TCONS_00054139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054139
Unique NameTCONS_00054139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length177

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054139 ID=TCONS_00054139|Name=TCONS_00054139|organism=Clytia hemisphaerica|type=transcript|length=177bp
aaacagCGTAACTCTTATCAAAAAACACGAACACGGTAAAGGCTTGGTCG
AGGAAAGCACGATGGTGTCAATCctattaaaaatattaaatcaaAAGAGT
ATAAAGAATTTAAACTACTgaaagtatgaaaagtaaaacACCCGTCtgca
aaaaacaaaatttaaaactgGGAGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_240:18399..18575

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054139 ID=TCONS_00054139|Name=TCONS_00054139|organism=Clytia hemisphaerica|type=transcript|length=177bp|location=Sequence derived from alignment at scaffold_240:18399..18575 (Clytia hemisphaerica)
TGACTCCcagttttaaattttgttttttgcaGACGGGTgttttacttttc
atactttcAGTAGTTTAAATTCTTTATACTCTTttgatttaatattttta
atagGATTGACACCATCGTGCTTTCCTCGACCAAGCCTTTACCGTGTTCG
TGTTTTTTGATAAGAGTTACGctgttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034162XLOC_034162Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054139-exon-scaffold_240-1491911889:18399..18575TCONS_00054139-exon-scaffold_240-1491911889:18399..18575Clytia hemisphaericaexon
TCONS_00054139-exon-scaffold_240-1510915933:18399..18575TCONS_00054139-exon-scaffold_240-1510915933:18399..18575Clytia hemisphaericaexon
TCONS_00054139-exon-scaffold_240-1575043694:18399..18575TCONS_00054139-exon-scaffold_240-1575043694:18399..18575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_240supercontigscaffold_240:18399..18575 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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