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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053949 ID=TCONS_00053949|Name=TCONS_00053949|organism=Clytia hemisphaerica|type=transcript|length=2864bpRun BLAST on NCBI protein sequence of TCONS_00053949-protein >TCONS_00053949-protein ID=TCONS_00053949-protein|Name=TCONS_00053949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp QEPRDRHLRHLSFHACKFGTSARSIILTSSSFNSSSLSSEEFSTYSSFWYRun BLAST on NCBI transcript from alignment at scaffold_237:28767..47108- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053949 ID=TCONS_00053949|Name=TCONS_00053949|organism=Clytia hemisphaerica|type=transcript|length=18342bp|location=Sequence derived from alignment at scaffold_237:28767..47108- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_237:28767..47108- >TCONS_00053949 ID=TCONS_00053949|Name=TCONS_00053949|organism=Clytia hemisphaerica|type=CDS|length=22848bp|location=Sequence derived from alignment at scaffold_237:28767..47108- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053949 vs. Swiss-Prot (Human)
Match: PTBP1 (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1) HSP 1 Score: 414.075 bits (1063), Expect = 5.941e-133 Identity = 220/488 (45.08%), Postives = 303/488 (62.09%), Query Frame = 1
Query: 229 SKVLHIRQIAHDATESDLRVLGTPFGTVKNVLHMRSKNQAFLEMDSIDSAKTLINYYQYTTPTIRNMPVFIQFSQHQELRTNQQ------QPKEESANGVDS-----------------YEANGCVLKVIVTNIMYPVNIDVLKEVFQRCGELQKMVTFIRNDQFHALIQYANPKEASAAKTLFDRQNIYNGCNTLHVEFSKMTELTVKYNNEKMRDFTKPDVAIAQMGAMQPQMNPGMLPVPASFPPQMFQQNLGFTGNFPHHMMGNLSPNSQISYQPHMVSHNMGNQRQG-SVLLVSHLNEEKINCDDLFILFGHYGDVLRVKILFNKKNTALIQFTDASQSTTALQNLNNVTLYEQEMRVSRSKHDNVNMPKAEDEGKELTKEYVNSPLHRFKKPGSKNFKNIFPPICTLHLSNIPESVSEEEIKEMFTEYGGTINNFRFFPKDRRMALIQLSTIEEALVCLIKLHNKKLNESSHLRVSFAKDEM 1620
S+V+HIR++ D TE ++ LG PFG V N+L ++ KNQAF+EM++ ++A T++NYY TP +R P++IQFS H+EL+T+ Q ++ N V S VL++IV N+ YPV +DVL ++F + G + K++TF +N+QF AL+QYA+P A AK D QNIYN C TL ++FSK+T L VKYNN+K RD+T+PD+ G QP ++ M P N + P++ + G G SVLLVS+LN E++ LFILFG YGDV RVKILFNKK AL+Q D +Q+ A+ +LN L+ + +R++ SKH NV +P+ E + LTK+Y NSPLHRFKKPGSKNF+NIFPP TLHLSNIP SVSEE++K +F+ GG + F+FF KDR+MALIQ+ ++EEA+ LI LHN L E+ HLRVSF+K +
Sbjct: 58 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP---SGDSQPSLDQTMAAAFGLSVP-----------NVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 531 The following BLAST results are available for this feature:
BLAST of TCONS_00053949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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