALECATVSDDKTLRIWNI-VEHRLKKVAVLKRGGRCVAYSPDGASIAVGLNDGSFMIVDAKTLKTSVLTKDRTEEISDIKFSPD-GTYLGVASHDNMLDIYNVKRGKKRAVCRGNSSYLTHFDWDTKSRLIQTNSGAREHLLFEVPAGTRKTMGTDAVIRTDWSSFSAVIGPTVKGIYPPSSDVTDVNASNRTSDYELIATGDDFGQVKLFRYPVLVRGAKFRSYKGHCSHVTNVRWSCDDKYLLSVGGMDATLLLWERVPAGQ------DFQEDDT 3038
D+V++GAA+G+I++W+ K++ AH GPV+AM+AL +KGFVTGG DG+V +WD F L+ + ++ S + + +LL D P IR+I G+ILVGT + ++++I +G M +++QGH EGE+WGLA HP CATVSDDKTLRIW + +HR+ V LK+GGRC A+SPDG ++AVGLNDGSF++V+A T++ V R E ISDIKFS D G YL VASHDN +DIYNV K+ +C+G SSY+TH DWD++ +L+Q NSGARE L FE P G R + + + +W +++ V+GPT +GI+P SD+TDVNA++ T D L+ATGDDFG VKLF YPV + A+F+ Y GH +HVTNVRW +D LL+VGG D L++W R G D +E DT
Sbjct: 876 DLVFSGAATGDIFIWKDILLLKTVKAHDGPVFAMYAL----DKGFVTGGKDGIVELWDDMFERCLKTYAIKRSALSTSSKGLLLEDNPSIRAITLGHGHILVGTKNGEILEIDKSGPMTLLVQGHMEGEVWGLAAHPLLPICATVSDDKTLRIWELSAQHRMLAVRKLKKGGRCCAFSPDGKALAVGLNDGSFLVVNADTVEDMVSFHHRKEMISDIKFSKDTGKYLAVASHDNFVDIYNVLTSKRVGICKGASSYITHIDWDSRGKLLQVNSGAREQLFFEAPRGKRHIIRPSEIEKIEWDTWTCVLGPTCEGIWPAHSDITDVNAASLTKDCSLLATGDDFGFVKLFSYPVKGQHARFKKYVGHSAHVTNVRWLHNDSVLLTVGGADTALMIWTREFVGTQESKLVDSEESDT 1286 HSP 2 Score: 314.309 bits (804), Expect = 9.716e-88 Identity = 162/409 (39.61%), Postives = 248/409 (60.64%), Query Frame = 3
Query: 1806 LCLA--RXDVVYTGAASGEIYVWQGSTYRKSIP-AHKGPVYAMFALLQSEEKGFVTGGNDGVVMVWDQSFMAPLRAFKVESSRFPSGTILLHDCPPIRSIHTDEGNILVGTGHNDVIQI--HYNGSMEMIIQGHGEGELWGLALHPDALECATVSDDKTLRIWNIVEHRLKKVAVLKRGGRCVAYSPDGASIAVGLNDGSFMIVDAKTLKTSVLTKDRTEEISDIKFSPDGTYLGVASHDNMLDIYNV-KRGKKRAVCRGNSSYLTHFDWDTKSRLIQTNSGAREHLLFEVPAGTRKTMGTDAVIRTDWSSFSAVIGPTVKGIYPPSSDVTDVNASNRTSDYELIATGDDFGQVKLFRYPVLVRGAKFRSYKGHCSHVTNVRWSCDDKYLLSVGGMDATLLLWERVPAG 3014
LCLA + D+ Y+GA +G+IYVW+G ++I AH +++M+A E+GF TGG DG + +WD F + E+ + G IRS+ +L GT +++ ++ +I+QGH EGELW LALHP T SDD+++R+W++ +H L ++ R VA+SPDG+ +A+G+ DGSF+++ + + V KDR E I ++KFSPDG+YL V S+D +D+Y V +R KK C + S++TH DW S+ +QTN GA E L + +P+G + + + W+S++ V GP V GI+P ++VTD+N+ + + ++ +GDDFG VKLF++P L RGAKFR Y GH +HVTNVRWS D +++LS GG D ++ W +P G
Sbjct: 201 LCLACAKEDITYSGALNGDIYVWKGLNLVRTIQGAHSAGIFSMYAC----EEGFATGGRDGCIRLWDTDFKPITKIDLRETEQGYKGL-------SIRSVCWKADRLLAGTQDSEIFEVIVRERDKPMLILQGHCEGELWALALHPKKPLAVTGSDDRSVRLWSLADHALIARCNMEEAVRSVAFSPDGSQLALGMKDGSFIVLRVRDMTEVVHIKDRKEVIHEMKFSPDGSYLAVGSNDGPVDVYAVAQRYKKIGECSKSLSFITHIDWSLDSKYLQTNDGAGERLFYRMPSG-KPLTSKEEIKGIPWASWTCVKGPEVSGIWPKYTEVTDINSVDANYNSSVLVSGDDFGLVKLFKFPCLKRGAKFRKYVGHSAHVTNVRWSHDFQWVLSTGGADHSVFQWRFIPEG 597 HSP 3 Score: 270.011 bits (689), Expect = 1.018e-73 Identity = 125/283 (44.17%), Postives = 185/283 (65.37%), Query Frame = 1
Query: 1147 KSARRPAEGLQLKFAFGYHGYNACNNVFYTQSNEIVFHTAAIGIVYNQETHEQRFYLGHDDDILCLTVHDEEDFIATGQIGRNPCTQVWDIVSLKCVAVLKGFHKRGIICVDFSGDGDKLADVGLDDDHCICIWNWRKEEKLASTRGHKDVIYNLEWNPYDVNKLVSVGVKHIKFWTLNGNKIEKRTTTFGKAGELTDMLCICHSPLEDVVYTGAASGEIYVWQ------------GKMSCTQELRQEKFMSGKAVLIGSRFQLTKDLFMQCLLCFNQKKRVL 1959
K + P + L+L+F GY GY+ NN+FYTQ+ E+V+H AA+ +VYN++ H QR YLGHDDDIL LT+H +D++ATGQ+GR+ VWD +LKC+++LKG H+RG+ +DFS DG L VGLDD H I W+W+K EK+A+TRGHKD I+ ++ NP+ V+KLV+VG+KHIKFW G + TFG G+L M+C+ + +ED+V++GAA+G+I++W+ G + L + GK ++ +L D+F +CL + K+ L
Sbjct: 668 KREKAPEDSLKLQFIHGYRGYDCRNNLFYTQAGEVVYHIAAVAVVYNRQQHSQRLYLGHDDDILSLTIHPVKDYVATGQVGRDAAIHVWDTQTLKCLSLLKGQHQRGVCALDFSADGKCLVSVGLDDFHSIVFWDWKKGEKIATTRGHKDKIFVVKCNPHHVDKLVTVGIKHIKFWQQAGGGFTSKRGTFGSVGKLETMMCVSYGRMEDLVFSGAATGDIFIWKDILLLKTVKAHDGPVFAMYALDKGFVTGGKDGIV----ELWDDMFERCLKTYAIKRSAL 946 HSP 4 Score: 263.462 bits (672), Expect = 1.103e-71 Identity = 147/402 (36.57%), Postives = 231/402 (57.46%), Query Frame = 3
Query: 1824 DVVYTGAASGEIYVWQGS-TYRKSIPAHKGPVYAMFALLQSEEKGFVTGGND------GVVMVWDQSFMAPLRAFKVESSRFPSGTILLHDCPPIRSIHTDEGNILVGTGHNDVIQI-HYNGSMEMIIQGHGEGELWGLALHPDALECATVSDDKTLRIWNIVEHRLKKVAVLKRGGRCVAYSPDGASIAVGLNDGSFMIVDAKTLKTSVLTKDRTEEISDIKFSPDGTYLGVASHDNMLDIYNVKRG---KKRAVCRGNSSYLTHFDWDTKSRLIQTNSGAREHLLFEVPAGTRKTMGTDAVIRTDWSSFSAVIGPTVKGIYPPSSDVTDVNASNRTSDYELIATGDDFGQVKLFRYPVLVRGAKFRSYKGHCSHVTNVRWSCDDKYLLSVGGMDATLLLW 2996
++ +TGA +G++YVW+ R AH GPV+ M+ L+ + VTGG + G V +WDQ M RAF++E+ + L +C +RS+ +G ILVGT ++I++ N + ++I GH EGE+WGLA HP + S+D T RIW++ + +L L RC AYSPDG +A+G+ +G F+I+ +LK +DR I DI+ SPD +L V S ++ +D Y++ +G + C+ S++ D+ + IQ ++GA + + EVP G + T + + W+S+++V+G V GI+P ++D DVN + T I TGDDFG VKLF +P + AK + Y GH +HVTN+R+S DDKY++S GG D ++ +W
Sbjct: 1567 NLTFTGAINGDVYVWKDHFLIRLVAKAHTGPVFTMYTTLR--DGLIVTGGKERPTKEGGAVKLWDQE-MKRCRAFQLETGQ-------LVEC--VRSVCRGKGKILVGTKDGEIIEVGEKNAASNILIDGHMEGEIWGLATHPSKDLFISASNDGTARIWDLADKKLLNKVSLGHAARCAAYSPDGEMVAIGMKNGEFVILLVNSLKVWGKKRDRKSAIQDIRISPDNRFLAVGSSEHTVDFYDLTQGTNLNRIGYCKDIPSFVIQMDFSADGKYIQVSTGAYKRQVHEVPLGKQVTEAV-VIEKITWASWTSVLGDEVIGIWPRNADKADVNCACVTHAGLNIVTGDDFGLVKLFDFPCTEKFAKHKRYFGHSAHVTNIRFSYDDKYVVSTGGDDCSVFVW 1955 HSP 5 Score: 233.032 bits (593), Expect = 4.955e-62 Identity = 100/220 (45.45%), Postives = 151/220 (68.64%), Query Frame = 1
Query: 1162 PAEGLQLKFAFGYHGYNACNNVFYTQSNEIVFHTAAIGIVYNQETHEQRFYLGHDDDILCLTVHDEEDFIATGQIGRNPCTQVWDIVSLKCVAVLKGFHKRGIICVDFSGDGDKLADVGLDDDHCICIWNWRKEEKLASTRGHKDVIYNLEWNPYDVNKLVSVGVKHIKFWTLNGNKIEKRTTTFGKAGELTDMLCICHSPLEDVVYTGAASGEIYVWQG 1821
P L+L++ +GY G+ NN++YT E+V+ A +G+VYN H Q+F+LGH+DDI+ L +H ++ +ATGQ+G+ P +WD +++ V++LK H G+ C+ F DG +LA VGLD + +CIW+WRK + LAS GH D I+++ W+PY N++VS GVKHIKFWTL GN + + FGK G+L +LC+ + ED+ Y+GA +G+IYVW+G
Sbjct: 7 PRCQLRLEWVYGYRGHQCRNNLYYTAGKEVVYFVAGVGVVYNTREHSQKFFLGHNDDIISLALHPDKTLVATGQVGKEPYICIWDSYNVQTVSLLKDVHTHGVACLAFDSDGQRLASVGLDAKNTVCIWDWRKGKLLASATGHSDRIFDISWDPYQPNRVVSCGVKHIKFWTLCGNALTAKRGIFGKTGDLQTILCLACAK-EDITYSGALNGDIYVWKG 225 HSP 6 Score: 178.718 bits (452), Expect = 3.997e-45 Identity = 99/264 (37.50%), Postives = 146/264 (55.30%), Query Frame = 1
Query: 1075 GAKPE---GAVSPRRMDVVEQALANPEK-------SARRPAEGLQLKFAFGYHGYNACNNVFYTQSN-EIVFHTAAIGIVYNQETHEQRFYLGHDDDILCLTVHDEEDF---IATGQIGRNPCTQVWDIVSLKCVAVLKGFHKRGIICVDFSGDGDKLADVGLDDDHCICIWNWRKEEKLASTRGHKDVIYNLEWNPYDVNKLVSVGVKHIKFWTLNGNKIEKRTTTFGKAG--ELTDMLCICHSPLEDVVYTGAASGEIYVWQ 1818
G KP VS V +A PEK ++ E L L FGY G++ NN+ Y +I+FHTAA GIV N T Q FYL H DDILCLTV+ + +AT QIG P +WD ++ +++L+ FH +G+ ++FS G L VG+D +H I +W W++ K+AS GH + I+ +E+ P + VSVGVKH+KFWTL G+ + + G G ++ ML + ++ +TGA +G++YVW+
Sbjct: 1320 GTKPHQQLKEVSVEERPPVSRAAPQPEKLQKNNITKKKKLVEELALDHVFGYRGFDCRNNLHYLNDGADIIFHTAAAGIVQNLSTGSQSFYLEHTDDILCLTVNQHPKYRNVVATSQIGTTPSIHIWDAMTKHTLSMLRCFHSKGVNYINFSATGKLLVSVGVDPEHTITVWRWQEGAKVASRGGHLERIFVVEFRPDSDTQFVSVGVKHMKFWTLAGSALLYKKGVIGSLGAAKMQTMLSVAFGA-NNLTFTGAINGDVYVWK 1582 The following BLAST results are available for this feature:
BLAST of TCONS_00053934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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