TCONS_00053995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053995
Unique NameTCONS_00053995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053995 ID=TCONS_00053995|Name=TCONS_00053995|organism=Clytia hemisphaerica|type=transcript|length=581bp
CGAATACACGTTTGCCCCCCAAGTATGTTGTGTGGATGGTATTTAGATGG
TGTTTTTATGTTGTGTGGATGGTATTTAGATGGTGTTTTTACGTTGTGTG
GATGATATTTAGATGGTGTTTTTATGTTGTGGGGATGGTATTTAGACGGT
GTTTTTATGTTGTGTGGATGATATTTAGATGGTGTTTTTATGTTGTGTGG
ATGGTATTTAGATGGTGTTTTTATGTTGTGTGGATGGTATTTAGATGGTG
TTTTTATGTTGTGTGGATGATATTTAGATGGTGTTTTTATGTTGTGTGGA
TGGTATTTAGATGGTGTTTTTATGTTGTGTGGATGGTATTTAGATGGTGT
TTTTAAGTTGTGTGGATGGTATTTAGATGGTGTTTTTATGTTGTGTGGAT
GGTATTTAGATGGTGTTTTTACGTTGTGTGGATGGTATTTAGATGGTGTT
TTATGTTGTGTGGATGGTATTTAGATGGTGTTTTTATGTTGTGTGGATGG
TATTTAGATGGTGTTTTTATGTTGTGTGGATGATATTTAGATGGTGTTTT
TATGTTGTGGGGATGGTATTTAGATGGTGTT
Run BLAST on NCBI

transcript from alignment at scaffold_237:190210..190790

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053995 ID=TCONS_00053995|Name=TCONS_00053995|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at scaffold_237:190210..190790 (Clytia hemisphaerica)
AACACCATCTAAATACCATCCCCACAACATAAAAACACCATCTAAATATC
ATCCACACAACATAAAAACACCATCTAAATACCATCCACACAACATAAAA
ACACCATCTAAATACCATCCACACAACATAAAACACCATCTAAATACCAT
CCACACAACGTAAAAACACCATCTAAATACCATCCACACAACATAAAAAC
ACCATCTAAATACCATCCACACAACTTAAAAACACCATCTAAATACCATC
CACACAACATAAAAACACCATCTAAATACCATCCACACAACATAAAAACA
CCATCTAAATATCATCCACACAACATAAAAACACCATCTAAATACCATCC
ACACAACATAAAAACACCATCTAAATACCATCCACACAACATAAAAACAC
CATCTAAATATCATCCACACAACATAAAAACACCGTCTAAATACCATCCC
CACAACATAAAAACACCATCTAAATATCATCCACACAACGTAAAAACACC
ATCTAAATACCATCCACACAACATAAAAACACCATCTAAATACCATCCAC
ACAACATACTTGGGGGGCAAACGTGTATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034080XLOC_034080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053995-exon-scaffold_237-1491911889:190210..190790TCONS_00053995-exon-scaffold_237-1491911889:190210..190790Clytia hemisphaericaexon
TCONS_00053995-exon-scaffold_237-1510915933:190210..190790TCONS_00053995-exon-scaffold_237-1510915933:190210..190790Clytia hemisphaericaexon
TCONS_00053995-exon-scaffold_237-1575043694:190210..190790TCONS_00053995-exon-scaffold_237-1575043694:190210..190790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:190210..190790 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0953703	0	0.215966	0.211289	0	0	0	0	0	0	0	0	0.0634278	0	0	0.116232	0	0	0	0	0.184419	0	0	0	0.409579	0.18277	0	0	0.105854	0.215696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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