TCONS_00053954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053954
Unique NameTCONS_00053954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053954 ID=TCONS_00053954|Name=TCONS_00053954|organism=Clytia hemisphaerica|type=transcript|length=888bp
ATTTTGAATTGATTGAGATTGGCTGATTTTTTTTGTCTACGGATATTTTT
TCATCCTTTCGGCCAGATTAAAACGATCCAAGAAATGGTCAACGTAAATC
ATTTGAATATATTATATTCACTGATAATTATAATTCACAATGGCCTCACA
TTTAATGATGAAATCGAatttaattatgtttttgatgaaAGTAAATTTTT
AACGCGACCGATTCTCGTAAAAGAAAATATGTTTCAAGTGACGAAATGTT
TAACATTGTGTTGTATGGATCAATCTTGTGCTGGATTCAACATTCATCTT
AAGAGAGGGATTTGCGAGCTTCTGGATTTCGAAGAAGAAACGCGACAAGA
AACCCGTCAAAGACTTGTTTGTAAAGAAAAATGGGCTTTCTATGGTATAT
CAAATAGAAAGAACACAGGTAGAAACAGAGACACAGCGACAACCCAATCA
ACGACTGTTAATACTACACCTACCACGAAAGTCGCAGAAACAACTTCACC
AGCTACAACATCAACGACACCCAAAACGTCTTCAACAACACCAAAAACGT
CTTCAGCAACACCTAACAAGATTTCAGAACAAGCTACAACAGCAAAATCG
ACCACGACGTCCACAACAACAACCCATACACCGCCCCAAACGTCTTCGAA
TCCACCCACAACGTTTACAACAACTACCACTCAAACGACTTCGACAAGCT
CGCAAATTACAACAACTGTTCCCGATACTACGAAAGCAATACCAACTGCA
GAAGCAACAACAAAAGCGAAAACTATCCAACAGCAAACGACAACATCTCG
GACAACAATCCCACAGTCAACAACAGCATCTTCGACAACCATCAAACAAC
CAAAGACAACATCTCTGACAACGACATCCTCGCCGACA
Run BLAST on NCBI

protein sequence of TCONS_00053954-protein

>TCONS_00053954-protein ID=TCONS_00053954-protein|Name=TCONS_00053954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MVNVNHLNILYSLIIIIHNGLTFNDEIEFNYVFDESKFLTRPILVKENMF
QVTKCLTLCCMDQSCAGFNIHLKRGICELLDFEEETRQETRQRLVCKEKW
AFYGISNRKNTGRNRDTATTQSTTVNTTPTTKVAETTSPATTSTTPKTSS
TTPKTSSATPNKISEQATTAKSTTTSTTTTHTPPQTSSNPPTTFTTTTTQ
TTSTSSQITTTVPDTTKAIPTAEATTKAKTIQQQTTTSRTTIPQSTTASS
TTIKQPKTTSLTTTSSPT
Run BLAST on NCBI

transcript from alignment at scaffold_237:126097..130137-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053954 ID=TCONS_00053954|Name=TCONS_00053954|organism=Clytia hemisphaerica|type=transcript|length=4041bp|location=Sequence derived from alignment at scaffold_237:126097..130137- (Clytia hemisphaerica)
ATTTTGAATTGATTGAGATTGGCTGATTTTTTTTGTCTACGGATATTTTT
TCATCCTTTCGGCCAGATTAAAACGATCCAAGAAATGGTCAACGTAAATC
ATTTGAATATATTATATTCACTGATAATTATAATTCACAATGGCCTCACA
TTTAATGATGAAATCGAATTTAATTATGTTTTTGATGAAAGTAAATTTTT
AACGCGACCGATTCTCGTAAAAGAAAATATGTTTCAAGTGACGAAATGTT
TAACATTGTGTTGTATGGATCAATCTTGTGCTGGATTCAACATTCATCTT
AAGGTAAACCTGGGATTAGATTGTGATTGTTTTCTACCCACCACGCTGAA
GCTCTAAAAGGATGGGTGAAAACATAACAATCTGAAGAATATGCTCAAAA
CCTTAAAAACCGTAAAGACCGCGCTCGTCTAAAAGGACTGGGAATGACAA
CAAAGTTGCGTGATTGTGTTTGAAAATAGGGCGCCATATGAGGAAAATTT
AGTTTTTGACTTTCCGGCCCACAAGATTCTTGTTGTAGAATTTTCCACGC
GAGTACTATTTTCCTCAGGAGATGGTTAATTTTCAAGTGTCTTTAGAGGT
TTACCGTGCACGTAATAAAATTATGACCAGCTCTTAAGGTAATCTTCTTG
TTAACCTGTACCACCCCCCCCCAGGGCGTTTTTTATATTTTGAAAAAAAT
ATTTTTCGGACATTGTCTCTAAAAGAGTACCGTAAGTTGGTCTAATGTTG
ACATGACATGTTATTCCGACGCCCTTCTTAGAGATAAGATTAAAAGGAAG
GTCGGAATCACTGATTGAAAAGAAGATGTTTTCCATTCTGACCCTTTAGT
AGCGATCAGCGATTCCGACCTTTCATTATTCAGCATTAGACCAACTTATG
GTAACTAAACAATCTGGCTCTGCGACTCTGTTAAACTGATGGTGAGGGGG
CCAGATAACACAGCCCTTCTCATAACGTTTACATCTGTATCAGAGTGTAC
CACACGTTTATCGCTTCGTACTTAGTACACTCTGTGCGCAATGTCTGTTT
AATAAAAAATTTCCCATACGGAGACCTCTGCAAAGAAGTATGATTTATAA
ATAGCAAGACTTCTCTCATTGTCTCCCCTCTCTCACCAACACCCTATCGC
AGCGGTGGATTTGAGAAATCTCAAATGAGAAAGGACAATGACAACAGACC
CTCTACGGCAATAAATTTTGAAATTAGCCGTAGATATCGGGTCTGTGTAC
AAACAACATAACGTTATGAAGTTACACAATTACCCATCACCATCATACAA
ATTGAAAAGATGGAATTCAGCAAACGGGATTTTGTCGCCGGTTTCCCGGG
TTCCTAACGGTTAATTTTTCACAAATTTTGGCTCTCTAAGGGTCACTTTT
TTGCAACAATTTAGTCTCTCTAAGGGTCCGATCCCCATTCTCCAACCCTA
GCCCCCCCTCTCAATGTTTTAGGATTTCAATATTTTCTGTTTAAAGCTCA
AAAATACAGCCGGGATTAAGATTTTTTTTTGTTTTACTGTATAGATTATA
GATTTTTTTATATAGATGAAATTTCAAGGTATTTCTCAAGTACAGTCTTA
GTGGGTATGAGGATAACGAGGGCAGTGTACAGATTGAGGGGTAAAACACT
CCGAAAAAAAACGTCCGTGATTTTTTTGATTTTACTGATTTTGCTATTGC
TTCTTTTATTTAATTGATATTTTTTGATTTTCACTTTGATTTCTTTAATT
TTATTGATTTCGACCTTGATTTTTACTGATTTTGAAAAAAAAGTGTAAGT
GATTTTCCCGAGTGTTTTACCCCTTGGTACAGATATACACGTTGTTTTTT
TAAACAAGAACATCAAAATTTTTTGAAGCCTTTGGATGTTCTTAACATGT
TCTTATTTCGACCATTTTGTAAGAATTTTTGACCATTTTCATAAGAAAAA
GGGCGTTTTTGAGTCCACAAAGCCTTAAAATGTTCTTAACCTGTTCTTAA
TATTTTGGCCAACGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAA
AAACGTGTAATTTTTCCCTTTTTACATTGTAGAGAGGGATTTGCGAGCTT
CTGGATTTCGAAGAAGAAACGCGACAAGAAACCCGTCAAAGACTTGTTTG
TAAAGAAAAATGGGCTTTCTATGGTATATCAAATAGAAAGGTAGTTAAAG
GGACATAAAAGTAGTAAAATGTAAACATTGTGCGAGCCACACTAGCCTAT
CTCTATCCCAACACGCGAATTTTTTATCACTCTGTTGGTCTATCACTTGT
CACCACGGACAGAACGGTGTCGAGGAAAAAGCCGTGGTCGTCTGGTACAG
GCAAGAACCACACGTGTCATTAAAGAGAACAATTAAAATCACGTGTCTAA
AACAAACTTGTAAAACAATTGAAATAATCAAAATCAGCCAAATTTGTTTT
TTATTATTATTTTGACATGTGACGTTTGTTTTGATTTTGTATCCCGGCTG
CATACGGATTGTTTACAAATTTCGTCAGTACTTTTATGTCCCTTTAAGCA
ATGTAATAGAGCTGGCGGCGAATCTTCAATCTCGAACCCAGTCCCTTATA
GTTCATTCTATCATTCTTATAAAGCTCGCGAAAGCGTATCGCGTCCATCA
CTAAAATCAGGAACTGGTGAAAGTGAATCTGGGTACGAAATAGGCAAATC
TTCAACCATTCTCAGGCGAAAAAAAGTGACGCCTTAAAATTTGAGCGGAT
TTCGTATGACGGAACGAATCTTGTATCTTCTTTGGGGGGGCGTACGGGTT
TGACGGTGTGACGGTATTAACCCTTTTTTCTGTCGGTGTTTCGGTGTTTG
AAGAAAAAAGTGACGGTATTTCGATGTTAAACATGCCATGCGGTGACAAA
AATAAGGATTTTACCAAATTTTGCTGTCGGTGTTGACGGTAATCCAAGAA
ATACGCGTCGGTATTTCGGTGTCTGCGACCCCCGTACGCCCCCTTCTTTG
TTTTTGCTTTTTAAACTTTTTCAATACTAAGGCACCACTTCCAATCCAGG
GTCTAAATGAAAACTAGGCGGGCATAAATATTGTAGAATAATGTAGGAAA
AAAGCGGCTTCGAATCCTACATCGGAGATTCGACTGTAGCCCGCATTTGG
CTATATTTTATTGAAGTATAATTATAAATTTCAAGTTTTAGAAAAGGATA
AAATATTGTTTTCACTGTTCTAACTTTATCCGAGATGGTAAGAGATTATG
TTCTGAGTTCTCTAGGGAAACCCAGCCAGAATGTCTGAGAAATTCGAATG
ATGTACAGAAAATTAACCAAGTGGGTAATTCTCTAAAAAAATTTTCCATT
TTCTTAAAATTACTTCGCAAGAAATGTCGTGGTGGCCAGAGAGGGCCTAA
GCCAGGCCGTTTAACAGAGGGGCACGTAGAATGTGGCCCCATAGGTAGGC
ACCTTTATTTTGCTTGCCACCCCCCTCCCACCTGCTCTCGCAGAAAAAAA
ACGTGACAAAGCCTCCGGGCTATTTGGAAGCTTTGAATATTCTCTTTTTT
TTTAACATTTACAGAACACAGGTAGAAACAGAGACACAGCGACAACCCAA
TCAACGACTGTTAATACTACACCTACCACGAAAGTCGCAGAAACAACTTC
ACCAGCTACAACATCAACGACACCCAAAACGTCTTCAACAACACCAAAAA
CGTCTTCAGCAACACCTAACAAGATTTCAGAACAAGCTACAACAGCAAAA
TCGACCACGACGTCCACAACAACAACCCATACACCGCCCCAAACGTCTTC
GAATCCACCCACAACGTTTACAACAACTACCACTCAAACGACTTCGACAA
GCTCGCAAATTACAACAACTGTTCCCGATACTACGAAAGCAATACCAACT
GCAGAAGCAACAACAAAAGCGAAAACTATCCAACAGCAAACGACAACATC
TCGGACAACAATCCCACAGTCAACAACAGCATCTTCGACAACCATCAAAC
AACCAAAGACAACATCTCTGACAACGACATCCTCGCCGACA

Coding sequence (CDS) from alignment at scaffold_237:126097..130137-

>TCONS_00053954 ID=TCONS_00053954|Name=TCONS_00053954|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_237:126097..130137- (Clytia hemisphaerica)
AACACAGGTAGAAACAGAGACACAGCGACAACCCAATCAACGACTGTTAA
TACTACACCTACCACGAAAGTCGCAGAAACAACTTCACCAGCTACAACAT
CAACGACACCCAAAACGTCTTCAACAACACCAAAAACGTCTTCAGCAACA
CCTAACAAGATTTCAGAACAAGCTACAACAGCAAAATCGACCACGACGTC
CACAACAACAACCCATACACCGCCCCAAACGTCTTCGAATCCACCCACAA
CGTTTACAACAACTACCACTCAAACGACTTCGACAAGCTCGCAAATTACA
ACAACTGTTCCCGATACTACGAAAGCAATACCAACTGCAGAAGCAACAAC
AAAAGCGAAAACTATCCAACAGCAAACGACAACATCTCGGACAACAATCC
CACAGTCAACAACAGCATCTTCGACAACCATCAAACAACCAAAGACAACA
TCTCTGACAACGACATCCTCGCCGACAAGAGGGATTTGCGAGCTTCTGGA
TTTCGAAGAAGAAACGCGACAAGAAACCCGTCAAAGACTTGTTTGTAAAG
AAAAATGGGCTTTCTATGGTATATCAAATAGAAAGATGGTCAACGTAAAT
CATTTGAATATATTATATTCACTGATAATTATAATTCACAATGGCCTCAC
ATTTAATGATGAAATCGAATTTAATTATGTTTTTGATGAAAGTAAATTTT
TAACGCGACCGATTCTCGTAAAAGAAAATATGTTTCAAGTGACGAAATGT
TTAACATTGTGTTGTATGGATCAATCTTGTGCTGGATTCAACATTCATCT
TAAGAACACAGGTAGAAACAGAGACACAGCGACAACCCAATCAACGACTG
TTAATACTACACCTACCACGAAAGTCGCAGAAACAACTTCACCAGCTACA
ACATCAACGACACCCAAAACGTCTTCAACAACACCAAAAACGTCTTCAGC
AACACCTAACAAGATTTCAGAACAAGCTACAACAGCAAAATCGACCACGA
CGTCCACAACAACAACCCATACACCGCCCCAAACGTCTTCGAATCCACCC
ACAACGTTTACAACAACTACCACTCAAACGACTTCGACAAGCTCGCAAAT
TACAACAACTGTTCCCGATACTACGAAAGCAATACCAACTGCAGAAGCAA
CAACAAAAGCGAAAACTATCCAACAGCAAACGACAACATCTCGGACAACA
ATCCCACAGTCAACAACAGCATCTTCGACAACCATCAAACAACCAAAGAC
AACATCTCTGACAACGACATCCTCGCCGACAAGAGGGATTTGCGAGCTTC
TGGATTTCGAAGAAGAAACGCGACAAGAAACCCGTCAAAGACTTGTTTGT
AAAGAAAAATGGGCTTTCTATGGTATATCAAATAGAAAGATGGTCAACGT
AAATCATTTGAATATATTATATTCACTGATAATTATAATTCACAATGGCC
TCACATTTAATGATGAAATCGAATTTAATTATGTTTTTGATGAAAGTAAA
TTTTTAACGCGACCGATTCTCGTAAAAGAAAATATGTTTCAAGTGACGAA
ATGTTTAACATTGTGTTGTATGGATCAATCTTGTGCTGGATTCAACATTC
ATCTTAAGAACACAGGTAGAAACAGAGACACAGCGACAACCCAATCAACG
ACTGTTAATACTACACCTACCACGAAAGTCGCAGAAACAACTTCACCAGC
TACAACATCAACGACACCCAAAACGTCTTCAACAACACCAAAAACGTCTT
CAGCAACACCTAACAAGATTTCAGAACAAGCTACAACAGCAAAATCGACC
ACGACGTCCACAACAACAACCCATACACCGCCCCAAACGTCTTCGAATCC
ACCCACAACGTTTACAACAACTACCACTCAAACGACTTCGACAAGCTCGC
AAATTACAACAACTGTTCCCGATACTACGAAAGCAATACCAACTGCAGAA
GCAACAACAAAAGCGAAAACTATCCAACAGCAAACGACAACATCTCGGAC
AACAATCCCACAGTCAACAACAGCATCTTCGACAACCATCAAACAACCAA
AGACAACATCTCTGACAACGACATCCTCGCCGACAAGAGGGATTTGCGAG
CTTCTGGATTTCGAAGAAGAAACGCGACAAGAAACCCGTCAAAGACTTGT
TTGTAAAGAAAAATGGGCTTTCTATGGTATATCAAATAGAAAGATGGTCA
ACGTAAATCATTTGAATATATTATATTCACTGATAATTATAATTCACAAT
GGCCTCACATTTAATGATGAAATCGAATTTAATTATGTTTTTGATGAAAG
TAAATTTTTAACGCGACCGATTCTCGTAAAAGAAAATATGTTTCAAGTGA
CGAAATGTTTAACATTGTGTTGTATGGATCAATCTTGTGCTGGATTCAAC
ATTCATCTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034060XLOC_034060Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053954-proteinTCONS_00053954-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053954-exon-scaffold_237-1575043694:129835..130137TCONS_00053954-exon-scaffold_237-1575043694:129835..130137Clytia hemisphaericaexon
TCONS_00053954-exon-scaffold_237-1575043694:127948..128055TCONS_00053954-exon-scaffold_237-1575043694:127948..128055Clytia hemisphaericaexon
TCONS_00053954-exon-scaffold_237-1575043694:126097..126573TCONS_00053954-exon-scaffold_237-1575043694:126097..126573Clytia hemisphaericaexon
TCONS_00053954-exon-scaffold_237-1510915933:129835..130137TCONS_00053954-exon-scaffold_237-1510915933:129835..130137Clytia hemisphaericaexon
TCONS_00053954-exon-scaffold_237-1510915933:127948..128055TCONS_00053954-exon-scaffold_237-1510915933:127948..128055Clytia hemisphaericaexon
TCONS_00053954-exon-scaffold_237-1510915933:126097..126573TCONS_00053954-exon-scaffold_237-1510915933:126097..126573Clytia hemisphaericaexon
TCONS_00053954-exon-scaffold_237-1491911889:129835..130137TCONS_00053954-exon-scaffold_237-1491911889:129835..130137Clytia hemisphaericaexon
TCONS_00053954-exon-scaffold_237-1491911889:127948..128055TCONS_00053954-exon-scaffold_237-1491911889:127948..128055Clytia hemisphaericaexon
TCONS_00053954-exon-scaffold_237-1491911889:126097..126573TCONS_00053954-exon-scaffold_237-1491911889:126097..126573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:126097..130137 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.152856	0	0	0	0.05568	0.335878	0.503112	2.02538	1.90884	2.488	2.33148	0.0347498	0	0	0	0	0	0.0555429	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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