|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054074 ID=TCONS_00054074|Name=TCONS_00054074|organism=Clytia hemisphaerica|type=transcript|length=3679bpRun BLAST on NCBI transcript from alignment at scaffold_239:85093..98313- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054074 ID=TCONS_00054074|Name=TCONS_00054074|organism=Clytia hemisphaerica|type=transcript|length=13221bp|location=Sequence derived from alignment at scaffold_239:85093..98313- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054074 vs. Swiss-Prot (Human)
Match: MRP1 (Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=3) HSP 1 Score: 975.311 bits (2520), Expect = 0.000e+0 Identity = 521/1154 (45.15%), Postives = 751/1154 (65.08%), Query Frame = 3
Query: 15 LSNQSRTKYPSGKLINFMSTDADRSYQVVTYLVVSWSAPLLIIVSLLSLFRLIGWSTLAGLVVILLSNPINYLSTQLVRKYNQQLVKFKDQRLKLMSEIISGIKIIKMYAWEGSFMQKVTEIRKQELRFVRKSMILSASWDFSITCLPFFVSLATFAVYVYI-EKGVLTAEKAFVSITLFNIMRYPFSVVPIFISAVVNYNISAKRISEFLNCEEFDSNGYIRLPGPCDASLN-IEIHNGSFGWTPEDK-ALKDISLGVARGQLIAVVGQVXXXXXXXXXXXXXXXXXVCGSVKTYGKIAYVSQQAWIQNKNLRQNVLFGKYYRNEAYKKILRACALETDIELLPASDLTEIGEKGINLSGGQKQRVSLARAVYENADIYLFDDPLSAVDAHVGKHIFENIIGSNGLLKDKTRVLVTHGLSFLPHVDHICVIKDKTISQHGSFEKLLESNGGFADILNQFAKASNDNDLEQ------------SIEKEKSTLVDDDHDDEIYEEAPNHPVFQGQISLHSQGGILTTSGKNLYRVIDRMTDEQLFXXXXXXXXXXXXXXXXXKWKLIEQEKVETGNVKLTILMKYLKTIGILASLVIVTCGILQEASLVGSRFWLAHWSSLSPIT--AKLHRNELISVYGLLGLAQGXXXXXXXXXXXXXSYRSSKKLHFQLLDTILHCPISFFESTPSGRIMNRFTKDIGGLDSSIPTNLRTCLVDGMGLLGVVYVISFATPLVMVAFIPIFVIYILTQRIYVKSSRQLKRIISINQSPIFNHFMESINGASTIRAFGKVDEFIDENHRRIDHLQRPFLANIMCDRWMLIQIKMLGIFVALFTAIFCVMEKGNISPGILGLTVSYAIQMTQSLISLVRSSNGLEVNLVSIERINDYISKPREASITLQPSREVTP--DWPQNGEISLVNYSVRYRPSMPLVLNSINITIRPQEKVGIVGRTGAGKSSITLALFRIIEASSGYISIDGVKISNVTLQELRSKISIIPQDPVLFSGSIRFNVDPFQRHTDEQIWNALEISRLKKFVSTLSGGLDSEVQEGGDNLSVGQRQLICLARALLRMSKILIMDEATASVDMETDLFIQQTIRKEFTGCTILTIAHRLNTIMDYDRILVMEKGEVAEFDSPKTLLADHTTIFYSMVKNAGLL 3419
++N +R G+++N MS DA R + TY+ + WSAPL +I++L L+ +G S LAG+ V++L P+N + + Y +K KD R+KLM+EI++GIK++K+YAWE +F KV IR++EL+ ++KS LSA F+ C PF V+L TFAVYV I E +L A+ AFVS+ LFNI+R+P +++P+ IS++V ++S KR+ FL+ EE + + R P N I + N +F W D L I+ + G L+AVVGQVG GKSSLLS++L E++KV G V G +AYV QQAWIQN +LR+N+LFG Y+ +++ACAL D+E+LP+ D TEIGEKG+NLSGGQKQRVSLARAVY NADIYLFDDPLSAVDAHVGKHIFEN+IG G+LK+KTR+LVTH +S+LP VD I V+ IS+ GS+++LL +G FA+ L +A + D E+ + + E LV D ++ + + + G IS H S L + + + WKL+E +K +TG VKL++ Y+K IG+ S + + + S + S +WL+ W+ PI + H +SVYG LG++QG V ++ +++ +S+ LH LL +IL P+SFFE TPSG ++NRF+K++ +DS IP ++ + ++G VI ATP+ + P+ +IY QR YV SSRQLKR+ S+++SP+++HF E++ G S IRAF + + FI ++ ++D Q+ + +I+ +RW+ ++++ +G + LF A+F V+ + ++S G++GL+VSY++Q+T L LVR S+ +E N+V++ER+ +Y +EA +Q E P WPQ G + NY +RYR + VL IN+TI EKVGIVGRTGAGKSS+TL LFRI E++ G I IDG+ I+ + L +LR KI+IIPQDPVLFSGS+R N+DPF +++DE++W +LE++ LK FVS L LD E EGG+NLSVGQRQL+CLARALLR +KIL++DEATA+VD+ETD IQ TIR +F CT+LTIAHRLNTIMDY R++V++KGE+ E+ +P LL +FYSM K+AGL+
Sbjct: 410 ITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWLNLGPSVLAGVAVMVLMVPVNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFKDKVLAIRQEELKVLKKSAYLSAVGTFTWVCTPFLVALCTFAVYVTIDENNILDAQTAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRPVKDGGGTNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASTEQEQDAEENGVTGVSGPGKEAKQMENGMLVTDSAGKQLQRQLSSSSSYSGDISRHHN------STAELQKAEAKKEE---------------------TWKLMEADKAQTGQVKLSVYWDYMKAIGLFISFLSIFLFMCNHVSALASNYWLSLWTD-DPIVNGTQEHTKVRLSVYGALGISQGIAVFGYSMAVSIGGILASRCLHVDLLHSILRSPMSFFERTPSGNLVNRFSKELDTVDSMIPEVIKMFMGSLFNVIGACIVILLATPIAAIIIPPLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQ---ETAPPSSWPQVGRVEFRNYCLRYREDLDFVLRHINVTINGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEIQEYGAPSDLL-QQRGLFYSMAKDAGLV 1531 The following BLAST results are available for this feature:
BLAST of TCONS_00054074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.