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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054097 ID=TCONS_00054097|Name=TCONS_00054097|organism=Clytia hemisphaerica|type=transcript|length=1581bp
AAAATCGAAGGATGTCAAAATTTACGTAACCGATGTAATCTGAAACTTGT
TCAACGGAAATGTAAATCCACTTGTGGTTTGTGTGGTATGAtgtttattt
ttgctttttcaatCTCCATCTCTACAAACCCAGGGCCAGGGGTACGTAGG
CGTATGAGGGTGCAAAGATGTTTTCCTTTTAATAAGGGCGTCTTTTGTTT
TCAACATTTGAATAGTCGCCATGTCGTAGAACTGATTCCCTTTTCCTCCC
GGGTTCTTGCATCCcttgaaagtgaaaaatgacTCAGTTCAATctcagtt
tttataaaaaaattgtcatttgGCCCTGGGAAATTCAAATTACATCGTCT
GCCATGCAGTCTTATGGCGCAAGAGTTTACAATTGTATGCTAGACTAAAT
CATTATCGGTGGATGTAATTAAAGAGTTACATAGAGAGTTACAGAGTTAC
ATTGGCACTTGTTATTGAAAAAAACTCACAGATGTCTTGTACAGTAGATT
GGCTGAACTTTTGGTAAAAACGTAATTAGAGCAATTCCGTGGTATTGGTA
TTTCCAGATGTACCGgccaaattattttttctactGTGTACAAATGCATC
GATGTTTGAACAAGTTAGTTTTTACCTACCCAGAGTCCTGGGTCTTCTCC
CGTCGCGTGTTTTGCCATCCTACCCCATCTGCCATCTTTCATTATAGGAC
GTCGTGTTTTTATGCGATTTTCCGTCATTTTATTGCCGTCGACTTTGGTC
CAGGATGGCACATTATTTTAATTCAAGGCCAGCAACCTGGGAAAAATTAA
GTAGCTCGACACTAGTGTTTTATTAAAGATATCTATGGGAATCTTCTACC
CGATATATCCCTGAATACTAGATGACTTCTTGAGGTTACGGTATCTCATC
AAAAGATCAACTGTTTTTCTATCTATCTCTTCAGTACCCAGTCCGCCATT
GCATTGTGGGTTGACAAAATATGGCTGTTGCTGGGACAATCAGACACGTG
CGAACTCTTCGAACAAAGATGGTTGTCCACGTAAGCTAATAaatcatttc
taaaaatatgcTCTTAAAAATTCCAAATACTTGTGGTTTGACATTTTACT
CCGGATTTTTTTCGAATTGTCTAAAGTTGAAAATATAGCTTTAGTCAGAT
TAGTTTTGCAAGTCTAAGAAAATTTTACCCCACTATTATTTGGATAATAC
TTTTTTATAGGcacttcattttcctttttttttgaaagtcagtTTTTTGA
CACAATCCAATGGATCTGTGGAGGTTTTATGTAAAGTTATAGACGGAACG
GTGTCAAGAAAAAAGCCGTTTTCTACTGGCACAGGCAACCAACGCCAAAA
TATTCCTCGTTAAATTAAAGGCAAAATTAGCTCCGTCAAAtttgttagtt
ttttctttcataattTTTGGGTTGTGGCCTCCTCCTCCTCCGCTAATTTC
AACAAACCAGTCTTTCACTTTCCATTCAGCTTGCGCAGATAAACATTCGA
TGTGCAGATTCTTCAAGAGTGAATGTTCCGCTCGTCCAGATGTTCGGTTA
GTTTGCCCAATTACATGCGGAATACCATGCG Run BLAST on NCBI transcript from alignment at scaffold_24:139984..141564+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054097 ID=TCONS_00054097|Name=TCONS_00054097|organism=Clytia hemisphaerica|type=transcript|length=1581bp|location=Sequence derived from alignment at scaffold_24:139984..141564+ (Clytia hemisphaerica)
AAAATCGAAGGATGTCAAAATTTACGTAACCGATGTAATCTGAAACTTGT
TCAACGGAAATGTAAATCCACTTGTGGTTTGTGTGGTATGAtgtttattt
ttgctttttcaatCTCCATCTCTACAAACCCAGGGCCAGGGGTACGTAGG
CGTATGAGGGTGCAAAGATGTTTTCCTTTTAATAAGGGCGTCTTTTGTTT
TCAACATTTGAATAGTCGCCATGTCGTAGAACTGATTCCCTTTTCCTCCC
GGGTTCTTGCATCCcttgaaagtgaaaaatgacTCAGTTCAATctcagtt
tttataaaaaaattgtcatttgGCCCTGGGAAATTCAAATTACATCGTCT
GCCATGCAGTCTTATGGCGCAAGAGTTTACAATTGTATGCTAGACTAAAT
CATTATCGGTGGATGTAATTAAAGAGTTACATAGAGAGTTACAGAGTTAC
ATTGGCACTTGTTATTGAAAAAAACTCACAGATGTCTTGTACAGTAGATT
GGCTGAACTTTTGGTAAAAACGTAATTAGAGCAATTCCGTGGTATTGGTA
TTTCCAGATGTACCGgccaaattattttttctactGTGTACAAATGCATC
GATGTTTGAACAAGTTAGTTTTTACCTACCCAGAGTCCTGGGTCTTCTCC
CGTCGCGTGTTTTGCCATCCTACCCCATCTGCCATCTTTCATTATAGGAC
GTCGTGTTTTTATGCGATTTTCCGTCATTTTATTGCCGTCGACTTTGGTC
CAGGATGGCACATTATTTTAATTCAAGGCCAGCAACCTGGGAAAAATTAA
GTAGCTCGACACTAGTGTTTTATTAAAGATATCTATGGGAATCTTCTACC
CGATATATCCCTGAATACTAGATGACTTCTTGAGGTTACGGTATCTCATC
AAAAGATCAACTGTTTTTCTATCTATCTCTTCAGTACCCAGTCCGCCATT
GCATTGTGGGTTGACAAAATATGGCTGTTGCTGGGACAATCAGACACGTG
CGAACTCTTCGAACAAAGATGGTTGTCCACGTAAGCTAATAaatcatttc
taaaaatatgcTCTTAAAAATTCCAAATACTTGTGGTTTGACATTTTACT
CCGGATTTTTTTCGAATTGTCTAAAGTTGAAAATATAGCTTTAGTCAGAT
TAGTTTTGCAAGTCTAAGAAAATTTTACCCCACTATTATTTGGATAATAC
TTTTTTATAGGcacttcattttcctttttttttgaaagtcagtTTTTTGA
CACAATCCAATGGATCTGTGGAGGTTTTATGTAAAGTTATAGACGGAACG
GTGTCAAGAAAAAAGCCGTTTTCTACTGGCACAGGCAACCAACGCCAAAA
TATTCCTCGTTAAATTAAAGGCAAAATTAGCTCCGTCAAAtttgttagtt
ttttctttcataattTTTGGGTTGTGGCCTCCTCCTCCTCCGCTAATTTC
AACAAACCAGTCTTTCACTTTCCATTCAGCTTGCGCAGATAAACATTCGA
TGTGCAGATTCTTCAAGAGTGAATGTTCCGCTCGTCCAGATGTTCGGTTA
GTTTGCCCAATTACATGCGGAATACCATGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054097-exon-scaffold_24-1491911889:139984..141564 | TCONS_00054097-exon-scaffold_24-1491911889:139984..141564 | Clytia hemisphaerica | exon |
| TCONS_00054097-exon-scaffold_24-1510915933:139984..141564 | TCONS_00054097-exon-scaffold_24-1510915933:139984..141564 | Clytia hemisphaerica | exon |
| TCONS_00054097-exon-scaffold_24-1575043694:139984..141564 | TCONS_00054097-exon-scaffold_24-1575043694:139984..141564 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:139984..141564 + |
Blast
The following BLAST results are available for this feature:
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