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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053970 ID=TCONS_00053970|Name=TCONS_00053970|organism=Clytia hemisphaerica|type=transcript|length=2910bpRun BLAST on NCBI protein sequence of TCONS_00053970-protein >TCONS_00053970-protein ID=TCONS_00053970-protein|Name=TCONS_00053970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp MGQVLLESLTTKQICLFGATLFLFSTAFFVIGGTKGADPASANVHIANLFRun BLAST on NCBI transcript from alignment at scaffold_237:282761..307027- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053970 ID=TCONS_00053970|Name=TCONS_00053970|organism=Clytia hemisphaerica|type=transcript|length=24267bp|location=Sequence derived from alignment at scaffold_237:282761..307027- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_237:282761..307027- >TCONS_00053970 ID=TCONS_00053970|Name=TCONS_00053970|organism=Clytia hemisphaerica|type=CDS|length=26145bp|location=Sequence derived from alignment at scaffold_237:282761..307027- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053970 vs. Swiss-Prot (Human)
Match: WLS (Protein wntless homolog OS=Homo sapiens GN=WLS PE=1 SV=2) HSP 1 Score: 311.612 bits (797), Expect = 4.087e-94 Identity = 193/537 (35.94%), Postives = 299/537 (55.68%), Query Frame = 1
Query: 34 MGQVLLESLTTKQICLFGATLFLFSTAFFVIGGTKGADPASANVHIANLFHQKDVTAFGDDNRWEFYRVAKGPMRNPTAFEGSIFELMQKNPLSASTN-LIFSSKIPHPGAKMHPAYQFMLVIMNIRVDYMQQGMGRAMNIDCDMEFNAKLAYSD--VEDPTEEKHWTFLQRVHNQSRPLICTFSGMQSREDGEEKTPEGKQKYQQWNHYTCQDQHFFELGSVPHKHYLVNVHLPGDGQNKECLAGGRHFLSGMDFVEIHQNGGYTISLFVSKTVMFPFIIGALLFFVRRIKRESRQWLLLERCILWLGSATSILLLPIDWFTLVTDMPYMLFFSDLRQGFFYACLLVFWCLFAGEHILDQEERNQLSSYKYEIGSIVIGCVSLFLFDTVERGVQMKNPFHTIWKRDSGEKXXXXXXXXXXXXXXXYCLFFMRLLYFVRKNINMKSAALPAMQTERRLFYENKIYRFRVLLYATLSTVVITIICFIMDQVNETTWKFQDNSMNDYIIVSSAMHFGVFGMWGTYVFAVLILYSPDGKS 1635
M ++E+++TK++C+ G L +F F++GG P +A +++ K V A + ++ +++ V GP I ++ + P N ++FS IP P +M P +QFML I+ + + + R + ++ + LAY D + TE H +RV R L CTF+ KTPE + +Y Y C F E+GSV HK YL+N+ LP + + K + G + + V IHQNGG+T F KT + P I ++++ RRI SR +LLE+ I LG + + + +P++WF++ D +ML F D+RQG FYA LL FW +F GEH++DQ ERN ++ Y ++G I +G LF+FD ERGVQ+ NPF++IW D G + A AFI +A I +Y LF +++ V +NI+ K ++LPAM RRL YE I+RF+ L+ TL+ +T+I FI+ QV E WK+ ++ V+SA G++GMW YVFA++ LY+P K+
Sbjct: 1 MAGAIIENMSTKKLCIVGGILLVFQIIAFLVGGLIAPGPTTAVSYMS----VKCVDARKNHHKTKWF-VPWGPNHC-----DKIRDIEEAIPREIEANDIVFSVHIPLPHMEMSPWFQFMLFILQLDIAFKLNNQIRE---NAEVSMDVSLAYRDDAFAEWTEMAH----ERV---PRKLKCTFT--------SPKTPEHEGRY-----YECDVLPFMEIGSVAHKFYLLNIRLPVNEKKKINVGIGE--IKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDIGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQ----VNSAFFTGIYGMWNLYVFALMFLYAPSHKN 498 The following BLAST results are available for this feature:
BLAST of TCONS_00053970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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