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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053953 ID=TCONS_00053953|Name=TCONS_00053953|organism=Clytia hemisphaerica|type=transcript|length=654bp
TACCGACAACGACATCACCACCGACAACGACATCATCACCGACAACGACA
TCATCACCGACAACGACATCATCACCAACAACGACATCATCACCGACAAC
GACATCATCACCGACATCGACATCATCACCGACAACGACATCATCACCGA
CAACGACATCAACGTCAAAACCTTCGACAACCCAACATCCTTCGACAATA
CCTCCGCCATCAGAACTGGTCAACCTTTTAACGAGATTGATGTCAATCTA
TTCCTTTGATCCAATAAATGATGATCTTTTTTGTGACGCAGGGTATTGTG
TCAGGTTAATATCAAAGGATCCTGTTTGTTACCAAGCGAAGGATGACAAA
CCTGGTGGATTTGAAGTACCATACAGTGGAGAGATCGTTATGGTGATCCT
CAAACATTTTTCTGGATCCATTTCATGTTACCCTGGTTATAAAAGTTATT
GGTTTTGCAAGAAACTTGGTACGGGAGCACACATGAGCCTTTTGCTAACT
AATAAAGCAGATCAGAAACTCGATTTCGACTCCGTGTTTATTCGCGATAT
AAATCCAGAAATATTTGCATTCAAAAACGAATTGGGTTATGAAGTCACAG
AAGGTGATGAATTACGAATCTGGTTTTATGAAGATCGAGAAAATCATTTG
GAAG Run BLAST on NCBI transcript from alignment at scaffold_237:119333..125130- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053953 ID=TCONS_00053953|Name=TCONS_00053953|organism=Clytia hemisphaerica|type=transcript|length=5798bp|location=Sequence derived from alignment at scaffold_237:119333..125130- (Clytia hemisphaerica)
TACCGACAACGACATCACCACCGACAACGACATCATCACCGACAACGACA
TCATCACCGACAACGACATCATCACCAACAACGACATCATCACCGACAAC
GACATCATCACCGACATCGACATCATCACCGACAACGACATCATCACCGA
CAACGACATCAACGTCAAAACCTTCGACAACCCAACATCCTTCGACAATA
CCTCCGCCATCAGAACTGGTCAACCTTTTAACGAGATTGATGTCAATCTA
TTCCTTTGATCCAATAAATGATGATCTTTTTTGTGACGCAGGTGGGTTTA
ACTTTTTGGGTACACGTTTTCTTTTATAAGAGCAAACTATATAAGAACAT
AAGGCTTCGATGGCCAAAATCTTAAAAACCTGTTAAGAACATTTGAAGGC
TTCGCGGACTCTAAAACACCCGATTTCTTAAAAACTGGACAAAAATACTC
AAAAATTGGCACAAATAAAAGAACATTTTAATTTTGGGTGGGGGGGGGTC
AATGTAAAGTGATTCTGGGGTGATTTTCCCAAAAACCCAAAAAAGGTTTT
GGCACTTTTTGGCACTTTTTCAGGAAAATTTCATAAAATGGTATTGGGTG
AGGGTGAGTGAACCCTCCCCTATCAATTAAGCACAAGAGTACTAGGTTTC
TGAGGTTACTCTTAGGTGTCAAATAAACGGGGGAGTTCGAATAAATGGGG
GGGGGGGGTGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGG
GTTGGAAAAAAATCGAAAAATTAACAAGCGAGGGGGCCCGTTTATTTGGC
ACCTAAGAGTAAAGCCTTTAAACCTTAGAGTAGTTTCTCCTCAAATTATT
CTCGCAACTTTGCTTGTTTTAAGTTCTTTAAAATAATGATCCTTTGAGGA
CATAGATTTTCTCTTTCGTGATACACACGCTTTTTTAAGAATAGTGTACT
TTGGATGAGGATCAAATTATATTATTAAGAAATTGCCAAAATTGAGGGTG
AAATATTCTTCACGTATTCTTACTTTTTTAGACTTGACTTTTATACAAAT
ATGAGAAATGATCAATTTGAGACTTTTTTTGAGTACACATTAAAATCATA
TTTCTGCCTCGAACTTTCAATTTAAGTCTAACAAAAGAAGCTAACGAAAT
ACAAAATTGACACGGATATGTGAAGCAAGATTGGTCAGAAAGAAGAAAAG
AAAAACATTTCTTGCTTATATCAGCATAATATAACAATAGCAAGACACTG
TCCTGATATGAAATATGTGTCTGATATGAAACGGAAATAATTATGTAAAA
AAAACCTTTATTAAAGTTATGTGTTTTAACTCGATGTGCTCATTTATTCT
TCTAGGGTATTGTGTCAGGTTAATATCAAAGGATCCTGTTTGTTACCAAG
CGAAGGATGACAAACCTGGTGGATTTGAAGTACCATACAGTGGAGAGATC
GTTATGGTGATCCTCAAACATTTTTCTGGATCCATTTCATGTTACCCTGG
TACAAATTATTTCATTACTTAGGGACCACCAAAGACTAGGTTGCTCATTT
CCTACTGCCTCGTTTGCTATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGGTAATAGCTCCTGAAA
TAATAGAGCTTTTGTCATGAAATTTTCTGTAAATTCCTAACTTTTATTTA
GCTTCAAAATAAATAAAAAATTGACACCTAAAAATTTTCACACCTTGAAC
ATGATGACATTTCTGATAGTAAGGTGTCACAAAAATTGACACTTTTCCAA
TACAAATTTATTTTCTATGTCAAATTCATCGTTCAAACCGTAATTTATTA
AATATTTAGGATAAAATAAGCATTTTAAACCTTTGTTAGAATACAAAAGC
TATTTTTGTGAACAAAGGAAATTTTCGGATTTTGCTCACTTTGGGCATGA
TGAGTGACGCCATCAAAAAAATGTTTGTCAAAAGTTACCTTATGTGACAA
GAATCTTGTGTGTCAAATTTCATCCAAAACGACCCACTAGATCAAAAGTT
AAGGGGTGGTACAGGAAAAGTTTTTTAGTTTTGAACCACCCCTAAAAGCC
TAGTATGAATAGGGTTAAAGTAAAATTATTTCTCTCATTTAAAAATCACA
TAAATAAGGTTGTCCGTAGGAGTAAAAAAAACAGCAAAAAATGGAGTTTT
TCGACCACTATTTATCTTCAATTTCTAAAAATTCTTTGAGTTATTTTTCC
CAAAGCTTAAAGTACTCTGAATTATCTTTTAAACGTCATATGATTTGCTA
GATTTGGAGGATTAATCGGAAAATAAAAAGCAAAACAAACACTGGGCGAA
ATAAGAGATTTCCAATCCTGGAAATATCTTGAAAATATGATATTTCCATT
CACTTTTGTAAATATGGAAATATGACTTTTCTATATTTCCAAAGTTGGAA
ATATTTTGAAAATATGATATTTCAATGAATTTCAGAATTGGGAACATCAT
GAAATATGATATTTCCACAGCTTTCCAAGATATTTCCAGGATTGGAAATC
TCTTATTTCAACCAGTGAAAGATTAGTACACATTTGAGGCGAATGAACTA
TGAATCTAAATTTAAATGAAATAGTTTTAACGGCCATCAAATNGGTACTA
TGGTTGCAAGCTGACGAGGGGTGCCGCCCATCTTTCGACCCTCGGACCCT
TACCGAGAGGAGAAAACAAAGGAAAGTTTTGTGAATTTTACGACCCTTAC
CGGGACAAATTTGACGAATTTTGACCAAATTTCGATCTTTCAGGGGGTAA
AAAGTTGAAATTCTCCTATTTCTCCTACCCTTAGTGGGACTGAAATTTGA
TTTTCTGATTTTTCCGACCCTTAGCGGGACTTTGGAAATCCAAAAAAGGT
ACCCTTAAGGGCGGCACATACCGTACCCTCCATTTGTCTAAGTTGTCTAA
GTAGCCCGCCCCCGCGGGCGAGAAAAAAAATTAGCGAAAACCTTTTTCTA
TAAATCTGAAAAATTCTGATTCGCGAAACAGAAGAATTATATCAAATTAA
TATTAAATACTTAATGGGGATGGATATCAAATATTAAGATCAGATTTAAG
GTAAATTTGTCCTTTTTAGGCCAATATTTGTTTAAAATTCTATTTTTCGA
AATCTAAAAATCCCGACAGTTTATGCTCGTGAGAGTAAATGTCTTCAATT
TAGCAAGTTTTTCGAACGACATAAAATATATACGCCTAAACTAATATAGT
TGACTCTATCTAATTCGATCTTCATGGGGCCAAAAACTTTCCTTCGAATT
AGAGAAAAATTCAAATTACAGAGAGTAAATTTAACCACTTTCCACCTGAG
GGAACCAATATTTTAGTTCAAATTACAGAAAGATTGCAACCTTTTTCTAC
CATTTCTAGGTTATAAAAGTTATTGGTTTTGCAAGAAACTTGGTACGGGA
GCACACATGAGCCTTTTGCTAACTAATAAAGCAGATCAGAAACTCGATTT
CGACTCCGTGTTTATTCGTAAGTTTTAGCAAATTATTTTCTTACTGATTA
TAATCCCTGGGTCATTAGATTAAATTCGTCTATACTTCGCAGGCAGTAAT
ATAGGCGCTTTAAAATAATATGAGAGTTTGTGTTGAACTACAATCATGGT
CGAAACAATTTCAGAATTTAGTGTTTTTCAGAATTTAAAGTTCGGGCGAC
AATTGTTGTTTTAGCACTTCCACTTTCTTTCATCGAATATTCCGATTTTG
GAGGGGTTCGGTGGCTTCTAGGCTATATATTCCAAGCCTTATTGGAGCTA
ATTTGAGCTTTTAAATCCTGAGATCCTAAGGTCTTAAGTCTTAAAACTTA
GAGTTAAAACTCTACTTTCCAACTGTAGTTTAACCCGCTTAAAAATCTTT
TGTGGTGTTATTTGAAATTTCGCCGGGAAATCTCCTTTGTCTCAAATGTT
TTGTCCATGATTGTATGGTTTTTAGTTTTCGCAGCATACCCTACTTAGGC
CCGTCTAAGGCAGAACAAAGGGAGGATGGTGGGTTGGGAAAATCTTCAAA
TTTTAATAAATTGTGGGTCCTAATTGTTCCTCTAAATACCTCCAAAATAA
GGTAATTATAGACTAAAACTTGGCTATTTAGCGCAAAAGAAGACAGCTGA
AAATATTTTCAAACATTAATTGCCGGGGGTCCTAATCATAGATTTATAAA
GCCCCGAAGGGCTAGATGTCGTGCTTTCGCTTAAAAGTGTGCCAAGGTTA
AGTAGAAAATCCTACCTAGGTCACGTGACATTACAATAGACTTTCAGCGC
TTGACCAATAAGAAGCTTCGCGGGTTTTCGAAAGCAATAGCAGCAATCTT
TTTTGAGATTTACTTTTTTCTTCAAAGTAGTATAAAATTGTCTCTGTAAT
TCGAAAAAAATCCCTGGTCCCTTGAAGATCGAATTAGAGAGAGAAAGTCA
ACTCTAGTTGTTTTTTTCTTAATGATTTTGTAAAAGCTCGTTACAGTTGA
AGCACTATTTCAAACACTTGCAAACTTGATATTTTAGGCGATATAAATCC
AGAAATATTTGCATTCAAAAACGAATTGGGTTATGAAGTCACAGAAGGTG
ATGAATTACGAATCTGGTTTTATGAAGATCGAGAAAATCATTTGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053953-exon-scaffold_237-1575043694:124840..125130 | TCONS_00053953-exon-scaffold_237-1575043694:124840..125130 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1575043694:122632..122775 | TCONS_00053953-exon-scaffold_237-1575043694:122632..122775 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1575043694:120464..120571 | TCONS_00053953-exon-scaffold_237-1575043694:120464..120571 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1575043694:119333..119443 | TCONS_00053953-exon-scaffold_237-1575043694:119333..119443 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1510915933:124840..125130 | TCONS_00053953-exon-scaffold_237-1510915933:124840..125130 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1510915933:122632..122775 | TCONS_00053953-exon-scaffold_237-1510915933:122632..122775 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1510915933:120464..120571 | TCONS_00053953-exon-scaffold_237-1510915933:120464..120571 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1510915933:119333..119443 | TCONS_00053953-exon-scaffold_237-1510915933:119333..119443 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1491911889:124840..125130 | TCONS_00053953-exon-scaffold_237-1491911889:124840..125130 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1491911889:122632..122775 | TCONS_00053953-exon-scaffold_237-1491911889:122632..122775 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1491911889:120464..120571 | TCONS_00053953-exon-scaffold_237-1491911889:120464..120571 | Clytia hemisphaerica | exon |
| TCONS_00053953-exon-scaffold_237-1491911889:119333..119443 | TCONS_00053953-exon-scaffold_237-1491911889:119333..119443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:119333..125130 - |
Blast
The following BLAST results are available for this feature:
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