TCONS_00053950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053950
Unique NameTCONS_00053950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length974

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053950 ID=TCONS_00053950|Name=TCONS_00053950|organism=Clytia hemisphaerica|type=transcript|length=974bp
ACAACGACATCATCACCGACGTCAAAACCTTCGACAACCCAACATCCTTC
GACAATACCTCCGCCATCAGAACTGGTCAACCTTTTAACGAGATTGATGT
CAATCTATTCCTTTGATCCAATAAATGATGATCTTTTTTGTGACGCAGGG
TATTGTGTCAGGTTAATATCAAAGGATCCTGTTTGTTACCAAGCGAAGGA
TGACAAACCTGGTGGATTTGAAGTACCATACAGTGGAGAGATCGTTATGG
TGATCCTCAAACATTTTTCTGGATCCATTTCATGTTACCCTGGTTATAAA
AGTTATTGGTTTTGCAAGAAACTTGGTACGGGAGCACACATGAGCCTTTT
GCTAACTAATAAAGCAGATCAGAAACTCGATTTCGACTCCGTGTTTATTC
GCGATATAAATCCAGAAATATTTGCATTCAAAAACGAATTGGGTTATGAA
GTCACAGAAGGTGATGAATTACGAATCTGGTTTTATGAAGATCGAGAAAA
TCATTTGGAAGATGATAACAGTGGAGAGCATTGTGTTTATGTTCATGTCG
TATATAAACGTGATACGATGACGGGTACAAGTGTGCTTACAAATGTGGTT
ACAAATTTGGTTACATAAATGAAATGGTTTTTAACGAGGGATAaattact
tgaaaaaaggtgtacgatactttttgacttttcgaattttcatttgactt
tttgacttttttttgactttttgtccaaaaacgccaaccgacaataaatt
ttgctccacccatcctCCCATTCAAGAACACTTTTAGATATTTTCtagac
tttttttttacttttatttgactttttgacttttttctaagaatttttca
ctttttctttgactttttgagtttttctttgactttttgtagaggtgtac
GATAGTTTTTGAGTGGTTTACCCGTCGGTTTTTAGTTATAATTAAAGTTC
AGGTACCACGACATCAACAAGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_237:118155..125035-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053950 ID=TCONS_00053950|Name=TCONS_00053950|organism=Clytia hemisphaerica|type=transcript|length=6881bp|location=Sequence derived from alignment at scaffold_237:118155..125035- (Clytia hemisphaerica)
ACAACGACATCATCACCGACATCGACATCATCACCGACAACGACATCATC
ACCGACAACGACATCAACGTCAAAACCTTCGACAACCCAACATCCTTCGA
CAATACCTCCGCCATCAGAACTGGTCAACCTTTTAACGAGATTGATGTCA
ATCTATTCCTTTGATCCAATAAATGATGATCTTTTTTGTGACGCAGGTGG
GTTTAACTTTTTGGGTACACGTTTTCTTTTATAAGAGCAAACTATATAAG
AACATAAGGCTTCGATGGCCAAAATCTTAAAAACCTGTTAAGAACATTTG
AAGGCTTCGCGGACTCTAAAACACCCGATTTCTTAAAAACTGGACAAAAA
TACTCAAAAATTGGCACAAATAAAAGAACATTTTAATTTTGGGTGGGGGG
GGGTCAATGTAAAGTGATTCTGGGGTGATTTTCCCAAAAACCCAAAAAAG
GTTTTGGCACTTTTTGGCACTTTTTCAGGAAAATTTCATAAAATGGTATT
GGGTGAGGGTGAGTGAACCCTCCCCTATCAATTAAGCACAAGAGTACTAG
GTTTCTGAGGTTACTCTTAGGTGTCAAATAAACGGGGGAGTTCGAATAAA
TGGGGGGGGGGGGTGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GGGGGGTTGGAAAAAAATCGAAAAATTAACAAGCGAGGGGGCCCGTTTAT
TTGGCACCTAAGAGTAAAGCCTTTAAACCTTAGAGTAGTTTCTCCTCAAA
TTATTCTCGCAACTTTGCTTGTTTTAAGTTCTTTAAAATAATGATCCTTT
GAGGACATAGATTTTCTCTTTCGTGATACACACGCTTTTTTAAGAATAGT
GTACTTTGGATGAGGATCAAATTATATTATTAAGAAATTGCCAAAATTGA
GGGTGAAATATTCTTCACGTATTCTTACTTTTTTAGACTTGACTTTTATA
CAAATATGAGAAATGATCAATTTGAGACTTTTTTTGAGTACACATTAAAA
TCATATTTCTGCCTCGAACTTTCAATTTAAGTCTAACAAAAGAAGCTAAC
GAAATACAAAATTGACACGGATATGTGAAGCAAGATTGGTCAGAAAGAAG
AAAAGAAAAACATTTCTTGCTTATATCAGCATAATATAACAATAGCAAGA
CACTGTCCTGATATGAAATATGTGTCTGATATGAAACGGAAATAATTATG
TAAAAAAAACCTTTATTAAAGTTATGTGTTTTAACTCGATGTGCTCATTT
ATTCTTCTAGGGTATTGTGTCAGGTTAATATCAAAGGATCCTGTTTGTTA
CCAAGCGAAGGATGACAAACCTGGTGGATTTGAAGTACCATACAGTGGAG
AGATCGTTATGGTGATCCTCAAACATTTTTCTGGATCCATTTCATGTTAC
CCTGGTACAAATTATTTCATTACTTAGGGACCACCAAAGACTAGGTTGCT
CATTTCCTACTGCCTCGTTTGCTATGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGGTAATAGCTCC
TGAAATAATAGAGCTTTTGTCATGAAATTTTCTGTAAATTCCTAACTTTT
ATTTAGCTTCAAAATAAATAAAAAATTGACACCTAAAAATTTTCACACCT
TGAACATGATGACATTTCTGATAGTAAGGTGTCACAAAAATTGACACTTT
TCCAATACAAATTTATTTTCTATGTCAAATTCATCGTTCAAACCGTAATT
TATTAAATATTTAGGATAAAATAAGCATTTTAAACCTTTGTTAGAATACA
AAAGCTATTTTTGTGAACAAAGGAAATTTTCGGATTTTGCTCACTTTGGG
CATGATGAGTGACGCCATCAAAAAAATGTTTGTCAAAAGTTACCTTATGT
GACAAGAATCTTGTGTGTCAAATTTCATCCAAAACGACCCACTAGATCAA
AAGTTAAGGGGTGGTACAGGAAAAGTTTTTTAGTTTTGAACCACCCCTAA
AAGCCTAGTATGAATAGGGTTAAAGTAAAATTATTTCTCTCATTTAAAAA
TCACATAAATAAGGTTGTCCGTAGGAGTAAAAAAAACAGCAAAAAATGGA
GTTTTTCGACCACTATTTATCTTCAATTTCTAAAAATTCTTTGAGTTATT
TTTCCCAAAGCTTAAAGTACTCTGAATTATCTTTTAAACGTCATATGATT
TGCTAGATTTGGAGGATTAATCGGAAAATAAAAAGCAAAACAAACACTGG
GCGAAATAAGAGATTTCCAATCCTGGAAATATCTTGAAAATATGATATTT
CCATTCACTTTTGTAAATATGGAAATATGACTTTTCTATATTTCCAAAGT
TGGAAATATTTTGAAAATATGATATTTCAATGAATTTCAGAATTGGGAAC
ATCATGAAATATGATATTTCCACAGCTTTCCAAGATATTTCCAGGATTGG
AAATCTCTTATTTCAACCAGTGAAAGATTAGTACACATTTGAGGCGAATG
AACTATGAATCTAAATTTAAATGAAATAGTTTTAACGGCCATCAAATNGG
TACTATGGTTGCAAGCTGACGAGGGGTGCCGCCCATCTTTCGACCCTCGG
ACCCTTACCGAGAGGAGAAAACAAAGGAAAGTTTTGTGAATTTTACGACC
CTTACCGGGACAAATTTGACGAATTTTGACCAAATTTCGATCTTTCAGGG
GGTAAAAAGTTGAAATTCTCCTATTTCTCCTACCCTTAGTGGGACTGAAA
TTTGATTTTCTGATTTTTCCGACCCTTAGCGGGACTTTGGAAATCCAAAA
AAGGTACCCTTAAGGGCGGCACATACCGTACCCTCCATTTGTCTAAGTTG
TCTAAGTAGCCCGCCCCCGCGGGCGAGAAAAAAAATTAGCGAAAACCTTT
TTCTATAAATCTGAAAAATTCTGATTCGCGAAACAGAAGAATTATATCAA
ATTAATATTAAATACTTAATGGGGATGGATATCAAATATTAAGATCAGAT
TTAAGGTAAATTTGTCCTTTTTAGGCCAATATTTGTTTAAAATTCTATTT
TTCGAAATCTAAAAATCCCGACAGTTTATGCTCGTGAGAGTAAATGTCTT
CAATTTAGCAAGTTTTTCGAACGACATAAAATATATACGCCTAAACTAAT
ATAGTTGACTCTATCTAATTCGATCTTCATGGGGCCAAAAACTTTCCTTC
GAATTAGAGAAAAATTCAAATTACAGAGAGTAAATTTAACCACTTTCCAC
CTGAGGGAACCAATATTTTAGTTCAAATTACAGAAAGATTGCAACCTTTT
TCTACCATTTCTAGGTTATAAAAGTTATTGGTTTTGCAAGAAACTTGGTA
CGGGAGCACACATGAGCCTTTTGCTAACTAATAAAGCAGATCAGAAACTC
GATTTCGACTCCGTGTTTATTCGTAAGTTTTAGCAAATTATTTTCTTACT
GATTATAATCCCTGGGTCATTAGATTAAATTCGTCTATACTTCGCAGGCA
GTAATATAGGCGCTTTAAAATAATATGAGAGTTTGTGTTGAACTACAATC
ATGGTCGAAACAATTTCAGAATTTAGTGTTTTTCAGAATTTAAAGTTCGG
GCGACAATTGTTGTTTTAGCACTTCCACTTTCTTTCATCGAATATTCCGA
TTTTGGAGGGGTTCGGTGGCTTCTAGGCTATATATTCCAAGCCTTATTGG
AGCTAATTTGAGCTTTTAAATCCTGAGATCCTAAGGTCTTAAGTCTTAAA
ACTTAGAGTTAAAACTCTACTTTCCAACTGTAGTTTAACCCGCTTAAAAA
TCTTTTGTGGTGTTATTTGAAATTTCGCCGGGAAATCTCCTTTGTCTCAA
ATGTTTTGTCCATGATTGTATGGTTTTTAGTTTTCGCAGCATACCCTACT
TAGGCCCGTCTAAGGCAGAACAAAGGGAGGATGGTGGGTTGGGAAAATCT
TCAAATTTTAATAAATTGTGGGTCCTAATTGTTCCTCTAAATACCTCCAA
AATAAGGTAATTATAGACTAAAACTTGGCTATTTAGCGCAAAAGAAGACA
GCTGAAAATATTTTCAAACATTAATTGCCGGGGGTCCTAATCATAGATTT
ATAAAGCCCCGAAGGGCTAGATGTCGTGCTTTCGCTTAAAAGTGTGCCAA
GGTTAAGTAGAAAATCCTACCTAGGTCACGTGACATTACAATAGACTTTC
AGCGCTTGACCAATAAGAAGCTTCGCGGGTTTTCGAAAGCAATAGCAGCA
ATCTTTTTTGAGATTTACTTTTTTCTTCAAAGTAGTATAAAATTGTCTCT
GTAATTCGAAAAAAATCCCTGGTCCCTTGAAGATCGAATTAGAGAGAGAA
AGTCAACTCTAGTTGTTTTTTTCTTAATGATTTTGTAAAAGCTCGTTACA
GTTGAAGCACTATTTCAAACACTTGCAAACTTGATATTTTAGGCGATATA
AATCCAGAAATATTTGCATTCAAAAACGAATTGGGTTATGAAGTCACAGA
AGGTGATGAATTACGAATCTGGTTTTATGAAGATCGAGAAAATCATTTGG
AAGATGATAACAGTGGAGAGCATTGTGTNAGATCATCTAAAATTAACAAT
TTTCTTTTGAAATTTTAGGAGCTTTCCTCCTGATATTTTGAGGGAGACAT
TTCAGATCTTCGCAATTTTGGAGCCTGTAATAGAGACTGATTTGCTTTTT
TATAGATTTTGCACCCCCTTTGTGAGGCTTGTGAGGGTTTTGATGAATTC
TCCCGTGCAAAATGATTTCATAGTTATCACACATTATTGTTTTCAGTTTT
TAGATGACATAACTATCAAGAAAGAAAGAAACAACAATCTTTCATTTTTG
TACAACTCTAAGTTCATGTCTTTAGATAATGATCAGCTACTGAATAGCTT
TTATCAAAATGAAATACAGTAAACTCTCTCTAATTCGAACCTCTATTATT
CAAATCTTTCTATAATTCGAACTAAAATTTTAGTCTCAACTTCAAAGTAG
TATAAAATGGTCTCTGTAATTCGAAGAAAATCCCTGGTCCCTTGAAGATC
GAATTAGAGAGAGAAAGTCAACTCTAGTTGTTTTTTTCTTAATGATTTTG
TAAAAGCTCGTTACAGTTGAAGCACTATTTCAAACACTTGCAAACTTGAT
ATTTTAGGCGATATAAATCCAGAAATATTTGCATTCAAAAACGAATTGGG
TTATGAAGTCACAGAAGGTGATGAATTACGAATCTGGTTTTATGAAGATC
GAGAAAATCATTTGGAAGATGATAACAGTGGAGAGCATTGTGTTTATGTT
CATGTCGTATATAAACGTGATACGATGACGGGTACAAGTGTGCTTACAAA
TGTGGTTACAAATTTGGTTACATAAATGAAATGGTTTTTAACGAGGGATA
AATTACTTGAAAAAAGGTGTACGATACTTTTTGACTTTTCGAATTTTCAT
TTGACTTTTTGACTTTTTTTTGACTTTTTGTCCAAAAACGCCAACCGACA
ATAAATTTTGCTCCACCCATCCTCCCATTCAAGAACACTTTTAGATATTT
TCTAGACTTTTTTTTTACTTTTATTTGACTTTTTGACTTTTTTCTAAGAA
TTTTTCACTTTTTCTTTGACTTTTTGAGTTTTTCTTTGACTTTTTGTAGA
GGTGTACGATAGTTTTTGAGTGGTTTACCCGTCGGTTTTTAGTTATAATT
AAAGTTCAGGTACCACGACATCAACAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034059XLOC_034059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053950-exon-scaffold_237-1575043694:125016..125035TCONS_00053950-exon-scaffold_237-1575043694:125016..125035Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1575043694:124840..124967TCONS_00053950-exon-scaffold_237-1575043694:124840..124967Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1575043694:122632..122775TCONS_00053950-exon-scaffold_237-1575043694:122632..122775Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1575043694:120464..120571TCONS_00053950-exon-scaffold_237-1575043694:120464..120571Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1575043694:118155..118728TCONS_00053950-exon-scaffold_237-1575043694:118155..118728Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1510915933:125016..125035TCONS_00053950-exon-scaffold_237-1510915933:125016..125035Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1510915933:124840..124967TCONS_00053950-exon-scaffold_237-1510915933:124840..124967Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1510915933:122632..122775TCONS_00053950-exon-scaffold_237-1510915933:122632..122775Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1510915933:120464..120571TCONS_00053950-exon-scaffold_237-1510915933:120464..120571Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1510915933:118155..118728TCONS_00053950-exon-scaffold_237-1510915933:118155..118728Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1491911889:125016..125035TCONS_00053950-exon-scaffold_237-1491911889:125016..125035Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1491911889:124840..124967TCONS_00053950-exon-scaffold_237-1491911889:124840..124967Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1491911889:122632..122775TCONS_00053950-exon-scaffold_237-1491911889:122632..122775Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1491911889:120464..120571TCONS_00053950-exon-scaffold_237-1491911889:120464..120571Clytia hemisphaericaexon
TCONS_00053950-exon-scaffold_237-1491911889:118155..118728TCONS_00053950-exon-scaffold_237-1491911889:118155..118728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:118155..125035 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.00038832	0	2.58898e-05	0	0.292698	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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