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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053979 ID=TCONS_00053979|Name=TCONS_00053979|organism=Clytia hemisphaerica|type=transcript|length=1236bp
CGCCGAGAATCtaaacaaaaatggcggatgCTGTAAACTACTTGTATTGA
TGATGGAAAATTCTGAAGCCTCAAAGGATCAAGATCAAAATGTTCAAAGT
AAAATTATACATAAAAAGAGAAGAGACACAAAAGAAGTGAGGCTGGCAAA
AAGAAACAGAATGCCAAAACCAAAGTCAGACAAAAAGTCAGCAAAGCAAA
ATTCAAAGCGAAATTGGAGCTTGGCAAAAAGAATGATACTATCACAAAAT
TGCAGGAGagattaatgaaattttgccgcaAAACACTGCCAAACTTATCC
TCTGTCCGCACAAAAACAGTCATTGCAACAAATGTTAAGAGCCATATAAA
TACTACGAACTCTAGGGATTTCATAATACGAAAACTGGAAGGAATTCCAA
AAGTGAATCCAAATGATTTTGACTTCATTGATTACAATGTTGGATCTGGA
GTTTTTGGGTCTGTGAAGCTTGGGCGAATAAAAACTTTGAACTCCACAAT
TGCAGCCAAAGTGTTGGATGAAAAGACATCAAGTAAAAGTCTTCTGGCTG
AGGTTGTTACTCTTCTTACGTTATCTGGAAGTCAATATTTTCCCTTTTGT
TATGGGTTACTGGATGATACCGATAAACCTAAGGAACCATTAAATAAATG
TATCCTTATGGAGTTTTTAGGCCAAGTTAATGGAGATATGTATTCCCCTT
ATCCAACCTTGGCAAAGATGGCATCTTCACGGTTGTTAAATCACACAAAT
ATAAGACATATTTTCTCCTTAATTCTTGAAGGTGTTCAATTTCTCCACTT
GAAAGGTATTTTGCATAATGATATAAAGGCTGACAATATTGTAGTATGCA
AGGAACGTGTTGTTCTTATTGATTTTGGCAAAGCAACAATGATAAAATGT
CCAGTGACATATAATATCAAGAAGGCAGACCAAGTGACTTATAACCTAAT
ACCACAGACATCTGGCACATGAATTGCGcaacaaaacaaattcaaaacaa
acaaaacttacAGACATTTATTCCATCGGTTATATGTTCAAACACGTGGC
AGCTACTCTATCGTACAAGCCCCTCATTGAACTAGGTAGGCACATGAAGG
TGCATAGAATCGGCATTGATTTTTTTGAGTTTAGAGTAGTACTGATACAT
TTATGTAATTGGGGAGGGGTACTTGGTAAAAAGGGGTATGACAGGGGATG
TTTCACTGGTCAGGTTACCTTCCTTCATAGTCCCAG Run BLAST on NCBI transcript from alignment at scaffold_237:404349..406366- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053979 ID=TCONS_00053979|Name=TCONS_00053979|organism=Clytia hemisphaerica|type=transcript|length=2018bp|location=Sequence derived from alignment at scaffold_237:404349..406366- (Clytia hemisphaerica)
CGCCGAGAATCTAAACAAAAATGGCGGATGCTGTAAACTACTTGTATTGA
TGATGGAAAATTCTGAAGCCTCAAAGGATCAAGATCAAAATGTTCAAAGT
AAAATTATACATAAAAAGAGGTAGGTTATTTCGAAATTATAGGATAAAAT
ACTTCATTGATATATTCCTTCGATTCTATATTCCTCAAAATTCCCCTTAC
AGTAAAAAGGGGAAAATGTATGGCTATTTTCTTATTTCTGTTTTTGAGCG
AGTCGTCACCTTCATAACACATAGCTTTACTGATAGTTGTTCAACCACGG
CAGAACACAACATGTATGTCAGTGCATTAAGAAAGTTTGTGTGCAGAGGG
CCAAACACTCCAGTTGTTTTTTTTTAACTTTGGCAGGCCCATTCAGAGCA
TTTTGGCACCCATTTCTATGCTGCTATGACCCCTTCATTATTGTCCGGTG
TTCAAAGTATTCGATCTTGACACCGAACATTGGCACCAGACATTTGGCAC
CAGACATTTGGCACCGGACATTTTCTGTGTCCAGTGTATAGGCGTCCCTT
TCTCTCATTTACCCCACAAGTACCACCATTAATACTACAATATATTTGAA
GCCTGGATGGCGTCTCAGTTGCAGAGATTTCATCTAATTTGTGATTGTTA
AATGCTGAGAGATCTTATCTTAGAAGTTAAAATGCTACTTTGTTCTCGGC
TGTACAATCACACCAGACATTTTGTCACACACCAGACTTTTAGATGTCTG
GTGCGTCCTAATAAAGACAAAATTTGCTTTTGCCACTAAAATTCCTGATT
GAATATAGTTGGACAGAATTACATATTTATATATTTTATTGTTTATTATA
TTAAAATTCTTATTTCCCAACATTAAAACATTTTTCTTGTGTTTTCAGAA
AGAAGAGACACAAAAGAAGTGAGGCTGGCAAAAAGAAACAGAATGCCAAA
ACCAAAGTCAGACAAAAAGTCAGCAAAGCAAAATTCAAAGCGAAATTGGA
GCTTGGCAAAAAGAATGATACTATCACAAAATTGCAGGAGAGATTAATGA
AATTTTGCCGCAAAACACTGCCAAACTTATCCTCTGTCCGCACAAAAACA
GTCATTGCAACAAATGTTAAGAGCCATATAAATACTACGAACTCTAGGGA
TTTCATAATACGAAAACTGGAAGGAATTCCAAAAGTGAATCCAAATGATT
TTGACTTCATTGATTACAATGTTGGATCTGGAGTTTTTGGGTCTGTGAAG
CTTGGGCGAATAAAAACTTTGAACTCCACAATTGCAGCCAAAGTGTTGGA
TGAAAAGACATCAAGTAAAAGTCTTCTGGCTGAGGTTGTTACTCTTCTTA
CGTTATCTGGAAGTCAATATTTTCCCTTTTGTTATGGGTTACTGGATGAT
ACCGATAAACCTAAGGAACCATTAAATAAATGTATCCTTATGGAGTTTTT
AGGCCAAGTTAATGGAGATATGTATTCCCCTTATCCAACCTTGGCAAAGA
TGGCATCTTCACGGTTGTTAAATCACACAAATATAAGACATATTTTCTCC
TTAATTCTTGAAGGTGTTCAATTTCTCCACTTGAAAGGTATTTTGCATAA
TGATATAAAGGCTGACAATATTGTAGTATGCAAGGAACGTGTTGTTCTTA
TTGATTTTGGCAAAGCAACAATGATAAAATGTCCAGTGACATATAATATC
AAGAAGGCAGACCAAGTGACTTATAACCTAATACCACAGACATCTGGCAC
ATGAATTGCGCAACAAAACAAATTCAAAACAAACAAAACTTACAGACATT
TATTCCATCGGTTATATGTTCAAACACGTGGCAGCTACTCTATCGTACAA
GCCCCTCATTGAACTAGGTAGGCACATGAAGGTGCATAGAATCGGCATTG
ATTTTTTTGAGTTTAGAGTAGTACTGATACATTTATGTAATTGGGGAGGG
GTACTTGGTAAAAAGGGGTATGACAGGGGATGTTTCACTGGTCAGGTTAC
CTTCCTTCATAGTCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053979-exon-scaffold_237-1575043694:406247..406366 | TCONS_00053979-exon-scaffold_237-1575043694:406247..406366 | Clytia hemisphaerica | exon |
| TCONS_00053979-exon-scaffold_237-1575043694:404349..405464 | TCONS_00053979-exon-scaffold_237-1575043694:404349..405464 | Clytia hemisphaerica | exon |
| TCONS_00053979-exon-scaffold_237-1510915933:406247..406366 | TCONS_00053979-exon-scaffold_237-1510915933:406247..406366 | Clytia hemisphaerica | exon |
| TCONS_00053979-exon-scaffold_237-1510915933:404349..405464 | TCONS_00053979-exon-scaffold_237-1510915933:404349..405464 | Clytia hemisphaerica | exon |
| TCONS_00053979-exon-scaffold_237-1491911889:406247..406366 | TCONS_00053979-exon-scaffold_237-1491911889:406247..406366 | Clytia hemisphaerica | exon |
| TCONS_00053979-exon-scaffold_237-1491911889:404349..405464 | TCONS_00053979-exon-scaffold_237-1491911889:404349..405464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:404349..406366 - |
Blast
The following BLAST results are available for this feature:
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