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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054007 ID=TCONS_00054007|Name=TCONS_00054007|organism=Clytia hemisphaerica|type=transcript|length=1224bp
TTCTATCAAGTTGCACTTCATTTTTTTTACCATACACCCTTATTATTCCA
GGATGTGAacactttgaaaatttatgatttgctttatatttttagattca
aaaaTTCAAGACATCATGTCAGCTTTACAACTTTAAGACTTTCTTGAAAT
GACTAATGGACAGTTCGAAGCTTACTTGAAAAGACGTGACATGAGCAGCA
CTGGAAATCATGATACCCTTGCTTCACGAGCCTTGAATGCACATGATCAA
AATATTCCTGTGAAACAGCTACCTGAAAACTACCCATCAAATATCGAGAG
GTATCTGACGACAGAAAGGAATTGTATATCAATACCATTAGAAAGGAATT
CCCAATGGCTGTGATCAACAATTGTTTTACTCCTCCACCTAACCTTGACA
TGCCACCTCCACTTCCAGTCATTACAGAAAAAATTGTGAGTTCACATCAT
GATCATGACTTTTTTAAGATACAAGaattcaactcaaaattatctttcaa
cGACTCTCAATTAAATGAATTAGAAAAAGCAACACGATCCCAATCAAATT
CTAACAGCTGGTGGGAACAGCGTAAAGGAAGGATTACAGCatccaaattt
tacgaaattaattcaaaaataaaatagatgGCAAGgtcaaaaacaacgaa
aatgaGTAATATGGTTCTGTCCCTTTGTGAACCTAAAAAAGTTAGTGCAG
AACCACTAACTTGGGGCAGAACTAAAGAGAAAATTGCTTTAGAGGCATTC
ATGAAATTTGAGGGTATTAAGCATAAACTTTCTTCTGGTTTACACGTTTA
CAAAAGCAATCCGTATCTTGGTGCCACTCCAGACGGCATATTTACATGCA
AATGTAAGGAATGCGTGGAAGTGAAATGTCCATACAGTCTGAGAGAAAAA
TCCATCATTGAAGGTGAAACTTATAGAGAACTAGGTTATTTAGAATTGAA
TAACAACGAACTAAGACTGAAGAAGAACCATTCTTACGACGCCCAAGTGA
ATGGTCAAATGGCAATAACTGGTACACAATATTCGTTTTTTGTGGTATGG
ACACCAAAAGGACCACCTCTCATTCTCAAAGTTGCTTTTGACCAAGAGTA
TTGGTATGATATGCTACCCAACTTGAGTTTATTCTTTAAATCGTATATTT
GTCCATATTTGCTAtgcatcaaaaagatttttcattgtCCTGTGTGCTCA
GATATTTGTCTTAGTGAAGAggaa Run BLAST on NCBI protein sequence of TCONS_00054007-protein >TCONS_00054007-protein ID=TCONS_00054007-protein|Name=TCONS_00054007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MARSKTTKMSNMVLSLCEPKKVSAEPLTWGRTKEKIALEAFMKFEGIKHK
LSSGLHVYKSNPYLGATPDGIFTCKCKECVEVKCPYSLREKSIIEGETYR
ELGYLELNNNELRLKKNHSYDAQVNGQMAITGTQYSFFVVWTPKGPPLIL
KVAFDQEYWYDMLPNLSLFFKSYICPYLLCIKKIFHCPVCSDICLSEEE Run BLAST on NCBI transcript from alignment at scaffold_237:383245..384468 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054007 ID=TCONS_00054007|Name=TCONS_00054007|organism=Clytia hemisphaerica|type=transcript|length=1224bp|location=Sequence derived from alignment at scaffold_237:383245..384468 (Clytia hemisphaerica)
ttccTCTTCACTAAGACAAATATCTGAGCACACAGGacaatgaaaaatct
ttttgatgcaTAGCAAATATGGACAAATATACGATTTAAAGAATAAACTC
AAGTTGGGTAGCATATCATACCAATACTCTTGGTCAAAAGCAACTTTGAG
AATGAGAGGTGGTCCTTTTGGTGTCCATACCACAAAAAACGAATATTGTG
TACCAGTTATTGCCATTTGACCATTCACTTGGGCGTCGTAAGAATGGTTC
TTCTTCAGTCTTAGTTCGTTGTTATTCAATTCTAAATAACCTAGTTCTCT
ATAAGTTTCACCTTCAATGATGGATTTTTCTCTCAGACTGTATGGACATT
TCACTTCCACGCATTCCTTACATTTGCATGTAAATATGCCGTCTGGAGTG
GCACCAAGATACGGATTGCTTTTGTAAACGTGTAAACCAGAAGAAAGTTT
ATGCTTAATACCCTCAAATTTCATGAATGCCTCTAAAGCAATTTTCTCTT
TAGTTCTGCCCCAAGTTAGTGGTTCTGCACTAACTTTTTTAGGTTCACAA
AGGGACAGAACCATATTACtcattttcgttgtttttgacCTTGCcatcta
ttttatttttgaattaatttcgtaaaatttggatGCTGTAATCCTTCCTT
TACGCTGTTCCCACCAGCTGTTAGAATTTGATTGGGATCGTGTTGCTTTT
TCTAATTCATTTAATTGAGAGTCgttgaaagataattttgagttgaattC
TTGTATCTTAAAAAAGTCATGATCATGATGTGAACTCACAATTTTTTCTG
TAATGACTGGAAGTGGAGGTGGCATGTCAAGGTTAGGTGGAGGAGTAAAA
CAATTGTTGATCACAGCCATTGGGAATTCCTTTCTAATGGTATTGATATA
CAATTCCTTTCTGTCGTCAGATACCTCTCGATATTTGATGGGTAGTTTTC
AGGTAGCTGTTTCACAGGAATATTTTGATCATGTGCATTCAAGGCTCGTG
AAGCAAGGGTATCATGATTTCCAGTGCTGCTCATGTCACGTCTTTTCAAG
TAAGCTTCGAACTGTCCATTAGTCATTTCAAGAAAGTCTTAAAGTTGTAA
AGCTGACATGATGTCTTGAAtttttgaatctaaaaatataaagcaaatca
taaattttcaaagtgtTCACATCCTGGAATAATAAGGGTGTATGGTAAAA
AAAATGAAGTGCAACTTGATAGAA Coding sequence (CDS) from alignment at scaffold_237:383245..384468 >TCONS_00054007 ID=TCONS_00054007|Name=TCONS_00054007|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_237:383245..384468 (Clytia hemisphaerica)
ttccTCTTCACTAAGACAAATATCTGAGCACACAGGacaatgaaaaatct
ttttgatgcaTAGCAAATATGGACAAATATACGATTTAAAGAATAAACTC
AAGTTGGGTAGCATATCATACCAATACTCTTGGTCAAAAGCAACTTTGAG
AATGAGAGGTGGTCCTTTTGGTGTCCATACCACAAAAAACGAATATTGTG
TACCAGTTATTGCCATTTGACCATTCACTTGGGCGTCGTAAGAATGGTTC
TTCTTCAGTCTTAGTTCGTTGTTATTCAATTCTAAATAACCTAGTTCTCT
ATAAGTTTCACCTTCAATGATGGATTTTTCTCTCAGACTGTATGGACATT
TCACTTCCACGCATTCCTTACATTTGCATGTAAATATGCCGTCTGGAGTG
GCACCAAGATACGGATTGCTTTTGTAAACGTGTAAACCAGAAGAAAGTTT
ATGCTTAATACCCTCAAATTTCATGAATGCCTCTAAAGCAATTTTCTCTT
TAGTTCTGCCCCAAGTTAGTGGTTCTGCACTAACTTTTTTAGGTTCACAA
AGGGACAGAACCATATTACtcattttcgttgtttttgacCTTGCcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054007-exon-scaffold_237-1491911889:383245..384468 | TCONS_00054007-exon-scaffold_237-1491911889:383245..384468 | Clytia hemisphaerica | exon |
| TCONS_00054007-exon-scaffold_237-1510915933:383245..384468 | TCONS_00054007-exon-scaffold_237-1510915933:383245..384468 | Clytia hemisphaerica | exon |
| TCONS_00054007-exon-scaffold_237-1575043694:383245..384468 | TCONS_00054007-exon-scaffold_237-1575043694:383245..384468 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:383245..384468 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004518 | nuclease activity |
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0004518 |
nuclease activity |
Blast
The following BLAST results are available for this feature:
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