TCONS_00054130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054130
Unique NameTCONS_00054130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054130 ID=TCONS_00054130|Name=TCONS_00054130|organism=Clytia hemisphaerica|type=transcript|length=715bp
TCTTCTTCTCTATCTAGTTTCGTACTCATCATAAATTACAAATGTCGCGC
TATTTATATATCCACGTGACCCTACTGGTCACGTGGTCAAACTGTCAATC
ATAATTTCTATTCCACGACATTCCCCCCGAAAATATAAATCACAACACTC
ACCCTGCCAAAATAATCTAAGTTCCTATAAAAAGTGTAACAAAATGTTCT
AATAAATCAAGTAAAATCCTAGTTCATAGAGCGTTCATAAAGCAGGTGAG
GTCTAAATACAAATACGCCCTTTTGACGTCATTCTATTGATTCATTATTC
ATTCTGTAAATATCTCTCTCTGGTAAACAAAGTTCCATGTGTTCGAAAAA
AATTCCAgaggaattttttgaaaatgttttcttgcGTAAACAAGTCTCCT
TTAGCAGAATCTCTCAATAATTTCCAAAGTAAACTTCTTCAAAGATCCAG
CAAAAAAGACTCTAAAGTTCGACGTTTTCCCAAACAAATCTCCAGTTCCA
GAAAAGTTTCCCAATTTTGACGATTCAAAATGTCTTGCTTTCTAAATACG
TACAATTCTCAACGTTCAAGTAACCAATTTTCGATATATTATTAGTCGTA
GGggccaaatttccaatggggcCGAGAAAATATCAAACTTTGTTCCCGTT
CGTTAGAAGTCGTAAATCTCAAATTCTCAATCAAGTCTGAAGTATCCAAA
TCATGTGTAACAATG
Run BLAST on NCBI

transcript from alignment at scaffold_24:82430..83144

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054130 ID=TCONS_00054130|Name=TCONS_00054130|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at scaffold_24:82430..83144 (Clytia hemisphaerica)
CATTGTTACACATGATTTGGATACTTCAGACTTGATTGAGAATTTGAGAT
TTACGACTTCTAACGAACGGGAACAAAGTTTGATATTTTCTCGgccccat
tggaaatttggccCCTACGACTAATAATATATCGAAAATTGGTTACTTGA
ACGTTGAGAATTGTACGTATTTAGAAAGCAAGACATTTTGAATCGTCAAA
ATTGGGAAACTTTTCTGGAACTGGAGATTTGTTTGGGAAAACGTCGAACT
TTAGAGTCTTTTTTGCTGGATCTTTGAAGAAGTTTACTTTGGAAATTATT
GAGAGATTCTGCTAAAGGAGACTTGTTTACgcaagaaaacattttcaaaa
aattcctcTGGAATTTTTTTCGAACACATGGAACTTTGTTTACCAGAGAG
AGATATTTACAGAATGAATAATGAATCAATAGAATGACGTCAAAAGGGCG
TATTTGTATTTAGACCTCACCTGCTTTATGAACGCTCTATGAACTAGGAT
TTTACTTGATTTATTAGAACATTTTGTTACACTTTTTATAGGAACTTAGA
TTATTTTGGCAGGGTGAGTGTTGTGATTTATATTTTCGGGGGGAATGTCG
TGGAATAGAAATTATGATTGACAGTTTGACCACGTGACCAGTAGGGTCAC
GTGGATATATAAATAGCGCGACATTTGTAATTTATGATGAGTACGAAACT
AGATAGAGAAGAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034153XLOC_034153Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054130-exon-scaffold_24-1491911889:82430..83144TCONS_00054130-exon-scaffold_24-1491911889:82430..83144Clytia hemisphaericaexon
TCONS_00054130-exon-scaffold_24-1510915933:82430..83144TCONS_00054130-exon-scaffold_24-1510915933:82430..83144Clytia hemisphaericaexon
TCONS_00054130-exon-scaffold_24-1575043694:82430..83144TCONS_00054130-exon-scaffold_24-1575043694:82430..83144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:82430..83144 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.76748	3.2687	1.00128	0.908489	22.1322	15.5468	23.8235	18.6609	12.6304	14.6971	26.9441	10.2944	11.2005	11.7131	35.5242	35.1622	26.2688	24.0889	14.7642	17.1622	45.4205	39.7601	33.0209	25.3985	7.67985	6.91476	78.3127	61.249	39.6226	37.0762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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