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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054064 ID=TCONS_00054064|Name=TCONS_00054064|organism=Clytia hemisphaerica|type=transcript|length=506bp
GTACAATTACGTGATATTATGGGTTCATTTGCAATatcatatatttttat
tttgttcttcatTCGTTTCCATTCAGataattcCATCCTCGAGAAGTTCG
CACCGATTCCAGAGAAGGTCCCGGAatggaaaaaagaaatcattaaacga
aaaaatgaaaagctTTTGCAAGACGCAATCGACGAAGCAATAGCACAGAA
AGATCCATACGCTGGAGTTCCACAATGGAAGAAAGAACTTCTGATCAAGC
GAGATAATGAAAAAGCGCAGCATAAAGAACGACTTTCCGTTGAACAGAAA
GTAAAGGAGGAGGTTACCAAGAAATTTGAAACCAAACCAGAATGGAAAAA
AGATCTGATCTTAAAACGTCGTATTAGTCAAGAATCCCCACGACAAATGC
AAACTTGAAATTCGTTATaattattttgtgtttttagtCTTTGTGTGATG
TAAAATATGAGTTTACTTTGATTATTTCATTTAGGGACAATATACTTATG
TTTTCA Run BLAST on NCBI transcript from alignment at scaffold_239:43489..51793- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054064 ID=TCONS_00054064|Name=TCONS_00054064|organism=Clytia hemisphaerica|type=transcript|length=8305bp|location=Sequence derived from alignment at scaffold_239:43489..51793- (Clytia hemisphaerica)
GTACAATTACGTGATATTATGGGTTCATTTGCAATATCATATATTTTTAT
TTTGTTCTTCATTCGTTTCCATTCAGGTAAAGTCACATTTAATTTACCTT
TTCCCAAACAAGAAAAGCCTTAAGATTTGCACCGCATTTAGAATGACGGA
TTGAACTTAGCTCTTTCTTTGTTTTCTATCTAGCGTTTGCGTGAAAACGT
GGGTCACGCGTTTTGGATTGAAAATAAGTGGCTTCATTTCCCATGCACGG
GGCTTTGAAATCAAAGGTACTGAAAAGACCATCCCGAGATCGAGGTATGT
TGAGGTCATCAAGATAAAAAATAGATTCAATTATATGTTTCTTTTGTAGA
ACCTGTTGATTGTAAGAACATTGTCGTATCAAAGTCAAACGGCAGCGACA
CAAAGGGGTGCGGCTCAACAATACAATTTGCATGTAAAACATTACGGTAT
GCTGTTGAAATGGCTGAAGATAATGACGTCATCCTCTTGGATGGAAGTAA
CTCCACCATGAAATATGACTTCACCAATACAGTTATTGATAAAAACTTAT
CCTTAGCTGCGTTAGACACTGCAATATTACCTCTTCTTACAGCATCAATT
AAGGAAGGAGAGCGGAACTTCATTTTGACTCATACTGGGTATTTCAATGT
TAGTTATATGAACTTTTCAAGAAATTCTTACTCTTTCACTCCAACAGACC
CTTATTTTTCAGTTGACTTGACCTCTTATGGATCTAACAAACTTTTTATC
ACGGATTCGATCATACAGAAAGGAGCACCGATGTACAGAGTAAATAGCTG
GTATGTTGAAGGGTCTATTTATATTTTGAGGTGTATATTTCCTGATGACT
TCAAATGTTTTGTTCCTGATCATAGGTCGAAAAATCAAACGAGCACCAAG
GTTCAGGCTATCGTCAAGGATTCTTTATTTTCGTATCTTGGCGAGTCAGC
ATTCGATTGGTGTTTACATGCGTCAGTATTTTCTCTTATAAATTGTTCGA
TTGGGCTGAATAATTTTATCCATCACGGATTTGATACTGTAAACATCCAA
GAAACCACCGGCAGTATTTCGATTAAAGACACCCATGACTTAACCATTAT
AGATAGTGGCTTGATTATGAACTTGGAAAACATAAATCACGCTATAATAG
TTAACAATACGTTTATTATTCGCTATAATGTTTTTTGGATACCCTTGACT
TTCCAAAATGTTACCTCGTGTTTGATCAAAGACTCTATAATTGACATTCC
GTTTCCAAGAAAGGGGTGCCCGGTTGATAGTCTCCCTTCCTTCCAAATAC
ACTCAAGCGAAGTCACATTTGAAAGGTTGACATTTATAATGAATGAAAAA
TTGAAATACTTATTGGATATTAAAACCTTCAAATTTCCAGAAAAAAGTTG
GATCGATTTGTCATGCGAAAATAAACTTATTTTTGAAATAGGTCTTCCAG
CTGATCCTTCCGATATTCATATCTCACAGTTTGATTTTGGATGCCCGGTA
AATTATATTCCAAAGTATGTATGTTTTCCTCGTCAAAATCAGCAATATGT
ACTTTACTGTGATGCGATGATAAATAATCAATACACTCTCAACAGATCTG
AGCTCAGTTATACTATATTAAATGGGTATTATATTCAGTCTCCCCCTATT
TACCAATGCCCCCTTCAAGCAAGATGCGGGGAGGGAAGTATATTCAACTT
GGAGCCTTATTGGGGATATATCAACACAGAAAATGGATCTAAAGTTGATA
ACAGTCCATTGGAATTTGTAACTTGTCCAGAACATTTTTGCGGAAACATC
GAGTCATCGAATGCTATTGAAACATCTTGGCAATATTGCCAGGGAAAACG
TATTGGTCGACTTTGTGGTGATTGTCCCGAAAATTACATTGTTCCCGTAA
TCGGTTCGAAACAATGTCTCCTGATGACTGACTGTGATGATGGGAAAATG
TTTTGGATTTTGTGGCTGTTGCTTTGTCTCTTTATACTGACAGTGTATGG
ATTTCAACGAACAATAGCTAAAGTTATATGCTACTGTTTTGAAAAATATT
TCCGTAAAAAAAGAGTGCAACGACCGATACCGCGAGAGATTCAAATTGAA
AATGACGAAATTATTGAAGAAGAGAATAATATACCAAATAATTGTCACGG
TCCGCAAGAAAACGAGGAAGATAGAGTTTGCCAAACACCTCCACCACAGC
CTTTGGTACCTTTACCTCATGTTGACCATCAAAGGAATCAACAACAACAA
CTTGCAGACGATCATGTAGATGCGCATCAGCTTTTGGAAGAACATCAACA
AAAGAACTCTTTAAGTGGATGGTTTGTCATTTTTATCTCTTTCTACCAAA
CCATTTATATTATCCGACCCTCAAGAAACACAACCAGTTCATCGCAAATC
TTTTCGACAATCAATGATGTCTTTTTTACCCTTTTCACTGGAACTTTGGA
TATCGTCTCACCGAATATCACCATGTGTCCTTTACAGACACAAAATGCCG
ACCTCGTTGAATTCATCAAAATAAGCCCTTGGATTGCATGTATAAGTTTC
ACCATTTTCTTGATCATTATTTTGACATATGTGGTGAAATTCAAGAGAAG
ACAGCTTCACGGAAATGGCTATCAGAATCTTGAAGCTGCTGGTGAAAATG
GATGGCAAGAAAGAACACTTTCTCATCTTCAAAAAGGTGTCACTCAAATG
ATATTTATTGTTTACATTCCCATTAGTATGTTTTTGCTGCGTTTACTGAA
ATGTGTTGAAATAAATGGTGAGCATTATCAGTTCATTCAAGCCTCCAACC
AATGTTATTCCACGACTCAAATCGTTGCTTGGATCTTTCTCATTTTCTGG
TCAATCTTCTTTTGTCCAGCATTATACCTGGCAACGAGATTGCTGCAGAT
GAAAAAAATTGCGGTGAACGAGTTTGTGATTGTGTTGATTTTCCCGCTTC
AAATTGTTTGGTATTTAATTCGAATAGGCATGCGTAGAAATGACAACGAA
CAGGTAGTGAATGATGACAAAGAAAACATCTACAAAGTGATGAGCAACCC
TTTCAAAAGAAACGATGAGAACGTCCCCATTCAGTGGCTACCAATAATTT
TATTCAGAGCTTTTATTTTGGCCATCATTTCAACCTTTGTGTTGAATACC
GAGAAACGAGTTTTGGCAAATACCGCTTTTAGTGTTGTCCTTATGATCAA
AGATTCCGTTGTTTGGCCATACCGGAGTGTTCGTTTGAATACTCTGAATA
TTATGTGTTGGTGTGGGTTGTTTTTGGAGATTCTGAGCTCGTTTTTTTTG
GTCATTTGCTAATCTTTCATTGGTGAAAGAATTTTCTGGTCTTTTCGTGG
GTTTTGAGTTTGTTTTATTGCTAGCGCCAATCTTAGTTTTGGTTTTTGTG
AACCTCTATGGATTATTATTTGCAAAGTACCTTAAAAGATTTTTTAATAA
GCAGGACTAATTTGCTTAAATTATTCTAACTTTTTTATTGATTTTTCTTA
TGGATTATCCAATGAACTTACATTCTTTCTACTTTCAAGCTCGTTTATGG
AAATATTTGATCACCCAATGAAACTATTTTAGTTTGACATTTGAACATCC
TTGTCTCAATGCTCCACTGGAACTCCTCCCCCCAGTATATCAAAAATCCA
ATTGGGATGAAGCTATTGTTTTTTAACTCGATTTTCTCCATTCAAATTTC
AATAAAAATAAAAACATATATGGCACTTTCCTTTTCCGTGGAAATTTCGA
GGTGTTTTCCACCGGAGATAATTTTTTCAAGTGGGGTGGAGTCGCCCTGT
GACAAAAGGGTGTACACAAATATACATTAACTTTTACGTTCACTTTATTA
TATAACATAGTTTGTATATTATAAAACGTAATATGTTGCAAGGCGGATAG
AGTCTGTGTTTACGGACGATATCAACTTGGAGTTTTTCTTGATTTTACTT
TTGTCCTGACCAAAATCCAAAATTTCCGCTTTTCTGCCAAGTTGATAAAG
TCTAAGACAAGAGCTACCCCCGAAAAAATCCCCGTCTTCACGTTTGTTCC
TCTTAGATGAAACTCGTCTTAGACTATAGCATAGTCTAGGGTGTATTTGA
ATCTGATTAAGTTTGTGTATTGCACAACAATCATTTTATCTTTGAGATTT
TAGAAAAATTTGATGATTTTTCAAGAACTAAATATGTAATGATCCTCAAT
AGAATTTCTTAATCAATTCAATTTCTTTCTTTTTCGTATTAATATTAATT
GACATACAAAAAAGAATATATTTATAGGAATCCATTTTTTATATCAAATA
TCAAAAACAATGCAAATTTAATATTCTTGACCACAAGTTTGAAGACCGAA
GGATTTTTGGAAAGAATTTTTATTAGAACATTTTTATCAGTATCGAATCC
TTTCTGCAAGTCTGTAAAAAATTGCTGGTTTTGATACTTCCGGCTAAGCT
GATTTTTAAGCCATATTATAAATAAATCTACACTGTCAATAATTTTGAAA
ATATTTTAGATTTACGAAACAAATCTTGATTATTTTTCTTTTATTTGGTA
TTGGTGTTTCTAAAATTAGATTTGTAAAAATTTCTTGTGGATTAAAAATA
AAATTTATTTTCGTCATTATCATTATGAAATTTTAATGATGAAATTTTCT
CCTCCTTTTTTTGAATGCGGATTTTAAAGAAGCGGCCAGAATGATAAAGG
GATAAATCGTTTTCTTCATTTCAAATTTTGGGACTCCCTTTTGGAGGTTT
CATTTCCCTTGTGAAAAAATATAAAATATTTTGAATAGAGAAATTATTAT
ATCGGAGAATTTTCACTATTTTTGTATAATGGAGACCATCGATATTGAAG
AAATTAACAAAAAACACCATATCTCCTTAGGTATGTAAGAATATTTGTAT
CATCGCGAGGAAGAACTGTGTGGAAAGTGATTAGAAAATTAGTCGATATA
ACCAACTAGATGTTAACACTGATACTACTCTAAGGTCCCAAATAAACATT
AATTAATTTTCGAAAAGTTTTCAGACCCCTGTTCTTATTAGGACCCTCCC
TTGTTTATTTATTTTTGAAAATATTTTCAGTTATCACTGAATTGTTTTAA
ATAGCCTGTTTTTGGCTTGTAATTGCCTTCTTTTGAGGGTTTTTGGAGGT
ATAATTTTGGATTCCCCTTTTATTGAAGAATTTATCGCTTGCTACAGTAG
CAATACTTTGGCCAGGTTTTATGAGCGAGTGTACCATCCCATGGTCTCAA
GCAGATTTCAATTGCATATAATAAAGTTCAAGTAAATGTGTCAATTGCTA
GGTTTGAATTATTTTTTTTTTTCAGATAATTCCATCCTCGAGAAGTTCGC
ACCGATTCCAGAGAAGGTCCCGGAATGGAAAAAAGAAATCATTAAACGAA
AAAATGAAAAGCTTTTGGTAAGATGGATTTATATTTAAACAGCTTTTAGG
CGTTAATCTTTCCAATAGAAAGTTAAGGTATATCTCATAACCATAGGAAA
TCACCCGGGGGTACTTAGGCAAATGGAGGGTACAGTATGTGCTGCCCTTA
AGAGTACCTTTTTTGGATTTGCAAAGTCCCGCTAAGGGTCGGAAAAATCA
GAAAATCAAATTTCAGTCCCACTAAGGGTAGGAGAAATAGGAAAATTTCA
ACTTTTTACCTCCAGAAAGATAGAAATTTGGTCAAATTGTTCAATTTTGT
CCCGGTAAAATTTTCAAATTTTCCTTTTTTTCTCGTTTTTAGTCCCGGTA
AGGGTCCGAGGGTCGAAAGTTGAGTGGCACCCCCCGTCAGCTCGCAACCC
TAGTACCCCCCCGGGACCCCCTTCTCACAGCAGACCCACTGGGACCCCTT
CCCACTGGAAAAATTGTCTTAATTTTCCTCCCCCATGGAAAATTATCCTC
CAATTTTTGTCCCCAGTGAAAATAACCAAATAAACCTGTCCTCACTGCAA
AATATTTATTCTCTTTTCCCATCCTCACTGAACTTTCTGACTTAAAAACA
AAAGAGTTGAAATCCCCAGCCCATCAAGTTTCAGTTCGTTATTTTTACCC
CCACTGGTTGTAAAAATCCTACCGGGTCTGTGAGAAAGAGGTGTAGGAAA
ACACACTCAGCTCTCATTACACAATGGAAAAAAACTTGAAAGAGCATTGC
AATCTCGATAATATTAAGGATCTCTTTTGAGCTTCTAGCTAGATAAACAA
TAACAATGACATCCCCATCCATTGAAAATAGTTAACTTACTATCTCCTGG
CATATAACTCCTTCCATTTCCGATTGACTAAAAAACTCTAGTCATCAATG
TTTATTGGGCTTTCTTTAAAATGCAAGCTGTGATCTTAAAAGCATGTTAA
TCTTTTTTGTGCTGACTGTCAGCAATAAGTAGCAAGCAGGTAATGATGAA
GAGCTTGGACTCTGTCAAATGTGTTTTGGTCAATACAAATCTTGAAAATC
ACTCGTATACCTACTTCCACTCCAAACTCTCTATAGAACATTCCCTTCTC
ACAGACCCGGTGCGATTTTATCAGCCAGTTGGGGTAAAAGTAACGGACCA
ATACTCGATGGGGATTGATATTCCCATGTTTTTATGGCCGGGGATTTGAA
TTCCATCGTTTTCTAGCCAGAAGAATTCAGTGGAGATGGTGAAAATAGTA
CTTAGTATTTTACTTTGAGGATTTGTTTATCTGATTATTTTCAACGAGGA
CAAAAATTAGAGTATAATTTTCCACTGGGGACGATATTTTGGCCAATTTT
CCCAGTAGGACGGGTCCCCAGTGGGTCTGTGAGAAGGGGGTGTTATAGAC
AAAGAATTAATTCTAAACCTCTATTCCTTCATAAACTACCTTTACTTCTC
ATAGGTATCTAGTAAATGGGGTTCAGAATAAACTGGGAGGGGATTTTAAA
ACCGTTGGGTCGTTTATTAGGCGCTAGAGGTAAATGAGCGACGTTGGGGC
GTATTTGTTGATAACTTTAACCCTTTGCGTTCAGGGGTTACAAGCAGTGC
TCTTGCATGTAAATGGTTTTCTCACATAGAAAGTTAGTCGATTTGCATCC
AAATATACATTCATCCCCTTTTAATTGATTTAAGGATGCTTAAGGGAAGT
AATCAATTTATTCCGCAATAAAAATACCTTTATTGTTACCATATCAAATT
CAAGTTAGCATGTAGTTACACTGCGTTTTTTATGAGGGAAGGTCAAAAAA
CATTATGAATATAGATCTATAAAGCCCGAAGGGCTAGATGACATGCTTTG
TTTGAAAGGTGTGCCTTGGTTTGCGGTAGGAAGTCTTTCCGAGGTCACGT
GATATTACAATAGAATTTCAGCGCTTGACCAATCAGAAGCTTCGCGACTG
TTCGAAAACAATAGCAACAATACTTTTTGCGATTTCAATTTTTTTTGCTT
GGAAAAGTTTGACACCCCATCTAGCACTTCGGGCTTTACAGAAATCTATG
ATTATGAAAGGAACTATAAAAACAATCTTGTTGATACTAACTTTTGTGCC
ATAAATGGTAGTGTGACCAGTGGCCGATTTTTGGTTGGTGGTGTCGAAGG
ACACCAGAACGCTTAAAAGAACCCATCGTCGCTTTTTCGGCGCATCTTAC
CCTTTTTCACCACACAAACAGTAATATTCCAGCTGGCACACAACGTTGTT
ACAACGTTCATCTAACGTTATATGGACGTTGTGAACATTAGATGAACGTT
GAAACGACGTTGTGTGCCAGCTGGGATNNNNNNNNNNNNNNNNNTGGACG
TTGTGAACATTAGATGAACGTTGAAACGATGTTGTGTGCCAGCTGGGATT
TTAGTCAAGGGGATCAAATCCTCACATTCTAATACCCGTTATACTATACT
ACTTTATACTATCACACCGGAAAAATTAGCACATTTGAGGCAGAGGTTCA
AAGGTTAATCTAAACGCACTAAAGGAATCTTAAACGTTAAAAGACATTGT
CATTCTGTCATTTTCAGCAAGACGCAATCGACGAAGCAATAGCACAGAAA
GATCCATACGCTGGAGTTCCACAATGGAAGAAAGAACTTCTGATCAAGCG
AGATAATGAAAAAGCGCAGCATAAAGAACGACTTTCCGTTGAACAGAAAG
TAAAGGAGGAGGTTACCAAGAAATTTGAAACCAAACCAGAATGGAAAAAA
GATCTGATCTTAAAACGTCGTATTAGTCAAGAATCCCCACGACAAATGCA
AACTTGAAATTCGTTATAATTATTTTGTGTTTTTAGTCTTTGTGTGATGT
AAAATATGAGTTTACTTTGATTATTTCATTTAGGGACAATATACTTATGT
TTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054064-exon-scaffold_239-1575043694:51718..51793 | TCONS_00054064-exon-scaffold_239-1575043694:51718..51793 | Clytia hemisphaerica | exon |
| TCONS_00054064-exon-scaffold_239-1575043694:46377..46468 | TCONS_00054064-exon-scaffold_239-1575043694:46377..46468 | Clytia hemisphaerica | exon |
| TCONS_00054064-exon-scaffold_239-1575043694:43489..43826 | TCONS_00054064-exon-scaffold_239-1575043694:43489..43826 | Clytia hemisphaerica | exon |
| TCONS_00054064-exon-scaffold_239-1510915933:51718..51793 | TCONS_00054064-exon-scaffold_239-1510915933:51718..51793 | Clytia hemisphaerica | exon |
| TCONS_00054064-exon-scaffold_239-1510915933:46377..46468 | TCONS_00054064-exon-scaffold_239-1510915933:46377..46468 | Clytia hemisphaerica | exon |
| TCONS_00054064-exon-scaffold_239-1510915933:43489..43826 | TCONS_00054064-exon-scaffold_239-1510915933:43489..43826 | Clytia hemisphaerica | exon |
| TCONS_00054064-exon-scaffold_239-1491911889:51718..51793 | TCONS_00054064-exon-scaffold_239-1491911889:51718..51793 | Clytia hemisphaerica | exon |
| TCONS_00054064-exon-scaffold_239-1491911889:46377..46468 | TCONS_00054064-exon-scaffold_239-1491911889:46377..46468 | Clytia hemisphaerica | exon |
| TCONS_00054064-exon-scaffold_239-1491911889:43489..43826 | TCONS_00054064-exon-scaffold_239-1491911889:43489..43826 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_239 | supercontig | scaffold_239:43489..51793 - |
Blast
The following BLAST results are available for this feature:
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