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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054022 ID=TCONS_00054022|Name=TCONS_00054022|organism=Clytia hemisphaerica|type=transcript|length=2594bpRun BLAST on NCBI protein sequence of TCONS_00054022-protein >TCONS_00054022-protein ID=TCONS_00054022-protein|Name=TCONS_00054022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=629bp MSYPISLSVTGKPSPRTNHPANAGHSRTPMTANRSRNQKSNIFCLGSENLRun BLAST on NCBI transcript from alignment at scaffold_238:106423..124385+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054022 ID=TCONS_00054022|Name=TCONS_00054022|organism=Clytia hemisphaerica|type=transcript|length=17963bp|location=Sequence derived from alignment at scaffold_238:106423..124385+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_238:106423..124385+ >TCONS_00054022 ID=TCONS_00054022|Name=TCONS_00054022|organism=Clytia hemisphaerica|type=CDS|length=28350bp|location=Sequence derived from alignment at scaffold_238:106423..124385+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054022 vs. Swiss-Prot (Human)
Match: CAYP2 (Calcyphosin-2 OS=Homo sapiens GN=CAPS2 PE=2 SV=2) HSP 1 Score: 210.305 bits (534), Expect = 2.899e-58 Identity = 135/371 (36.39%), Postives = 200/371 (53.91%), Query Frame = 3
Query: 1089 ADNEKSKKGRS-----------KKQEFIEDAILQDQVSRMKLSE-------EKEANQRAYGGGPTQPFDSRMKRVDQLFNTKSMVTGTHEDLSNRFRFSARILSLNGRDALRELNGFFFIVDNTLTLYEFRQFG-SRANATPFIQRGQYSHISGFRKNRQYHLMDIGTGKNLTFDTKNQPSLSDGLKAKSXXXXXXXXXXXXXXXKKLLYHGCKT-SKEKEMVKRFVDDYMRAETNDSIVALKQLQAKMRHSLKTRGTKMMTSLFYHFKMVDKSGDGLLSKEEIKTTFQKFRVQVQEHEFNLIWKLIDENNDEFLDYGEFTRGFFGEMTEHRKKWVRKAFTRLDTSSSGVGEATNFYKFFCPSKHPSVIKG 2141
ADN K+ R+ KK++ + + ++ D +SR +S+ E++ + P R KR ++ T T LS++ +F RI+S NGRDA REL GFFF D +LT+YE+RQFG +R N PFIQ+ YSH G RK +QY L D G LTF + + SL + +K + + +RIT+ ++ KT S E+E DD + ETND +V K +Q ++ L RG +++T L +F+ +DK G+GLL K + K + F ++V E +F W ++++N + +DYGEF RG GEM E+RK +VRKAF +LD + SG N K +C KH VI G
Sbjct: 201 ADNSCDKQQRARKLDAEIVAAEKKKQIVAEQVMIDHLSRAVISDPEQNLAIEQKESDHILPDSKMTPLRFR-KRTLHETKIRTHSTLTENVLSHKLQFDGRIVSRNGRDACRELIGFFFTHDQSLTIYEYRQFGKNRTNVLPFIQKSIYSHQCGRRKGKQYRLGDFYVGATLTFLSSDHLSLPESIKENTLLKLRITNI------DQIALDSLKTASMEQE------DDIIIQETNDRLV-FKAIQDVLKEKLHKRGVRILTGLGKYFQQLDKEGNGLLDKADFKQALKVFHLEVSEKDFESAWLILNDNGNGKVDYGEFKRGIIGEMNEYRKSYVRKAFMKLDFNKSGSVPIINIRKCYCAKKHSQVISG 557 The following BLAST results are available for this feature:
BLAST of TCONS_00054022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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