TCONS_00054095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054095
Unique NameTCONS_00054095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054095 ID=TCONS_00054095|Name=TCONS_00054095|organism=Clytia hemisphaerica|type=transcript|length=790bp
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcgttcgttcgttcgttcgttcgtttacAATAATGTT
ATTTTGTTGCTTTCCTACAGGGAGCATTCGCGTGATGAATTTCACGAAAG
ATATTCTGCATGGTGGTTCGTTATCCAAAGAATTCCATGCCGACTATGAC
AACATTACCGGATACGATTACAATATTGAACTTATAGCACCCTATGATAA
TGTTGAGGCGCTGAATCTACCAAAAATATAGAAGAAAAGTTAGTCACGGT
AAgttatttataattttattaGGTTATGATTTAACCTCGCAAAGTATAAG
TTTCAGATGAGTCGGAATGACATCAGCTCTCAGAAACTGTACTGCAATGC
CTTTCTGTGACGTAATTTCAGAACAAATTTGATCTGATTATCTATCTGCG
CATATGCCATGCTCTGCTCTAAATGGATATGGGGTATGTGACGATCTGAC
CTAgttgttcagccaaaacattcaaaaccgcGTTATCGTTTGCTTGAAAA
TAAAAGCGAAAGTTACTGGGTCCCAATGCTTATGTTTTATATGATGAGCG
CTTGTTTTGGTTTCGATTTGGTGCCATTGCATTTAGACTACATACGTGCC
AGTGCGGACAATCAGGATCTGCTCGGACATTACTAGTGACGTTTGTCCCA
CGCTTTCTGGGCAGTATATTTTGTTTAAAGGTACAGACCGAACGATGCTT
GTTTTCGCGTAAAGCAGGCTTAAATAACATTGATTTCCAA
Run BLAST on NCBI

transcript from alignment at scaffold_24:132762..133551+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054095 ID=TCONS_00054095|Name=TCONS_00054095|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at scaffold_24:132762..133551+ (Clytia hemisphaerica)
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcgttcgttcgttcgttcgttcgtttacAATAATGTT
ATTTTGTTGCTTTCCTACAGGGAGCATTCGCGTGATGAATTTCACGAAAG
ATATTCTGCATGGTGGTTCGTTATCCAAAGAATTCCATGCCGACTATGAC
AACATTACCGGATACGATTACAATATTGAACTTATAGCACCCTATGATAA
TGTTGAGGCGCTGAATCTACCAAAAATATAGAAGAAAAGTTAGTCACGGT
AAgttatttataattttattaGGTTATGATTTAACCTCGCAAAGTATAAG
TTTCAGATGAGTCGGAATGACATCAGCTCTCAGAAACTGTACTGCAATGC
CTTTCTGTGACGTAATTTCAGAACAAATTTGATCTGATTATCTATCTGCG
CATATGCCATGCTCTGCTCTAAATGGATATGGGGTATGTGACGATCTGAC
CTAgttgttcagccaaaacattcaaaaccgcGTTATCGTTTGCTTGAAAA
TAAAAGCGAAAGTTACTGGGTCCCAATGCTTATGTTTTATATGATGAGCG
CTTGTTTTGGTTTCGATTTGGTGCCATTGCATTTAGACTACATACGTGCC
AGTGCGGACAATCAGGATCTGCTCGGACATTACTAGTGACGTTTGTCCCA
CGCTTTCTGGGCAGTATATTTTGTTTAAAGGTACAGACCGAACGATGCTT
GTTTTCGCGTAAAGCAGGCTTAAATAACATTGATTTCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034139XLOC_034139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054095-exon-scaffold_24-1491911889:132762..133551TCONS_00054095-exon-scaffold_24-1491911889:132762..133551Clytia hemisphaericaexon
TCONS_00054095-exon-scaffold_24-1510915933:132762..133551TCONS_00054095-exon-scaffold_24-1510915933:132762..133551Clytia hemisphaericaexon
TCONS_00054095-exon-scaffold_24-1575043694:132762..133551TCONS_00054095-exon-scaffold_24-1575043694:132762..133551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:132762..133551 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.972272	0.723971	0.455235	0.184901	0.431611	0.31193	0.371817	0.505197	0	0.246187	0.159442	0.20366	0.087753	0.0509514	0	0.421655	0.233689	0.108409	0.0991071	0	0.236557	0.217939	0.712393	0.708609	0.12417	0	0.0899765	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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