TCONS_00054082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054082
Unique NameTCONS_00054082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054082 ID=TCONS_00054082|Name=TCONS_00054082|organism=Clytia hemisphaerica|type=transcript|length=607bp
GGGATGTTTTGTGTTGAAGCTTGGCTGATTAACGATTCTCCAGACACTTT
AGCAGTTGCTTGTTTAGACAAGTCCAGAAGAGACATACCAGTATCTTCAT
CAGAAATGCTTGGTGGTTGAGCATCTTCTTGGTTGGTTTGCTGTTGAATG
TCGGTGTTCAATTTGTCGTTCGATCTGTTCTTTGACATTGCGAGCAACCC
ACCCAACAATGATTTGTTCTTTGGTGGAGGATTGGTGTCAGTACATCCGT
CTGATGATGGTGTTTTCTGCAATGGTGCACCATGCAGAGCTGGCAAGTTG
CCTAATAATGGTTTACCTTTCAAAGCCGGTAATTCAGCTTTAAGTGGTGG
CAAGGCTTTCAAGGAAGCCAAAGGTTTGGTTTGTTTCTTCGAAGACTTCT
TCTTCTTATCTTTCTTTGTCTTCTTTTTGGAGATTTTGTTGGAGTTTCCA
TCTCCAGATGAGATATCCTCAGAAGAAGATTGTGATTTCTCATTCATCAT
GGAGTTGTCGGAACTCAAACTAGCGACAGACTCTTCACAAACTTCACCAA
CATCCTTGTCAATCGATGGTTGTGCGTTGTTGATGAAACATTCACCCCAT
TCTCGTT
Run BLAST on NCBI

protein sequence of TCONS_00054082-protein

>TCONS_00054082-protein ID=TCONS_00054082-protein|Name=TCONS_00054082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
REWGECFINNAQPSIDKDVGEVCEESVASLSSDNSMMNEKSQSSSEDISS
GDGNSNKISKKKTKKDKKKKSSKKQTKPLASLKALPPLKAELPALKGKPL
LGNLPALHGAPLQKTPSSDGCTDTNPPPKNKSLLGGLLAMSKNRSNDKLN
TDIQQQTNQEDAQPPSISDEDTGMSLLDLSKQATAKVSGESLISQASTQN
I
Run BLAST on NCBI

transcript from alignment at scaffold_239:72826..73432

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054082 ID=TCONS_00054082|Name=TCONS_00054082|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at scaffold_239:72826..73432 (Clytia hemisphaerica)
AACGAGAATGGGGTGAATGTTTCATCAACAACGCACAACCATCGATTGAC
AAGGATGTTGGTGAAGTTTGTGAAGAGTCTGTCGCTAGTTTGAGTTCCGA
CAACTCCATGATGAATGAGAAATCACAATCTTCTTCTGAGGATATCTCAT
CTGGAGATGGAAACTCCAACAAAATCTCCAAAAAGAAGACAAAGAAAGAT
AAGAAGAAGAAGTCTTCGAAGAAACAAACCAAACCTTTGGCTTCCTTGAA
AGCCTTGCCACCACTTAAAGCTGAATTACCGGCTTTGAAAGGTAAACCAT
TATTAGGCAACTTGCCAGCTCTGCATGGTGCACCATTGCAGAAAACACCA
TCATCAGACGGATGTACTGACACCAATCCTCCACCAAAGAACAAATCATT
GTTGGGTGGGTTGCTCGCAATGTCAAAGAACAGATCGAACGACAAATTGA
ACACCGACATTCAACAGCAAACCAACCAAGAAGATGCTCAACCACCAAGC
ATTTCTGATGAAGATACTGGTATGTCTCTTCTGGACTTGTCTAAACAAGC
AACTGCTAAAGTGTCTGGAGAATCGTTAATCAGCCAAGCTTCAACACAAA
ACATCCC

Coding sequence (CDS) from alignment at scaffold_239:72826..73432

>TCONS_00054082 ID=TCONS_00054082|Name=TCONS_00054082|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_239:72826..73432 (Clytia hemisphaerica)
CGAGAATGGGGTGAATGTTTCATCAACAACGCACAACCATCGATTGACAA
GGATGTTGGTGAAGTTTGTGAAGAGTCTGTCGCTAGTTTGAGTTCCGACA
ACTCCATGATGAATGAGAAATCACAATCTTCTTCTGAGGATATCTCATCT
GGAGATGGAAACTCCAACAAAATCTCCAAAAAGAAGACAAAGAAAGATAA
GAAGAAGAAGTCTTCGAAGAAACAAACCAAACCTTTGGCTTCCTTGAAAG
CCTTGCCACCACTTAAAGCTGAATTACCGGCTTTGAAAGGTAAACCATTA
TTAGGCAACTTGCCAGCTCTGCATGGTGCACCATTGCAGAAAACACCATC
ATCAGACGGATGTACTGACACCAATCCTCCACCAAAGAACAAATCATTGT
TGGGTGGGTTGCTCGCAATGTCAAAGAACAGATCGAACGACAAATTGAAC
ACCGACATTCAACAGCAAACCAACCAAGAAGATGCTCAACCACCAAGCAT
TTCTGATGAAGATACTGGTATGTCTCTTCTGGACTTGTCTAAACAAGCAA
CTGCTAAAGTGTCTGGAGAATCGTTAATCAGCCAAGCTTCAACACAAAAC
ATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034132XLOC_034132Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054082-proteinTCONS_00054082-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054082-exon-scaffold_239-1491911889:72826..73432TCONS_00054082-exon-scaffold_239-1491911889:72826..73432Clytia hemisphaericaexon
TCONS_00054082-exon-scaffold_239-1510915933:72826..73432TCONS_00054082-exon-scaffold_239-1510915933:72826..73432Clytia hemisphaericaexon
TCONS_00054082-exon-scaffold_239-1575043694:72826..73432TCONS_00054082-exon-scaffold_239-1575043694:72826..73432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_239supercontigscaffold_239:72826..73432 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0869256	0.100929	0.394973	0.12021	0	0.229207	0	0	0	0	0	0.0592843	0	0	0	0.133834	0.0685879	0	0	0	0	0	0	0	0.256245	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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