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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054145 ID=TCONS_00054145|Name=TCONS_00054145|organism=Clytia hemisphaerica|type=transcript|length=413bp
TTCAGCAACTTCAAAAAACAAAGTAAACTATTTAAATtgccaaaaaaaga
agaagaatgaAAATGGAACTACTCTGCCCGAGAGGATAGCATTTAAGTTT
GAAACTTGGTAAAAATGGACGATGAAGTTTTACTGGTTCGTACTCAGCCG
AAAAGAGTTCTACAACAAAATGTGGCAAAGAAATATGTTTTGAAGAAGGT
GGACCAGTGGGGATTTGAGAAAACTTGGCTAAACAAAGAAATAGGTTATG
GTgtaaaaacacaaaagaaattCATCAAAGGGGATTTTCTATTAGAATAT
CGAGGTGTTTTGCGTTTAAAGGCTGATATGATTGACATCGAAAGACATTA
TGATGAAATTGGAGCTGGGAGCTTCGTCTTTGACTTCAAACACAATGAAA
TTTCTTATTGGTA Run BLAST on NCBI protein sequence of TCONS_00054145-protein >TCONS_00054145-protein ID=TCONS_00054145-protein|Name=TCONS_00054145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MDDEVLLVRTQPKRVLQQNVAKKYVLKKVDQWGFEKTWLNKEIGYGVKTQ
KKFIKGDFLLEYRGVLRLKADMIDIERHYDEIGAGSFVFDFKHNEISYW Run BLAST on NCBI transcript from alignment at scaffold_241:55494..57238+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054145 ID=TCONS_00054145|Name=TCONS_00054145|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at scaffold_241:55494..57238+ (Clytia hemisphaerica)
TTCAGCAACTTCAAAAAACAAAGTAAACTATTTAAATtgccaaaaaaaga
agaagaatgaAAATGGAACTACTCTGCCCGAGAGGATAGCATTTAAGGTC
AGTTATTTAGTTTCTCAAGGTAACACCCGATCCAATGAAAAAACCTCTGT
TCTTTTGCAGCCCGCTTGTGTAACGAAATTTGTTTATGTGGATGAGCTAC
CATAAGCTTTCATTTAAAACATTGATATTGCAAAAAGGACGAAGAACAAT
TTGAGTCTCCTCTTGTATGAAAACTTCATCAttgtaataaaaaatgtatt
tttcttcaGTTTGAAACTTGGTAAAAATGGACGATGAAGTTTTACTGGTT
CGTACTCAGGTATGTATATATAAGATGTGAGAAATTCTGAATTTCTGTCC
AACAATCTTCCATCAGAGATGGGAAGCATAATGCATTTCGTTCTTATTAC
GACTCGTAAGAACTGCATACATATTGATTTTGGCACCACTGGACagtgaa
aaaaattcgaaatagaGGCCactgaaatatttcaaatatcaaGATAATGG
AGATCATATTTTGTATTATTTGTTGTATAGTTTAGTTAATTTCAATTTCG
ACTTTCTTTTCAAGCCGAAAAGAGTTCTACAACAAAATGTGGCAAAGAAA
TATGTTTTGAAGAAGGTGGACCAGTGGGGATTTGAGAAAACTTGGCTAAA
CAAAGAAATAGGTAAATTATTGTTGTATACCTTCCGTAAAAATTTACGTT
GTTTATTATTATGCCCATCGaaaatttgttatatttttggCAACATTGTA
ATTTGTAATTTGCATGTAACTTAGCATCGTCACATCGAAATCGTTTGAGA
GTTTTAAAGTGTATTCCAAAAGCTTGTGGACActttacttttttaaactt
ttctcgACACCCATTTATGCTGTATTAAAAAGTAAATTTTTAGCAGAATA
TTTTAATTGATTAATTTATTTTTGAAAATTGAAAAATGAAGAGGAGAAAA
ATGAAGATTTTTTCGGCTGGGCCACAAATATCGAATTGATACTTTTTAGA
ATATTTAAACTTCGCTGATTCCAAATCTGTGCTCATATTTTTTCATATCT
TTCTTGGATCAAAGGCTACAGCCCATCAAAGTGGGTCCACTTTGGCCCTT
TTTGACTGTTTTATCCTAGGGAATTTGCTTTTCTAATCTCTTGAAGATTA
GAGTCGCACTTCTTCCAAACAGATTTTATCTTTCTGATCATTTCATCTTC
TGAGTTAAATGGGTTGTTGAGTCTACCTTCATACACTTTTTCTTTTACTC
TACAAAAGTGTATCTTTTGAATTGAATACATGTACATGTACatatatttt
gaaaacttcaGCTTCGAAAAGTCAAAAGTAGCCAAAAATATGAAAGAGTc
agatttttttagaattttttgttttttcgtcGCTCGACGTTTTTAACACA
ACTAGAGCATAGTCCCTCAGTCTTTCTTACAACAAGGTCTCGATGAATTT
TATGGTTTACTTTTTGTTCTATTCAAACAAACTTATGATCATTACCTCGA
TTGCATTTTCACTTATCACATTATAGGTTATGGTgtaaaaacacaaaaga
aattCATCAAAGGGGATTTTCTATTAGAATATCGAGGTGTTTTGCGTTTA
AAGGCTGATATGATTGACATCGAAAGACATTATGATGAAATTGGAGCTGG
GAGCTTCGTCTTTGACTTCAAACACAATGAAATTTCTTATTGGTA Coding sequence (CDS) from alignment at scaffold_241:55494..57238+ >TCONS_00054145 ID=TCONS_00054145|Name=TCONS_00054145|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at scaffold_241:55494..57238+ (Clytia hemisphaerica)
ATGGACGATGAAGTTTTACTGGTTCGTACTCAGCCGAAAAGAGTTCTACA
ACAAAATGTGGCAAAGAAATATGTTTTGAAGAAGGTGGACCAGTGGGGAT
TTGAGAAAACTTGGCTAAACAAAGAAATAGGTTATGGTgtaaaaacacaa
aagaaattCATCAAAGGGGATTTTCTATTAGAATATCGAGGTGTTTTGCG
TTTAAAGGCTGATATGATTGACATCGAAAGACATTATGATGAAATTGGAG
CTGGGAGCTTCGTCTTTGACTTCAAACACAATGAAATTTCTTATTGGATG
GACGATGAAGTTTTACTGGTTCGTACTCAGCCGAAAAGAGTTCTACAACA
AAATGTGGCAAAGAAATATGTTTTGAAGAAGGTGGACCAGTGGGGATTTG
AGAAAACTTGGCTAAACAAAGAAATAGGTTATGGTgtaaaaacacaaaag
aaattCATCAAAGGGGATTTTCTATTAGAATATCGAGGTGTTTTGCGTTT
AAAGGCTGATATGATTGACATCGAAAGACATTATGATGAAATTGGAGCTG
GGAGCTTCGTCTTTGACTTCAAACACAATGAAATTTCTTATTGGATGGAC
GATGAAGTTTTACTGGTTCGTACTCAGCCGAAAAGAGTTCTACAACAAAA
TGTGGCAAAGAAATATGTTTTGAAGAAGGTGGACCAGTGGGGATTTGAGA
AAACTTGGCTAAACAAAGAAATAGGTTATGGTgtaaaaacacaaaagaaa
ttCATCAAAGGGGATTTTCTATTAGAATATCGAGGTGTTTTGCGTTTAAA
GGCTGATATGATTGACATCGAAAGACATTATGATGAAATTGGAGCTGGGA
GCTTCGTCTTTGACTTCAAACACAATGAAATTTCTTATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054145-exon-scaffold_241-1491911889:55494..55590 | TCONS_00054145-exon-scaffold_241-1491911889:55494..55590 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1510915933:55494..55590 | TCONS_00054145-exon-scaffold_241-1510915933:55494..55590 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1575043694:55494..55590 | TCONS_00054145-exon-scaffold_241-1575043694:55494..55590 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1491911889:55803..55852 | TCONS_00054145-exon-scaffold_241-1491911889:55803..55852 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1510915933:55803..55852 | TCONS_00054145-exon-scaffold_241-1510915933:55803..55852 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1575043694:55803..55852 | TCONS_00054145-exon-scaffold_241-1575043694:55803..55852 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1491911889:56108..56204 | TCONS_00054145-exon-scaffold_241-1491911889:56108..56204 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1510915933:56108..56204 | TCONS_00054145-exon-scaffold_241-1510915933:56108..56204 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1575043694:56108..56204 | TCONS_00054145-exon-scaffold_241-1575043694:56108..56204 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1491911889:57070..57238 | TCONS_00054145-exon-scaffold_241-1491911889:57070..57238 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1510915933:57070..57238 | TCONS_00054145-exon-scaffold_241-1510915933:57070..57238 | Clytia hemisphaerica | exon |
| TCONS_00054145-exon-scaffold_241-1575043694:57070..57238 | TCONS_00054145-exon-scaffold_241-1575043694:57070..57238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_241 | supercontig | scaffold_241:55494..57238 + |
Blast
The following BLAST results are available for this feature:
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