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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053940 ID=TCONS_00053940|Name=TCONS_00053940|organism=Clytia hemisphaerica|type=transcript|length=1814bp
gccttttttcgatttttttgaaaagtaatgttttgaagtttagaccataa
cttttgatctagttgaccaaatttgacaaaataatgacccctcaaaattc
aaTTCTATCCACcttctttccaatgcaaaaaaaaactgattCTTTCACAA
TCACAGAAATCAAGAAAGTTCACTTCAAAGAGagggacttttttctggga
cacccagTAGCAATCACTATATTCACCGTAAGAACCATAGCGAGTTCAAG
TGTGGCAGAACTAAAAGCTGACAAAGAGCAATTTTACTTAACAGATTTTG
TTGTAGCAACATGAAGTCTGTTTATTAGGGCAGCAAACAACATTAAACAG
TTTAACATAACAACCATTTGATATTTATTGGTTCGAGTTGTTGTGTTGAC
ACGAGATGTTATCCGAGCAGGTTCCACAGATGAAGCTTAATAAACTAAAT
GATGTCTTATCGATTGCTTGTTTCGTTTGGTGGAAGGTTTCCCCATTCAA
ACactaaaacataaataaaaagaaaaccaaCAACAAAATGCTACAAATAC
AAAATAGAAAGCCTTTCTAAGTATGAAGGAGATCAGAGGTTAAGAGGGGA
TTTCTGTCCATAAAGTAAGATGACATTAAACGTATAATATGAAGTGAGAT
AAAGGGTGGGACTAATCGATAAGTTTGAAGATTATCAAAACACATAATTA
GTCTCATATCTCAAACCTCATAAACATTCTAAACCTTCAAAGGCATCGAT
TAGTTGGAATGGTCAAAGAATTCACCATCAATAACTTTCTAAACAACCAC
ATAAATAGTCAAACATTCTCCATCCTCTTTCCTTGTAACTATTATTGACA
ATGAAAACCAAGACCAAATGGTACCACAAAAGGAAATGATCAACATCAAA
TATACTCCAGGGACAGAAATTATCACAAGACTAAAAATTTTCAGGGAAAC
TGTAAAAAAAGGGGCAAAGGGTAAATTCAGTGAAACAAAGCAAAAGTAAC
TTGCCGATTGATTCTTGTGCATGCAATAAAGCTCCACATCATTTGATCCA
CATCGCGAcactaaaaaataaagaagaaaaagcaaACCAGCACAGCAATT
GCAAGGTGGAAATATGTGAGGGTTTGATGGTGAGAAGAAATATGCCCTCA
GAGTAAGTTTAGATGTACCCTTAACGAAGGTGGGTGGGACTAATCAATAA
GTTTGAAGATTATCAAAACACATAATTAGTCTCAAACCTTAAACCTCATA
AACAGTCTGAACCTTCAAAAGCATTGATTAGTTGGAATGGTCAAAGAATT
CACCATCAATAACTTTCTAAACAACCACATAAATAGTTGAACTTTCTCCA
TCCTCTTTCCTTGTAACTATTATTGACAATGAAAACCAAGACCAAATGGT
AGCACAAAAGGAAATGATCAACATTAAACATACTCCAAGGGCATGCACTG
AGTAAAAGCTATAAAACACTCCAGGGTCAAAAATGGTTGCAAATTATTTA
AGTTAGACACAGAGGGTACGATTAATAAAGAAATGATCAAAATTAAACTT
GCCAAGTAAATCTGGTGTTTGTTGTAGTAGTAGTTCCATGACAAACTTGA
CCAAGTCTGAATCATCACACCTATTGTCGATTGGAATAAACAGAGTTAGA
TAAAAATTGGTAAAGTTGTCAAAAGggaggaaaaaataatgcttaacCAT
ATCCACAATACTgaagtaaaattgaaatttttctagctTGTCCATCCATC
ACAACATTCTTCTCCAATCTTAATACCAGCGAAGATAACAATATGTCCAA
ATTATTCGCCAACC Run BLAST on NCBI transcript from alignment at scaffold_237:457079..459418+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053940 ID=TCONS_00053940|Name=TCONS_00053940|organism=Clytia hemisphaerica|type=transcript|length=2340bp|location=Sequence derived from alignment at scaffold_237:457079..459418+ (Clytia hemisphaerica)
gccttttttcgatttttttgaaaagtaatgttttgaagtttagaccataa
cttttgatctagttgaccaaatttgacaaaataatgacccctcaaaattc
aaTTCTATCCACcttctttccaatgcaaaaaaaaactgattCTTTCACAA
TCACAGAAATCAAGAAAGTTCACTTCAAAGAGagggacttttttctggga
cacccagTAGCAATCACTATATTCACCGTAAGAACCATAGCGAGTTCAAG
TGTGGCAGAACTAAAAGCTGACAAAGAGCAATTTTACTTAACAGATTTTG
TTGTAGCAACATGAAGTCTGTTTATTAGGGCAGCAAACAACATTAAACAG
TTTAACATAACAACCATTTGATATTTATTGGTTCGAGTTGTTGTGTTGAC
ACGAGATGTTATCCGAGCAGGTTCCACAGATGAAGCTTAATAAACTAAAT
GATGTCTTATCGATTGCTTGTTTCGTTTGGTGGAAGGTTTCCCCATTCAA
ACactaaaacataaataaaaagaaaaccaaCAACAAAATGCTACAAATAC
AAAATAGAAAGCCTTTCTAAGTATGAAGGAGATCAGAGGTTAAGAGGGGA
TTTCTGTCCATAAAGTAAGATGACATTAAACGTATAATATGAAGTGAGAT
AAAGGGTGGGACTAATCGATAAGTTTGAAGATTATCAAAACACATAATTA
GTCTCATATCTCAAACCTCATAAACATTCTAAACCTTCAAAGGCATCGAT
TAGTTGGAATGGTCAAAGAATTCACCATCAATAACTTTCTAAACAACCAC
ATAAATAGTCAAACATTCTCCATCCTCTTTCCTTGTAACTATTATTGACA
ATGAAAACCAAGACCAAATGGTACCACAAAAGGAAATGATCAACATCAAA
TATACTCCAGGGACAGAAATTATCACAAGACTAAAAATTTTCAGGGAAAC
TGTAAAAAAAGGGCAAAGGGTAAATTCAGTGAAACAAATCCAAAGTAACT
TGCCGATTGATTCTTGTGCATACAATAAAGCTCCACATCATTTGATCCAC
ATCGGGAcactaaaaaataaagaaaaaaaagcaaaccAGCAAAGCAATTG
CAAGGTGGAAATATGTGAGGGTTTGATGGTGAGAAGAAATATGCCCTCAG
AGTAAGTTTAGATGTACCCTTAACGAAGGTGGGTGGGACTAATCAATAAG
TTTGAAGATTATCAAAACACATAATTAGTCTCAAACCTTAAACCTCATAA
ACAGTCTAAACCTTCAAAAGCATTGATTAGTAGGAATGGTCAAAGAATTC
ACCATCAATAACTTTCTAAACAACCACATAAATAGTCGAACTTTCTCCAT
CCTCTTTCCTTGTAACTATTATTGACAATGAAAACCAAGACCAAATGGTA
CCACAAAAGGAAATGATCAACATCAAATATACTCCAGGGACAGAAATTAT
CACAAGACTAAAAATTTTCAGGGCCACTGTAAAAAAAGGGCAAAGGGTAA
ATTCAGTGAAACAAAGCAAAAGTAACTTGCCGATTGATTCTTGTGCATGC
AATAAAGCTCCACATCATTTGATCCACATCGCGAcactaaaaaataaaga
agaaaaagcaaACCAGCACAGCAATTGCAAGGTGGAAATATGTGAGGGTT
TGATGGTGAGAAGAAATATGCCCTCAGAGTAAGTTTAGATGTACCCTTAA
CGAAGGTGGGTGGGACTAATCAATAAGTTTGAAGATTATCAAAACACATA
ATTAGTCTCAAACCTTAAACCTCATAAACAGTCTGAACCTTCAAAAGCAT
TGATTAGTTGGAATGGTCAAAGAATTCACCATCAATAACTTTCTAAACAA
CCACATAAATAGTTGAACTTTCTCCATCCTCTTTCCTTGTAACTATTATT
GACAATGAAAACCAAGACCAAATGGTAGCACAAAAGGAAATGATCAACAT
TAAACATACTCCAAGGGCATGCACTGAGTAAAAGCTATAAAACACTCCAG
GGTCAAAAATGGTTGCAAATTATTTAAGTTAGACACAGAGGGTACGATTA
ATAAAGAAATGATCAAAATTAAACTTGCCAAGTAAATCTGGTGTTTGTTG
TAGTAGTAGTTCCATGACAAACTTGACCAAGTCTGAATCATCACACCTAT
TGTCGATTGGAATAAACAGAGTTAGATAAAAATTGGTAAAGTTGTCAAAA
GggaggaaaaaataatgcttaacCATATCCACAATACTgaagtaaaattg
aaatttttctagctTGTCCATCCATCACAACATTCTTCTCCAATCTTAAT
ACCAGCGAAGATAACAATATGTCCAAATTATTCGCCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053940-exon-scaffold_237-1491911889:457079..458040 | TCONS_00053940-exon-scaffold_237-1491911889:457079..458040 | Clytia hemisphaerica | exon |
| TCONS_00053940-exon-scaffold_237-1510915933:457079..458040 | TCONS_00053940-exon-scaffold_237-1510915933:457079..458040 | Clytia hemisphaerica | exon |
| TCONS_00053940-exon-scaffold_237-1575043694:457079..458040 | TCONS_00053940-exon-scaffold_237-1575043694:457079..458040 | Clytia hemisphaerica | exon |
| TCONS_00053940-exon-scaffold_237-1491911889:458567..459418 | TCONS_00053940-exon-scaffold_237-1491911889:458567..459418 | Clytia hemisphaerica | exon |
| TCONS_00053940-exon-scaffold_237-1510915933:458567..459418 | TCONS_00053940-exon-scaffold_237-1510915933:458567..459418 | Clytia hemisphaerica | exon |
| TCONS_00053940-exon-scaffold_237-1575043694:458567..459418 | TCONS_00053940-exon-scaffold_237-1575043694:458567..459418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:457079..459418 + |
Blast
The following BLAST results are available for this feature:
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