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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054002 ID=TCONS_00054002|Name=TCONS_00054002|organism=Clytia hemisphaerica|type=transcript|length=944bp
tttcacgtctttacgaatcaaaacaaacttttcattgACATATTGTTTTC
GATTCTTCATCAAACCTGACATATCTTCATACCACAATTTGTAGTTTTCA
CCGATAAAGTCTCCTCTCCCTGTATTGTAattcaacaaaaacttttcagc
tcCTTCGAAAAATCGGTCAGGTATTTTGTCCAAAGGCTTCTGGACTTTTT
CTTGGACGACTTTTTCTGCACCTTCAATTTCTTGTTTTTGATTAACTTCT
GTTTTCAAATGTTCGAAATCATTTCTCAGGGCTTGCAATTCATTTTCCAG
CTTGCCTTTTTGAGTTTGGGTTTGATCTTTCAACTCAACTTTCAAGCCTT
CTATTCCATTTTCAAGGGCTTGAACTTCCTTTTctaatttaccattttga
gCTTTCAAGCCGCCCATCTCATTTTCGAGGGCTTGAAAGTCATTTTCCAA
TTTGCCATTTTGAGCTTTCAAGCCGCCCATTTCCTGTTTAAGGTCTTCGA
ATTCATTTTTCAGATCAGCTTCAGCGACTGTTTTCTCGAGAGCTTGATTC
TGAATTTTGAGTCTTTCGATTTCTTTTACCATTTgacttccattattttt
attttcctgCTGCGCCTTCAATTTAGCAATTTCATTGTCATGTTTGAGTG
TTTGTATCTCGTTCTTGAGAGCTTGGATTTCTTCTTTTAGAGTTTTTTCG
GTCAAGCTTACAACGACCTTCTCTTCGTTTTTCTCCTGTTTTGCCTTCAA
TTTAGCAATTTCATTGCCATGTTCGAGTGTTTGTATCTCGTTCTGCATTT
CAagagttttgattttattttccaaagtctctttttcatttttcgctCTC
AATTCAGCATTTTCTTGCTTCAGTTTTCGGTTTTCTTCGTGAATCGTTCG
TTCACGATCAACTGAGCTGTGTGCttcattcatttttattttgt Run BLAST on NCBI protein sequence of TCONS_00054002-protein >TCONS_00054002-protein ID=TCONS_00054002-protein|Name=TCONS_00054002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
KIKMNEAHSSVDRERTIHEENRKLKQENAELRAKNEKETLENKIKTLEMQ
NEIQTLEHGNEIAKLKAKQEKNEEKVVVSLTEKTLKEEIQALKNEIQTLK
HDNEIAKLKAQQENKNNGSQMVKEIERLKIQNQALEKTVAEADLKNEFED
LKQEMGGLKAQNGKLENDFQALENEMGGLKAQNGKLEKEVQALENGIEGL
KVELKDQTQTQKGKLENELQALRNDFEHLKTEVNQKQEIEGAEKVVQEKV
QKPLDKIPDRFFEGAEKFLLNYNTGRGDFIGENYKLWYEDMSGLMKNRKQ
YVNEKFVLIRKDVK Run BLAST on NCBI transcript from alignment at scaffold_237:273168..274111 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054002 ID=TCONS_00054002|Name=TCONS_00054002|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at scaffold_237:273168..274111 (Clytia hemisphaerica)
acaaaataaaaatgaatgaaGCACACAGCTCAGTTGATCGTGAACGAACG
ATTCACGAAGAAAACCGAAAACTGAAGCAAGAAAATGCTGAATTGAGagc
gaaaaatgaaaaagagactttggaaaataaaatcaaaactctTGAAATGC
AGAACGAGATACAAACACTCGAACATGGCAATGAAATTGCTAAATTGAAG
GCAAAACAGGAGAAAAACGAAGAGAAGGTCGTTGTAAGCTTGACCGAAAA
AACTCTAAAAGAAGAAATCCAAGCTCTCAAGAACGAGATACAAACACTCA
AACATGACAATGAAATTGCTAAATTGAAGGCGCAGcaggaaaataaaaat
aatggaagtcAAATGGTAAAAGAAATCGAAAGACTCAAAATTCAGAATCA
AGCTCTCGAGAAAACAGTCGCTGAAGCTGATCTGAAAAATGAATTCGAAG
ACCTTAAACAGGAAATGGGCGGCTTGAAAGCTCAAAATGGCAAATTGGAA
AATGACTTTCAAGCCCTCGAAAATGAGATGGGCGGCTTGAAAGctcaaaa
tggtaaattagAAAAGGAAGTTCAAGCCCTTGAAAATGGAATAGAAGGCT
TGAAAGTTGAGTTGAAAGATCAAACCCAAACTCAAAAAGGCAAGCTGGAA
AATGAATTGCAAGCCCTGAGAAATGATTTCGAACATTTGAAAACAGAAGT
TAATCAAAAACAAGAAATTGAAGGTGCAGAAAAAGTCGTCCAAGAAAAAG
TCCAGAAGCCTTTGGACAAAATACCTGACCGATTTTTCGAAGgagctgaa
aagtttttgttgaatTACAATACAGGGAGAGGAGACTTTATCGGTGAAAA
CTACAAATTGTGGTATGAAGATATGTCAGGTTTGATGAAGAATCGAAAAC
AATATGTcaatgaaaagtttgttttgattcgtaaagacgtgaaa Coding sequence (CDS) from alignment at scaffold_237:273168..274111 >TCONS_00054002 ID=TCONS_00054002|Name=TCONS_00054002|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_237:273168..274111 (Clytia hemisphaerica)
aaaataaaaatgaatgaaGCACACAGCTCAGTTGATCGTGAACGAACGAT
TCACGAAGAAAACCGAAAACTGAAGCAAGAAAATGCTGAATTGAGagcga
aaaatgaaaaagagactttggaaaataaaatcaaaactctTGAAATGCAG
AACGAGATACAAACACTCGAACATGGCAATGAAATTGCTAAATTGAAGGC
AAAACAGGAGAAAAACGAAGAGAAGGTCGTTGTAAGCTTGACCGAAAAAA
CTCTAAAAGAAGAAATCCAAGCTCTCAAGAACGAGATACAAACACTCAAA
CATGACAATGAAATTGCTAAATTGAAGGCGCAGcaggaaaataaaaataa
tggaagtcAAATGGTAAAAGAAATCGAAAGACTCAAAATTCAGAATCAAG
CTCTCGAGAAAACAGTCGCTGAAGCTGATCTGAAAAATGAATTCGAAGAC
CTTAAACAGGAAATGGGCGGCTTGAAAGCTCAAAATGGCAAATTGGAAAA
TGACTTTCAAGCCCTCGAAAATGAGATGGGCGGCTTGAAAGctcaaaatg
gtaaattagAAAAGGAAGTTCAAGCCCTTGAAAATGGAATAGAAGGCTTG
AAAGTTGAGTTGAAAGATCAAACCCAAACTCAAAAAGGCAAGCTGGAAAA
TGAATTGCAAGCCCTGAGAAATGATTTCGAACATTTGAAAACAGAAGTTA
ATCAAAAACAAGAAATTGAAGGTGCAGAAAAAGTCGTCCAAGAAAAAGTC
CAGAAGCCTTTGGACAAAATACCTGACCGATTTTTCGAAGgagctgaaaa
gtttttgttgaatTACAATACAGGGAGAGGAGACTTTATCGGTGAAAACT
ACAAATTGTGGTATGAAGATATGTCAGGTTTGATGAAGAATCGAAAACAA
TATGTcaatgaaaagtttgttttgattcgtaaagacgtgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054002-exon-scaffold_237-1491911889:273168..274111 | TCONS_00054002-exon-scaffold_237-1491911889:273168..274111 | Clytia hemisphaerica | exon |
| TCONS_00054002-exon-scaffold_237-1510915933:273168..274111 | TCONS_00054002-exon-scaffold_237-1510915933:273168..274111 | Clytia hemisphaerica | exon |
| TCONS_00054002-exon-scaffold_237-1575043694:273168..274111 | TCONS_00054002-exon-scaffold_237-1575043694:273168..274111 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:273168..274111 . |
Blast
The following BLAST results are available for this feature:
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