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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054127 ID=TCONS_00054127|Name=TCONS_00054127|organism=Clytia hemisphaerica|type=transcript|length=2048bpRun BLAST on NCBI transcript from alignment at scaffold_24:257231..264012- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054127 ID=TCONS_00054127|Name=TCONS_00054127|organism=Clytia hemisphaerica|type=transcript|length=6782bp|location=Sequence derived from alignment at scaffold_24:257231..264012- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054127 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 6.059e-49 Identity = 191/739 (25.85%), Postives = 326/739 (44.11%), Query Frame = 1
Query: 4 LEGALE--DSAGTLAVTNLGDCHGLIWYVTFKSIGGDLPQLEVV-SKSEDLQTDVVVKTTQDGGIVHGPFTGDLLQQKMDKPQVTVDLFGLMSTCSNGSCAYNYTTEKTLNITAITPQ--SAAPGEQITLTSQDFXXXXXXXXXXXNIDCSIDSTSGENVVCTIGEETRGGQQDVIAHVQGMGNAYPI-----KFEVAIVITSISPSTLGTNGGVDIEINGKGFGKDGQELEIQLKMGSDRHDCNIHCYLKDCGPTRTYCRTPVLVDGSAELEASINGSTYTYPHVITVGIGSDPIVNTLSFQKASVKGGQKLSIAGSSF----SEDSKVNVDTKECTIVTASTSHIECTLPENEPGVKKCAV-VRSDGFSSTEFDM----EYVLSLTSVSPNKGSYAGGSILTITGEGFGTVDSDVEVRVGQKKCEILTISDTTITCRQPPVTRTVQVGNSGQHETFGIGYKWSKENINILTGDTVEWSWGYSP-ESGVTSGIYP-SDPDDILSYDASNFYC--QPSQSGTCSKRFDFEGDYGFTSGTL-KGYGFSFGGNIVVIERTSNVVEDILVLVKG----------------------------------YESTNTLPFTYRDDRTPKITSIEQDQSTGLMHRLPSQRIKINGVGFSSTRSKNNVKFGSHLCDVKSASATSLECDMDLTSEPPMDILLPVSLLVEGKGDALVRIRSDLNYSVVFQHEVSSISPLRGSEQGRTKL 2046
L+ AL+ + G ++VT G C G W + ++S G L++ S + ++ V ++GG+ GDLL+ +PQV V + G+ + CS G C + + + T + AI+P S G +T+ F + V+VG + CS+ S + + C I + G V + +G A + F I+ I P + GG + ++G GF ++ + L +G++ C + + R CRTP +G+ ++ + NG T + PI+ S + ++ G L+I G +F +++ V V K C I+ + + I C LP+ PG V VR+ GF+ST + +YVL +TS+ P +GS GG+ +TI G GF T+ ++ V +G C + + S+ I C ++ N+G+ G+GY WS +N+ GDTV W W P G+ I+ S P ++ YD F Q S SG+ S +F G + ++SG + + + G I V+ + + L + + +++ L F +P I++I STG ++ L I I G GFS+ N V GS+ C V+ +S S+ C +D + + I V+L V G A+ + ++ + V + + P GS G T +
Sbjct: 959 LQFALQSLEGMGRISVTREGTCAGYAWNIKWRSTCGKQNLLQINDSNIIGEKANMTVTRIKEGGLFRQHVLGDLLRTPSQQPQVEVYVNGIPAKCS-GDCGFTWDSNITPLVLAISPSQGSYEEGTILTIVGSGFSPSSAVTVSVGPVGCSLLSVDEKELKCQILNGS-AGHAPVAVSMADVGLAQNVGGEEFYFVYQSQISHIWPDSGSIAGGTLLTLSGFGFNENSKVL-----VGNET------CNVIEGDLNRITCRTPKKTEGTVDISVTTNGFQATARDAFSYNCLQTPIITDFSPKVRTILGEVNLTIKGYNFGNELTQNMAVYVGGKTCQILHWNFTDIRCLLPKLSPGKHDIYVEVRNWGFASTRDKLNSSIQYVLEVTSMFPQRGSLFGGTEITIRGFGFSTIPAENTVLLGSIPCNVTSSSENVIKCILHSTGNIFRITNNGKDSVHGLGYAWSPPVLNVSVGDTVAWHWQTHPFLRGIGYRIFSVSSPGSVI-YDGKGFTSGRQKSTSGSFSYQFTSPGIHYYSSGYVDEAHSIFLQGVINVLPAETRHIPLHLFVGRSEATYAYGGPENLHLGSSVAGCLATEPLCSLNNTRVKNSKRLLFEVSSCFSPSISNIT--PSTGTVNEL----ITIIGHGFSNLPWANKVTIGSYPCVVEESSEDSITCHIDPQNSMDVGIRETVTLTVYNLGTAINTLSNEFDRRFVLLPNIDLVLPNAGSTTGMTSV 1677 The following BLAST results are available for this feature:
BLAST of TCONS_00054127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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