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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053941 ID=TCONS_00053941|Name=TCONS_00053941|organism=Clytia hemisphaerica|type=transcript|length=232bp
CTTTTGTATGTACTAATCGAGTCAACCCTTTCCCGCTCTCCTTTAAAAAA
TCATGCCTTTCCACGCCGTCGATCTTTCGACTTTTACTCAAACAGTCAAA
CTATTTTACTCCCAAATTCAGCAGCGTCATTATTTGTGAAGCATCATTTT
ACAACAGGACTATTACAGATTCACAAAGACTGTTATTACAAAGACTCTGC
AATTGGGAATTATTGCCATTATTAAAAAACGT Run BLAST on NCBI transcript from alignment at scaffold_237:461799..471029+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053941 ID=TCONS_00053941|Name=TCONS_00053941|organism=Clytia hemisphaerica|type=transcript|length=9231bp|location=Sequence derived from alignment at scaffold_237:461799..471029+ (Clytia hemisphaerica)
CTTTTGTATGTACTAATCGAGTCAACCCTTTCCCGCTCTCCTTTAAAAAA
TCATGCCTTTCCACGCCGTCGATCTTTCGACTTTTACTCAAACAGTCAAA
CTATTTTACTCCCAAATTCAGCAGCGTCATTATTTGTGAAGCATCATTTT
ACAACAGGACTATTACAGGTATTTCTATCTTCGATCCCTTATTTTATCAA
CAGTTATACTTGTGAAGTATCTAAGGTATACATTTTTCATGATGACAGAG
TAGTGGGGAGTAGTGGGTTAATTTCTCAAACCAAAACATAGTAAGTTATT
GAAAGTTCGAAGGTTTATAAGGGGCTCTCTCCTTATAAGCTGACAGCAAT
AATTGTTTTCTAGccccttcaaaaatttttcattcaaggATTTCATCCCA
GATTACCAGCAGATAAATTGTTAGGGCGATTTGCACTAGCTAAATCTGTA
CcttcccgtccgaaatcattagAAGAGAAGTAAGAGAAGAGAAGTAAAAA
CGACATTCATCCACTGTACAGTATTCCCAATGTATGCAGCATTATCGATG
AACGTCGTCTGAACTTACTCAGGCAGTTAGTGCTTAATGAATCTACCAAG
AGTTATATCTGCTTTTTACTGTCTACTCATACGAACGTAGAATTCAGCTT
TCTCGACAAATGTCAAAGAATAATCGATCTTAACGACATATCTTTCATAG
AAACACTATTTGGCAAAAGACACCGTattattcaatgttttgatcaaCTG
CCCTCAGATATCTTTGATAAGTACAATGATTATATTCAAAACTGGCATGT
TTATGATAATCGGGTTGCTTTCAAAGCAATGTTAGAAGAACACGTCATCA
GAGCGAGAACAGGGATCTGACCTCTGTCTCTTTANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTCTATTTAACGTagtcttgttttttattttcttctttttaacctgt
acatatttttgtttatataccATTCTactggtgataaaagagattcatat
atatatatatatttttgcaTATATCTCATTAAGGTTAAGTGttaatgatt
ttttcttttttcatcagaTACCGCTTGGTAATGGTAcactttctgcaaaa
tttcatgtatTAACTGTCCATAATTAGTCTGCAATCATAAATTTTGTGtc
aatttttcctcgttttggcaatttttagcaaaaaagtgctTCAGTTTTAT
GGTAGCACTTTCTTTTCAGGAAGGTATTTGACCTGGAATTTTGATTTTCC
ATATAGGTAATTTATTCAtgtgtttttctacaaaaaaagtgttttgagAC
CTTTTTTCCATCTTGCTCTAGCAATGATTTTCTGTTTACGTCCATTTTGA
CACCAAAaaatgtcccgtccgaaatcacaATAAGATTGACAACATTTCTG
AAATTGTGCAGGGAAAGATTTGAATGGCTGAATATTGTAATCTAGGCTAG
AGCATATTTTAATTGAGTAAATCTAAGATTCAAAGCTCTTCAGATTTGAT
TCCAGGGGTACTAGAAGAAATTGTCCCGTCTGAAATCATTTGTCCTGTCC
GAAATCAtaacttttcaatttcaatttgtaATAAAATGAATGTTTAACAT
TCAGGAAGTTATTAGCAAGACATGgtaagaaaaatgttcaaacAGGCCAA
TTGAAGTAAGTTTTTATACCTTTATTTTAACCTTGAAAATAGGAATTGAT
TTCGGAAGGGACAATTTTCCTGTAAAAATAGGTATTGTATTAAAACCACT
ACTGGAACAAAAAGAGTGGAAGATTCTCAAGTATTTTCTATTTGAAATAG
TAGTATATTTACTTGTATATTTACTGATAATNNTTGaaataaaacagatt
tttatgaaaatgatttcggacgggacaggAAAAATTTAGTGCAAATCACc
ctgaaaaaagatgaaaaaggtgatacagatttttaaaatttattctaaTT
TGAGGAAGGCCTTTATACAAACAATTTCAGGCTGTTCTTCAGCTTCCTTA
CTTCATCAAtacatttttctgatgtattctAGCCTTtagttttgcaaatt
ttgtctGTCCGAAATCATTTTTGATATCTACATGCCAATCAAAAGAATGT
AACAAAAATAGGATTTCACCTAAGTTTAGTGATACTTAAATATCACCTGT
TACAACCCTTATAATATATGATACTCTCTACAGTGCAagttagttttgtt
tttttttaccacaaatttataattttcataCGCTCTAACAGCTCCATGAG
cccctatatctttattattagGCCTTGAAAGGTGGTGTCAAGGTTCATTT
CCATAAAATATAGGCTATAGACTGTCATAGAAAAGTACagttatgtttaa
aaaattaactttatttttcatgatttcggACCTTCGGACTGGACACGGTA
CAGATTTAGCGCAAATCGCCCGTTAATTGAAATTACCAGGCAGGTCATGC
ACAAGCAGGTGATAACTCTGTAAATATCCCTGTAtaagtaatttttttca
tttttgggaaGAGCTTCAACATCAATAGCATGATGGTGGTAGGTGACCAA
TTTTTTGGGGGGTTAGAAAGGACAAATACTGCAAAAAGGTGTATCTGATT
TACTTTTCAATGCTATATACAGACAAGTTTGCAGGCCACCATCAAGTTTT
TCCACCTGACTTTAAATAccatgagtggtcctaaatccgacaactctgcc
taaatctgatgggcagttacatcaatatgccttcttacctgtcaaaaata
tcaatagaagtaatcacggaaaaggacgcgcaaaaaaaagacataagtgt
gagaacagagtaatcaaactcgttagaaaaagtaccattagaagtcataa
aaaatctaaaaatcgacctgaataaatgcaatcaagattccagagaactt
cataattccccaaaaaacatttacattactatgtcaaactcccatcacat
aaattttacaattacttcagagtagactacgctcgccaccgaagaggttt
atttggaaagggtaattatattttattgttcgcttcttttttaaagattc
gccgggttggaaaagtataaatttctttgtacatattttacctaccccaa
atatttaggaggctgagttttaaacgaatcttCAAGTTGAAACGatcgat
aaatgtatcaaggtctgttttattcacccctggtgacttaacaaaagaga
cttaactcgatgttacaatccaattattgaaagtttgtgtcGGCCTTTAA
TGAGCAAGACATActttctctgattacgcaattttcatattgacattttc
gaggcatttggATGTAACTGATGGGgttacaaactaaaataaaaacaaac
cttttgctgtgacgTGACAAAGATACCAAAGTTAGCCCTtccgggtttgc
ttgttttttatttgacgctcatgaaaatcttcaattttaggtccaacttt
gacaagcaattgttctttgtgtagttgagctataaaTTAATTAgtttgag
taatttagagctttcttttagctAACCATATaggtgtaatattctacact
tttatttgaaaattcgttccaactaaggccatttttagaaaaattagatc
tacgggacacaaaaaattcacaactcatctttgatttcaaacagCTCCGG
AGGAAAAAATGCTCGGACAGTGAATctttccatatttatcagaaaatacc
tgagaaatccaatggtgctactctctgaaattaattctttcattaggcag
caatcacaaatatcttcatttcgcgtcctcgttggatctaaaaagtgagt
cggtcggtagtaaaaatttttccggttttcttaaaattggtctGTGAGGC
GGAAAAAGGTAAAAGGAGGCGGCAGGAGGCCCAATCGCTTGTATGTTTTG
CGTGGTATTTCAGATTTTTAAGCTTTAAAGCACTGTGACCTTTGACACAT
AATGGCACaagtaatgataaacaaagttaaaatgttgcgaatgcgctaga
aatcgctcacaaaaattggcaataataaaatttttgagcaaaggaaacgt
catcaaaacaaaaagtccgAAGAATTTACTGACTCTCCGActcaatttta
ctcaattttcaggagtcggtcgggcgacgcgaaatgaagatatttgtgat
tgccgccttaaagttattattttttacttttcatactttggcaagcattt
tcagcctgaaaatgaggactagaattataaAGACTGGTACCgctgaaaaa
tttgacccttttttagcctaaaacagttatttatattCCATGGGGAATTT
TCCTCCACAGCCCTTTGATTAAaaagataggtaggttcagaaattttaac
ttccgctttataacgtttttattgttttttgcaatgcaatgtcttctttt
tcaaaaaaatatcttttcatttcttccttgaagtgttagcaagccattac
aaaaagaatttgataaaagtctgcagtcaaaatgaagatatctggatttt
tttttattgtattttgaaattggaaaaccatcaaaaagtgTATATTACGG
TGCCATTTTATAatatgccatttctgggctaaattttcaacctcaaatgt
ctaaaagggtgctattttagcggaaccaaaatctcaatatctcgcttatc
attaggaggtgtatgacccctcatttttttcttttttgaagctctacaag
atgaactaggtttgattgccaccagaatagtttcaatttgaccctgaAAT
GGCTACcgaagtgtcaactaaactgagaaatTTGATTCACTGAACCAATC
CAATTGaacaaataacaataattgcgtCTATAcagaacataattttttat
ttcaaaattgtcCCAAATTTTAACGTTAAACACAAGCAATAGATTCAGAA
TACAAAATAGAGGTAACTATTTTTACAAATCACACCTTTTGATCACATAG
TAAtattgttagatgttttgtttgaAGAGCttttgcaatagtttattgtt
caacttagagtagggtagggcgtcaacagtcatttttggggtaaagtcag
aaaattcaagatgtagtgtttttttatgaaaatttaacctattgtgaggc
attctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNgtactacaggcaaaaattggaaaa
aatggcattttctggccttttcaggcctgtaaatatgtcaaaactattgc
aaatcttatttttttcacttgatgtactaaattttatgaagaaacaacaa
aataatcatattggattgaaaattgtgcccattagagccccaaacgagcc
gttttaagccaatttttggtagcaaaatgctttttaaggccaattttgca
agctcataaactttaaactgatcgATTCACatgcctgaaattttcagaga
tggaagtcttcaataaagtctttaagcaaaatgaatttcaagtttttcac
tgttatcaaaaaatcataatggcgtcttcaaaaattgctttttagcaaaa
aaaaatcaaatttctcaaaaaattgcattttttaaggcaagcttctacaa
actgagtttaaatgctggctgaaattttttttgcagtgatagtacactgg
agatactccagggaaatcaaaatcatttgcatCTGGGATGGGTCTAtgtc
caccattatggaaataaaatccctgctaagagccatttttcaggccaaaa
acccaaatttggactgaaaaaatctctaaaatgtcaatatAGACATGGGT
CCAAATTTTCTTGCAGTGATGGTATTCTGGAAATACTACAGGAAAATCAA
AGTTATCTGGGCTTGGGAtttgggtatatccaccattttggaattgaaat
tcctgctaaaacgcaatatttcaatcaaaaatccaatttttcactcaaaa
aatcttaaaaatggcaatagacatggacctaaaatctttttgcagtgata
gtcttctggaaatactccagggaaattaaaattgtttgggtttaggattt
gggtatatccgccagtttcttcaaaatataagatatccaacatttgtttt
ccttaaaaatcacGGAATTCCAacattcattttccttcaaagtACAAGAC
TTAGACATTGTATCCTTTCTTCACTTCAAAGTAAAGGCAAATATCAGTTT
CCAATCccattttccttttaaaatacaagatatataaCATTGATTTTCCA
TCATAAATACCAGACAAGTGACATTTAtcattcttaaaaatataaGACAC
AAAGAGCTCATTGTTCCCTTTCTCCTCACACAGACCAATGACAGCAAACA
AACTTGAGCTTCAGCTCATGTTGATCAGGAAGGCAAAACTTTTGGGTTTT
TTACGCATGGTAAAATTAGTGTGCTTTTGTTTAGATTAAAACTAGATGGT
TTCGAAGCAAATGCTGAgaagtgaaaattgaaaagaacaTTACAATATCT
TGACTTCTTTTTTGCGAATTTGAGACGccttaaaagaataaaaaacaaac
acttCAGAGCAATCATAGGCATATCGCAACTTGTGGGACTTACAAACACT
TCTCGTGTGAAAGAGCTTCATTTCTATCTACGCTAACATTTAAAACTCAT
TTTTAGTAGCTATTTTTCAGAAAGTGCCATGCCTTCTTAAATTTGAATTC
TTCTACTCAGTGCTTCCATAAGTCACTCCACTCAAAGTGCCTTAGCGATC
TTAATCTTACCAAACAATTGGAGGCAAAAAGACTTATGATTTATATCAAG
GTGAGTgaatatcaatcaaatttttgataacTACCCAATCATATCTCTAC
AAAAACTAAGAATGGTAAGCCTATATGCCTATGAaaaaacatactaaaat
ttcttttcaaaagtccTACCAGAGACTTTGTCAAAACCGAAAATTTGCTA
GCCTCCAGCTAAGGTTTTGGTCTTTTTACCTCCAAAAAATCGATGACATG
ACGTGAAAACAGATGACGTATCATGAAAGCTGTCTATAGAAGATCGATCA
GAGTTCGATTTGCAAAACGTAGAAGACAAAACTATGTTGGGAGCAATCAC
TTAAAGCAAGATTGCCCTTCTGGATAACAGAAGACCTAACAAAAAGTGAA
AGGAAGACAAAGAGTGGTGTATGAAAGCCCAAGAAATTAATAATTCAATA
GAGGACACAAACttcataccgtgagtggtcctaaatctgacaccCCTGCC
AAAATCCTtcccccccaaataactgttatgaaaaaaaattctatgtttac
aaacattctcTCTCTAAGTAGGGTGGGGCGTCAAATGTCAAAGTCAGAAA
ATTCAAGATGTAGtgtttttttatgaaaatttaacctattgtgaggcatt
ctgcgcaatttttaaggtcagaagttcaaaattggccgaacccccctggg
ggtactgattcgtactacaggcaaaaattggaaaaaatggcattttctgg
ccttttcaggcctgtaaatatgtcattactattgcaaatcttattttttt
cacttgatgtactaaattttatgaagaaacaacaaaataatcatattgga
ttgaaatttgtgcccattagagccctaaaggagccgttttaagccaattt
tgggtagcaaaatgctttttaaaggccaattttgcaagttcataaacttt
aaactgattgatTCACATGCctaaaattttcagagatgcAAGTCTTCAAT
Aaggtctttaagcaaaatgaatttcaagttttgcactgttttcaaaaaat
cataatggcgtcttcaaaattcgctttttagcaaaaaaaagtcatatttc
tcaaaaaatagcattttttaaggcaagcttctaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNACATGAAccgaaaatctttttgcagtgatag
tcttctggaaatactccagggaaatcaaaattgtttgggtttaggatttg
ggtatatccgccattatggaatcgGTAACTAATGTCAATGATTTGAAAGC
TTTAAGATGCCTTTATGACACTGTTGAAACTCAGTTACGaaatttagaaa
cttttaaCATGAAAAACGAGGAATATGGGCCACTCTTATTATACAATATA
TATATTCAAAGGTAAGTGACAACACAGAGTAGAAGATTCAGTccattttt
ttagaaacttgCCGTAGTAGTCTAGAACATAAATATACTCAAATTTCTTT
CACTCAGTAACTTCCACCAATTTAGGTCAGTCTAACTGATCCAaattatc
ttttattttttctttcttactcCTCAgtaaattttgcgaatttttaAATT
ACTGTCCACTGAATTATGTCACTATATAGGGAGCAAAGCGAGAGAGGTGT
GAGAGAGGTGCTTACTCTACTGGAATTTAAATGATTATCTTCATTTCTTC
TGATCATGTAACTTTAGATTCACAAAGACTGTTATTACAAAGACTCTGCA
ATTGGGAATTATTGCCATTATTAAAAAACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053941-exon-scaffold_237-1491911889:461799..461966 | TCONS_00053941-exon-scaffold_237-1491911889:461799..461966 | Clytia hemisphaerica | exon |
| TCONS_00053941-exon-scaffold_237-1510915933:461799..461966 | TCONS_00053941-exon-scaffold_237-1510915933:461799..461966 | Clytia hemisphaerica | exon |
| TCONS_00053941-exon-scaffold_237-1575043694:461799..461966 | TCONS_00053941-exon-scaffold_237-1575043694:461799..461966 | Clytia hemisphaerica | exon |
| TCONS_00053941-exon-scaffold_237-1491911889:470966..471029 | TCONS_00053941-exon-scaffold_237-1491911889:470966..471029 | Clytia hemisphaerica | exon |
| TCONS_00053941-exon-scaffold_237-1510915933:470966..471029 | TCONS_00053941-exon-scaffold_237-1510915933:470966..471029 | Clytia hemisphaerica | exon |
| TCONS_00053941-exon-scaffold_237-1575043694:470966..471029 | TCONS_00053941-exon-scaffold_237-1575043694:470966..471029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:461799..471029 + |
Blast
The following BLAST results are available for this feature:
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