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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053985 ID=TCONS_00053985|Name=TCONS_00053985|organism=Clytia hemisphaerica|type=transcript|length=287bp
CTCAGATAGTTGCTTTTGGTTTCCTCTTGAACATTATGATATTGTTAATT
TTGAGCTGCTAAAAGTAATCTAGTATCGAAAGAATGGGTCATCTCCAGAA
AAACTATCGTTATTCGTCGTCTataaactttgcatattcaactctgtttg
aCGTTGTTCCTTTCCATCGATATCAACAATCTTAAGtgaaataaagaaca
aagaccagaaagcagagtgatttttgatacacataagaaacataatattt
tcttgaataaaaaaagcCACAGCTTTTTAAATTCCAT Run BLAST on NCBI transcript from alignment at scaffold_237:503277..505672- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053985 ID=TCONS_00053985|Name=TCONS_00053985|organism=Clytia hemisphaerica|type=transcript|length=2396bp|location=Sequence derived from alignment at scaffold_237:503277..505672- (Clytia hemisphaerica)
CTCAGATAGGTGCTTTTGGTTTCCTCTTGAACATTATGGTATTGTTAATT
TTGAGCTTCTAAAAGTACTCTAGTATCGAAAGAATGGGTCATCTCCAGAG
AAACTATCGTTATTCGTCGTCTATAAACTTTGCATATTCAACTCTGTTTG
ACGTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TCCATCGATATCAATAATCTTAAATGAAATAAAGAACAAAGGCCAGAAAG
CAGAGTGATTTTTGATAAACATAAGAAACATAATATTTTCTTGAATAAAA
AAGCCACAGCTTTTTAAATTCCATTTATCCTACCACAAACAATAAGGTTT
ATCATTTGAGAGCATCATTTTTACAAAAGGAGATTTTTACAAGAATAAGA
AGCATCCCTTTTCAAAAATTATAGCTTGAATAATGCAAACTTTTTATTGG
AATGTTAAAAGCCAATATCATTGAATTATGGCATGTCGTTAAGTCCAGGG
CCTCATAAACACGACGTTCGTTGAGTTGCTCTTAGAATGTAACACATTGC
NNNNNNNNNNNNNNNNNAGTCCAGGGCCTCATAAACACGACGTTCGTTGA
GTTGCTCTTAGAATGTAACACATTGCTTTTGGAAGATTGTTTAATGGATT
ATAAAAGATCATTTTCTTATTTAAATAAGAAAGAATACGTTTCCACGGTT
CGTACGTTGAACATGGGAAATATGAAACAATCAATCAAAATTAGCACCCC
TTGCATCGACAACATACCATATCTATCCTTTCAAAAAGTGATAATTCTTT
GTCAAAGAATGATGCTCGCTTTAGAATTTGTGTAGGAAATTTTAAAGTGT
ATGCAGTTGCCTTTCTCATACAGATTTGAAAAAGTGTANCTCGCTTTAGA
ATTTGTGTAGGAAATTTTAAATCAAGTGTATGCAGTTGCCTTTCTCATAC
AGATTTGAAAAAGTGTAAGGTTTTTGACTTCGTGCCAAAAAAAGAACTTG
TTTTAAATGAAACAAAACTGTCAAATATACGAAAACATACCTTCTCAGAT
AGTTGCTTTTGGTTTCCTCTTGAACATTATGACATTGTTAATATTGAGCT
GCTAAAAGTACTCTAGTATCGAAAGAATGGGTCATCTCCAGAGAAACTAT
CGTTATTCGTCGTCTATAAACTTTGCATATTCAACTCTGTTTGACGTTGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTAAATGAAATAAAG
AACAAAGACCAGAAAGCAGAGTGATTTTTGATAAACATAAGAAACATAAT
ATTTTCTTGAATAAAAAAAGCCACAGCTTTTTGAATTCCATTTATCCTAC
CACAAACAATAAGGTTTATCATTTGAGAGCATCATTTTTACAAATGAAGG
TTTTTACAAGAATAAGAAGCATCCCTTTTCAAAAATTATAGCTTGAATAG
TGCAAACTTTTCATTGGAATGTTAAAAGCCAATATCATTGAATAATGGCA
TGTCGTTAAGTCCAGGGCCTCATAAACACGACGTTCGTTGAGTTGCTCTT
AGAATGTAACACATTGCTTTTGGAAGATTGTTTAATGGATTATAAAAGAT
CATTTTCTTATTTGAGTAAGAAAGAATACGTTTCCACGGTTCGTACGTTG
AACATGGGAAATATGAAACAATCAACCAAAATTAGCACCCCTTGCATCGA
CAACATACCATATCTATCCTTTCAAAAAGTGATACTTTTTTGTCAAAGAA
TGATGCTCGCTTTAGAATTTGTGTAGGAAATTTTAAATCAAGTGTATGCA
GTTGCCTTTCTCATACAGATTTGAAAAACTGTAAAGTTTTTGACTTGGTG
CCAAAAAAAGAGCTTGTTTTAAATGAAACAAAACTGTCAAATATACGAAA
GCATACCTTTTCAGATAGTTGCTTTTGGTTTCCTCTTGAACATTATGATA
TTGTTAATTTTGAGCTGCTAAAAGTAATCTAGTATCGAAAGAATGGGTCA
TCTCCAGAAAAACTATCGTTATTCGTCGTCTATAAACTTTGCATATTCAA
CTCTGTTTGACGTTGTTCCTTTCCATCGATATCAACAATCTTAAGTGAAA
TAAAGAACAAAGACCAGAAAGCAGAGTGATTTTTGATACACATAAGAAAC
ATAATATTTTCTTGAATAAAAAAAGCCACAGCTTTTTAAATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053985-exon-scaffold_237-1575043694:505664..505672 | TCONS_00053985-exon-scaffold_237-1575043694:505664..505672 | Clytia hemisphaerica | exon |
| TCONS_00053985-exon-scaffold_237-1575043694:503277..503554 | TCONS_00053985-exon-scaffold_237-1575043694:503277..503554 | Clytia hemisphaerica | exon |
| TCONS_00053985-exon-scaffold_237-1510915933:505664..505672 | TCONS_00053985-exon-scaffold_237-1510915933:505664..505672 | Clytia hemisphaerica | exon |
| TCONS_00053985-exon-scaffold_237-1510915933:503277..503554 | TCONS_00053985-exon-scaffold_237-1510915933:503277..503554 | Clytia hemisphaerica | exon |
| TCONS_00053985-exon-scaffold_237-1491911889:505664..505672 | TCONS_00053985-exon-scaffold_237-1491911889:505664..505672 | Clytia hemisphaerica | exon |
| TCONS_00053985-exon-scaffold_237-1491911889:503277..503554 | TCONS_00053985-exon-scaffold_237-1491911889:503277..503554 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:503277..505672 - |
Blast
The following BLAST results are available for this feature:
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