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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054106 ID=TCONS_00054106|Name=TCONS_00054106|organism=Clytia hemisphaerica|type=transcript|length=1963bp
CATGTCTAAAAAAGTTCAAGCCTAGAAAGATTATTTGTATGTTTGGTGTG
ATTTCCTGTTCTTGACTCGCTAAAACTTTTACACCGTTCTCAGTCTTTTA
GCATTATCTAATTTTTTTAGTGAAATCGGTGAATGTGAAAAAATGGTATG
TAGCAAGAAATTGGAGAAATATGGCTAACCAAATGAAGAAAAGTTCCATT
GTTTTATGGGTTTTAGTGATATCCCTCGATTTCGCATCAAACCTTGAAGT
AACTGGTTTAAATTTGGTCAACAAAACGTTGATAGGAAACGTCACGCTGC
AACaatcaaatttccaaaatggtcAACTTAACATTTCTTCAACAAATTCA
ACACGTGTTGCCAGACCTCTGATTACAAACCAATCAAAAACGTCCGTCAA
GGAAAACAGCCAATCAAAAGCGAGCGTCGTTGATAAGAAGCAATCAAAAG
TGACCATCAAGGAAGACAAAAAAGACATTGGccaaaacatacaaaaagaC
TTATCAACAAAATCAGAGATTTATAAAATGCATTCAAATGGATTAATGCT
TCTACACCCTCAACGTTCATCGATAgcaaaaagttccaaaaaatcaaaac
ttgctTCAAGTTCGTCAGATGATAGTGCTGTTAATTATCATATATGGAAG
AAACCGGATCACGACAAAACGACAAATCAGTCGTCGGCTATCGTTGAAAA
CGAGAAATTTTTAGAGACTAAATTAGGAAATCTTCCACAAATACAAGAAG
GGAAACGAGAAACGACGACTTTTAGCGAAAATTGTCTTGATACGGATCCA
ATCGGAGGCAAACCTTGTAATGTAGACGAGGAAAGTAACGAAAAACAGGA
TTATTTACGCCGAAAACGAGAATCGATTTTACAACGAAGAACGAGTACCG
AGGATCGAGAATCGACTTTAAACCGAGAAACGAGAAACGAAGATGATCCT
TTATTCGACGATGATCAACCTGAAGAAATTCTTCgccgagaaaaagaaaa
acgaagactaataaaattaaaatcaagaTACGGGAGCGCTCTATCTAGAG
GTATTCCCGATATCCCAGCAATAAAACCGATTCCCGATATACAATCCCGA
TTCGAGAAAATCGAGCCTTTAGAAACGATTCCACGGTTCGGACTTTTTGG
GCCAGAGGCGTACGACAACTGGCCAAGATTTGGTGTACCGGATTTAAGTT
TGATGCATTATCCACGTTTTCCAGCACCTAAAATGGACGAATTTGAACAA
ATACCAGGGATCCCACATATCCGGCCTTTAAGTCGCGGAGATGAAGTGAC
CGGTGACCGGAGAGGTTACCCCGCGAAAAACGATGATTTTTATGACCAAG
AACTCGATGAGGACATTGAGCATAATTCACCAATAACTTCACCAACAGCT
ATTCCCTCACTAACGAATATACCAGACATACCTGACATTCAAGATATACC
GACCATTAGTCCAGCCCGCGCGGCCGCTCGCAAATCGTCAAACGGACAAC
CAGCGGTTGATACAATTCATACGAAAGATGGGGATGAGACGAGGGTGTCT
ACTTAAGAATGAGTGAGAAAGGAAAGTAGTTTCCGTTGGTTGAGAGCGTT
TCTGAGCTTTTGTTTACGGTATCTCAGCTTACATTATCGAACGTGTTATA
GATGTTTGATGGACACTGTTTTGACGTATTGTGTaataaaaattacaact
taCTATATTCCTTGGTCCTCATTTAGGTCAAGAGTCGTTACAGTGAGTCT
GGAAGAATGCTTTTGTATAAATCAAGTGTATCATCTTTCTGGAGTGTAGA
ATACATAAAATGAGAcgaaatttattcatttttcaagaGGTACatcacct
gaccccgagaatgtagtaaaccccgagaatgtaggtttctcattttttag
cattgtagccctaacgatagttcaacttcttaaaaatttgtttcagagca
tactgCTACATCT Run BLAST on NCBI transcript from alignment at scaffold_24:159166..161982- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054106 ID=TCONS_00054106|Name=TCONS_00054106|organism=Clytia hemisphaerica|type=transcript|length=2817bp|location=Sequence derived from alignment at scaffold_24:159166..161982- (Clytia hemisphaerica)
CATGTCTAAAAAAGTTCAAGCCTAGAAAGATTATTTGTATGTTTGGTGTG
ATTTCCTGTTCTTGACTCGCTAAAACTTTTACACCGTTCTCAGTCTTTTA
GCATTATCTAATTTTTTTAGTGAAATCGGTGAATGTGAAAAAATGGTATG
TAGCAAGAAATTGGAGAAATATGGCTAACCAAATGAAGAAAAGTTCCATT
GTTTTATGGGTTTTAGTGATATCCCTCGATTTCGGTAAGACTATGTTATC
GTTCGCACTTTCAATGTGAAGCCGTCACCCGGCAATCTGAAGCGTCAGAC
ATCTATGAATACTAAAAGGGCTGGTTTTCGAGAATTTTAGCACACCATCG
AATTTTTGAAACTTTTTCAAAACTTTTTGGAAAATTGATCTCTCGGGAAC
AAATTAGTTATCACGGGACATTTATTTCTCAAAAAACATGCAACATGTTT
TTTTGTAAAATTACGAAAATCTTTGAAAGAAGATTCAGAAAATTACAAAT
ATCACTAATTACTTAATAAACATTTCTAAAACATTTCTCAAATATTTCTC
AATTTTCTTCTACATACATATCACGTTTTTGGAGATTCTTTGGCATACAA
CCACGTGATGTCCTAAGATTTTAGCACTCGCCCCCTCCCCTGATATGCAA
TACACGCATTTTTATGAGAATAGTGTACTTTGGATGAGGGTCAAGTATTC
TTAAGAAAGTGCCAAAATTGAGGGTGAAATATTCTTAACGTATTCTTACT
TTTTTAGACTTGACTTTTTTACAAACATGAGAAATAATCAATTTGAGAGT
TTTGGACTTTTGAGTGAACATTTGGGTTAAAATTAGATATTTTCCTCAAA
GCTTCAATTCATCTCTAACAAAAACAAAGGAAACAGTTTTTTCTGTTAAC
CAAATACAAAATGACTGTAGTCTTATCAAATTCTGTGAAATTCACCCTAG
GGGGGTGTTCTTACGGTATTCTTATGATTTGGCCAATTTTCACCCTGATA
TTCTTATAGAAGATATTCTTTAAAAAAAAAGCGTGTAAATGTATGCATTT
TGTTGCTTTATAATTGTTTTTGCTAACTTCTTTCATAGCATCAAACCTTG
AAGTAACTGGTTTAAATTTGGTCAACAAAACGTTGATAGGAAACGTCACG
CTGCAACAATCAAATTTCCAAAATGGTCAACTTAACATTTCTTCAACAAA
TTCAACACGTGTTGCCAGACCTCTGATTACAAACCAATCAAAAACGTCCG
TCAAGGAAAACAGCCAATCAAAAGCGAGCGTCGTTGATAAGAAGCAATCA
AAAGTGACCATCAAGGAAGACAAAAAAGACATTGGCCAAAACATACAAAA
AGACTTATCAACAAAATCAGAGATTTATAAAATGCATTCAAATGGATTAA
TGCTTCTACACCCTCAACGTTCATCGATAGCAAAAAGTTCCAAAAAATCA
AAACTTGCTTCAAGTTCGTCAGATGATAGTGCTGTTAATTATCATATATG
GAAGAAACCGGATCACGACAAAACGACAAATCAGTCGTCGGCTATCGTTG
AAAACGAGAAATTTTTAGAGACTAAATTAGGAAATCTTCCACAAATACAA
GAAGGGAAACGAGAAACGACGACTTTTAGCGAAAATTGTCTTGATACGGA
TCCAATCGGAGGCAAACCTTGTAATGTAGACGAGGAAAGTAACGAAAAAC
AGGATTATTTACGCCGAAAACGAGAATCGATTTTACAACGAAGAACGAGT
ACCGAGGATCGAGAATCGACTTTAAACCGAGAAACGAGAAACGAAGATGA
TCCTTTATTCGACGATGATCAACCTGAAGAAATTCTTCGCCGAGAAAAAG
AAAAACGAAGACTAATAAAATTAAAATCAAGATACGGGAGCGCTCTATCT
AGAGGTATTCCCGATATCCCAGCAATAAAACCGATTCCCGATATACAATC
CCGATTCGAGAAAATCGAGCCTTTAGAAACGATTCCACGGTTCGGACTTT
TTGGGCCAGAGGCGTACGACAACTGGCCAAGATTTGGTGTACCGGATTTA
AGTTTGATGCATTATCCACGTTTTCCAGCACCTAAAATGGACGAATTTGA
ACAAATACCAGGGATCCCACATATCCGGCCTTTAAGTCGCGGAGATGAAG
TGACCGGTGACCGGAGAGGTTACCCCGCGAAAAACGATGATTTTTATGAC
CAAGAACTCGATGAGGACATTGAGCATAATTCACCAATAACTTCACCAAC
AGCTATTCCCTCACTAACGAATATACCAGACATACCTGACATTCAAGATA
TACCGACCATTAGTCCAGCCCGCGCGGCCGCTCGCAAATCGTCAAACGGA
CAACCAGCGGTTGATACAATTCATACGAAAGATGGGGATGAGACGAGGGT
GTCTACTTAAGAATGAGTGAGAAAGGAAAGTAGTTTCCGTTGGTTGAGAG
CGTTTCTGAGCTTTTGTTTACGGTATCTCAGCTTACATTATCGAACGTGT
TATAGATGTTTGATGGACACTGTTTTGACGTATTGTGTAATAAAAATTAC
AACTTACTATATTCCTTGGTCCTCATTTAGGTCAAGAGTCGTTACAGTGA
GTCTGGAAGAATGCTTTTGTATAAATCAAGTGTATCATCTTTCTGGAGTG
TAGAATACATAAAATGAGACGAAATTTATTCATTTTTCAAGAGGTACATC
ACCTGACCCCGAGAATGTAGTAAACCCCGAGAATGTAGGTTTCTCATTTT
TTAGCATTGTAGCCCTAACGATAGTTCAACTTCTTAAAAATTTGTTTCAG
AGCATACTGCTACATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054106-exon-scaffold_24-1575043694:161749..161982 | TCONS_00054106-exon-scaffold_24-1575043694:161749..161982 | Clytia hemisphaerica | exon |
| TCONS_00054106-exon-scaffold_24-1575043694:159166..160894 | TCONS_00054106-exon-scaffold_24-1575043694:159166..160894 | Clytia hemisphaerica | exon |
| TCONS_00054106-exon-scaffold_24-1510915933:161749..161982 | TCONS_00054106-exon-scaffold_24-1510915933:161749..161982 | Clytia hemisphaerica | exon |
| TCONS_00054106-exon-scaffold_24-1510915933:159166..160894 | TCONS_00054106-exon-scaffold_24-1510915933:159166..160894 | Clytia hemisphaerica | exon |
| TCONS_00054106-exon-scaffold_24-1491911889:161749..161982 | TCONS_00054106-exon-scaffold_24-1491911889:161749..161982 | Clytia hemisphaerica | exon |
| TCONS_00054106-exon-scaffold_24-1491911889:159166..160894 | TCONS_00054106-exon-scaffold_24-1491911889:159166..160894 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:159166..161982 - |
Blast
The following BLAST results are available for this feature:
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