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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054132 ID=TCONS_00054132|Name=TCONS_00054132|organism=Clytia hemisphaerica|type=transcript|length=1509bp
CTTCCAGAATTTCAAAAGGTCAACAAAAAATTTAGTTACTTGGTACAAGA
AAACCGGTCAATATCAAAAATAGACAAATatttcactccattaagaatta
gggaaaaaggttaaaataccaaacaatcaaatttgggaaaacaacaaaag
aaaacagcATACAGTAGTAGATAGGTTTTGgtgcaaacaaaagaaaatcg
acTTTATCAAAGTTTGCTTCAAATAAATTGTTAGTTCACACTTTTTGGTA
CATTGCCCTTGAGTGAAAAAGATGATTGAAAAAATACCTTGCGGGAATAA
TAGTTCTGAGTGTTAATTAATATTACAAAGCCTTCATCtgctcaaattat
ttttcaaaatcttttttatttattattttcgattttattttttgcactgA
AATACTGGAAATCAGCTTTAAACCATACatattgaaaggattgcaagaTT
TCACTGTAAATTGACTAAAAAGCCATGACATAATTGACAATGTATTCAAA
AAATGTTCCTGCAAAAGGAATGTCCTGACTGTCAATTTATTTGAAACAAA
CCTTAAAAGCATTTAAACACAAGCATCAAGTCTTTTTAGCGTTCAGAAAA
TGATAACAAAATTTATGCATAAAATTCCTCAcgatttttgccacttttaa
aacaaattattttgatctatttttcagaattaggacatttattgaatatt
aaaataatttttcaactaTAAAAGTTTCAGTTTCAGAGAAACCAAAACCA
TGAGGATTTTACACAGAATTTGTACCATTTTTAAACCACTAACAATAAAC
CTTATTCTACCCTGAAAGCTGTTTTCTCAGTGCTGGTTTTCCCTTATCAT
CaatatttgttttattgttCTTCTTAAGTTTAATGATCGTAACCGAAGCC
TTAATGAAAGCATTAGCTCGAACATTGGTCCATATCTTGAAGACAGCACT
CCTCAAATAGTTGGAGAGAGAGTCACTTAAATCTTTTGTCAAAGAGTCCC
ATGACATTCTCACAAGACTACTCTTgtccattttctcaaaaattaaaggC
CTTAAATCCTCTCCAGCATAATGCACCATCAAATTTCTGTTTAGAACAGT
ACGAATAACATTTTCCAAACGGCGAATGAAAATGTAAAACTCATCATTGA
TGACATATGCTCCTCCACGGTTGATCTTTTCAGTCCACGAACGAGTGTAT
TCTAGGAAAGGGATAACTTTCCCTCCTTGTTCTTGACTCCAGCTATGGAG
CACTAGCAACAATGCAGTTTTAGAATCTGATTCCTTCCTATCTTCAAGCT
TTTTCAAAAGTACATATGGGATGTAGCCTGCAACGTATCGCAATATATTC
TCCTCCTGGAGTGTAAGTTTCAAACTGAGTGCTTTTGTTTCAGGCCTGTT
TTCAACAAGATTATTCCGATAATTCCAGATCTGTTTGTGAAGCTTGTGCA
GGATGTAATGGAGTAAAATTCGAAGTTCTTTGCTCTCTGGAAAGTCCTTG
AATATTTGT Run BLAST on NCBI protein sequence of TCONS_00054132-protein >TCONS_00054132-protein ID=TCONS_00054132-protein|Name=TCONS_00054132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
QIFKDFPESKELRILLHYILHKLHKQIWNYRNNLVENRPETKALSLKLTL
QEENILRYVAGYIPYVLLKKLEDRKESDSKTALLLVLHSWSQEQGGKVIP
FLEYTRSWTEKINRGGAYVINDEFYIFIRRLENVIRTVLNRNLMVHYAGE
DLRPLIFEKMDKSSLVRMSWDSLTKDLSDSLSNYLRSAVFKIWTNVRANA
FIKASVTIIKLKKNNKTNIDDKGKPALRKQLSG Run BLAST on NCBI transcript from alignment at scaffold_24:95068..96576 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054132 ID=TCONS_00054132|Name=TCONS_00054132|organism=Clytia hemisphaerica|type=transcript|length=1509bp|location=Sequence derived from alignment at scaffold_24:95068..96576 (Clytia hemisphaerica)
ACAAATATTCAAGGACTTTCCAGAGAGCAAAGAACTTCGAATTTTACTCC
ATTACATCCTGCACAAGCTTCACAAACAGATCTGGAATTATCGGAATAAT
CTTGTTGAAAACAGGCCTGAAACAAAAGCACTCAGTTTGAAACTTACACT
CCAGGAGGAGAATATATTGCGATACGTTGCAGGCTACATCCCATATGTAC
TTTTGAAAAAGCTTGAAGATAGGAAGGAATCAGATTCTAAAACTGCATTG
TTGCTAGTGCTCCATAGCTGGAGTCAAGAACAAGGAGGGAAAGTTATCCC
TTTCCTAGAATACACTCGTTCGTGGACTGAAAAGATCAACCGTGGAGGAG
CATATGTCATCAATGATGAGTTTTACATTTTCATTCGCCGTTTGGAAAAT
GTTATTCGTACTGTTCTAAACAGAAATTTGATGGTGCATTATGCTGGAGA
GGATTTAAGGcctttaatttttgagaaaatggacAAGAGTAGTCTTGTGA
GAATGTCATGGGACTCTTTGACAAAAGATTTAAGTGACTCTCTCTCCAAC
TATTTGAGGAGTGCTGTCTTCAAGATATGGACCAATGTTCGAGCTAATGC
TTTCATTAAGGCTTCGGTTACGATCATTAAACTTAAGAAGaacaataaaa
caaatattGATGATAAGGGAAAACCAGCACTGAGAAAACAGCTTTCAGGG
TAGAATAAGGTTTATTGTTAGTGGTTTAAAAATGGTACAAATTCTGTGTA
AAATCCTCATGGTTTTGGTTTCTCTGAAACTGAAACTTTTAtagttgaaa
aattattttaatattcaataaatgtcctaattctgaaaaatagatcaaaa
taatttgttttaaaagtggcaaaaatcgTGAGGAATTTTATGCATAAATT
TTGTTATCATTTTCTGAACGCTAAAAAGACTTGATGCTTGTGTTTAAATG
CTTTTAAGGTTTGTTTCAAATAAATTGACAGTCAGGACATTCCTTTTGCA
GGAACATTTTTTGAATACATTGTCAATTATGTCATGGCTTTTTAGTCAAT
TTACAGTGAAAtcttgcaatcctttcaatatGTATGGTTTAAAGCTGATT
TCCAGTATTTcagtgcaaaaaataaaatcgaaaataataaataaaaaaga
ttttgaaaaataatttgagcaGATGAAGGCTTTGTAATATTAATTAACAC
TCAGAACTATTATTCCCGCAAGGTATTTTTTCAATCATCTTTTTCACTCA
AGGGCAATGTACCAAAAAGTGTGAACTAACAATTTATTTGAAGCAAACTT
TGATAAAgtcgattttcttttgtttgcacCAAAACCTATCTACTACTGTA
Tgctgttttcttttgttgttttcccaaatttgattgtttggtattttaac
ctttttccctaattcttaatggagtgaaatATTTGTCTATTTTTGATATT
GACCGGTTTTCTTGTACCAAGTAACTAAATTTTTTGTTGACCTTTTGAAA
TTCTGGAAG Coding sequence (CDS) from alignment at scaffold_24:95068..96576 >TCONS_00054132 ID=TCONS_00054132|Name=TCONS_00054132|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_24:95068..96576 (Clytia hemisphaerica)
CAAATATTCAAGGACTTTCCAGAGAGCAAAGAACTTCGAATTTTACTCCA
TTACATCCTGCACAAGCTTCACAAACAGATCTGGAATTATCGGAATAATC
TTGTTGAAAACAGGCCTGAAACAAAAGCACTCAGTTTGAAACTTACACTC
CAGGAGGAGAATATATTGCGATACGTTGCAGGCTACATCCCATATGTACT
TTTGAAAAAGCTTGAAGATAGGAAGGAATCAGATTCTAAAACTGCATTGT
TGCTAGTGCTCCATAGCTGGAGTCAAGAACAAGGAGGGAAAGTTATCCCT
TTCCTAGAATACACTCGTTCGTGGACTGAAAAGATCAACCGTGGAGGAGC
ATATGTCATCAATGATGAGTTTTACATTTTCATTCGCCGTTTGGAAAATG
TTATTCGTACTGTTCTAAACAGAAATTTGATGGTGCATTATGCTGGAGAG
GATTTAAGGcctttaatttttgagaaaatggacAAGAGTAGTCTTGTGAG
AATGTCATGGGACTCTTTGACAAAAGATTTAAGTGACTCTCTCTCCAACT
ATTTGAGGAGTGCTGTCTTCAAGATATGGACCAATGTTCGAGCTAATGCT
TTCATTAAGGCTTCGGTTACGATCATTAAACTTAAGAAGaacaataaaac
aaatattGATGATAAGGGAAAACCAGCACTGAGAAAACAGCTTTCAGGGT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054132-exon-scaffold_24-1491911889:95068..96576 | TCONS_00054132-exon-scaffold_24-1491911889:95068..96576 | Clytia hemisphaerica | exon |
| TCONS_00054132-exon-scaffold_24-1510915933:95068..96576 | TCONS_00054132-exon-scaffold_24-1510915933:95068..96576 | Clytia hemisphaerica | exon |
| TCONS_00054132-exon-scaffold_24-1575043694:95068..96576 | TCONS_00054132-exon-scaffold_24-1575043694:95068..96576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:95068..96576 . |
Blast
The following BLAST results are available for this feature:
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