TCONS_00054148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054148
Unique NameTCONS_00054148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054148 ID=TCONS_00054148|Name=TCONS_00054148|organism=Clytia hemisphaerica|type=transcript|length=1789bp
ATCAAAATCTAAGTCAGACTTTCCTCtaaacgataaaaaaagaatgggAG
TAAAATCATTACTCGATGTCTGAAAATAGCCCGGCAAACTCTTTAGGTGT
TACTTAACGACGAAAGGCATCCATTACTCCTGCTGAAAACTCAGggCCTA
TAATTACTGAAGGTGACTATGACGATGTAAATGGTGCAGGGTCCTCCAAG
GATAGTCAATCTGGGTCTACAATTACTAAAGAAGACTACGATGATTTAAA
TGATACAGGGCCCACTGAGGAGGATGAATCTGACGTGACTGGgaagaaga
agagaaaaagaCCTGCAGAAAAAGGACAAAACTCCGCAAAAAAGCCATCA
CGAGAAGTGCAAAAACTGGTGGACAATTTAACAAGAAATGAAATAGTGGA
TGGTAAAAGGACACGTTGATTCAGGTTGATTGGTTGATTTATTATTCATC
ATATGTTATGTTCATATTATTTTTTATGGAGTCTATATTTTGTTTGAAGC
CCACTAAAAACATAGTTACTCTGCATCGAGTCTATTCGAGCCTGTACTGC
ACCAACGTTTATTTAAAGTATAACATAAAAAGGCCACGAAAGTGCTCTAT
CTACAGAAATTCTTTTTATTAAAGCTGAAAATACTTTTGGGCAAACTTTA
CTTCAGTCTGATTTCCGAACAATAGCTTGTTTGTTCATTTTATTATTAAT
TTTATGTAAATTAGTTTTGAGTATTTACCCATTTCTGCCCACAAATAAGA
TAAAAAAGTATTCCATAAAATAGAAAAGTTTTATTTTTGACAAAAATTAT
CTCTCAAGGATGTGGAGCCCTTAGCAAAAACTTACTTCTTTTGTTTCAAT
TTTCTGTAGTAAATCCTTTTGCAAAAATCTTATTTCATGCTAAGGCAGAT
TAGTCTTTTGTTACCTTTGGATAAACTTTACTCCTGTCTGATTTCCAGGG
TAGGTCCCAATCAAACTGGTTTTCAAAGTTTATCTCTCGCTCATTTTAAG
TATTTTACCCTTCTTTGGATATTTGACACTGGAGAGGATTTTTTTAACTT
TTGATATTTTTATGTTGTATAGTTTTATTTGAAAGGCAGCATTTTAAGTT
TCTGATTTATTTTTTAATTTTAGCTGACATTTTTATGTTGTATAATATTT
GAAAATAGCATTTTAATCTTTTGATTTATTTTTGGACGTACCCGTACCGT
CCTATAAATTAACCTTTTCGTTAGTTCGTTCGCTAGTATCCAGAGATTGA
TTCATTATTTTTTGCACACAGATGGGTATTCAGAAACCCTCGAATGTGAC
GGAGTCCGATTTTAGAGAAAAAAGATTTTCGCGGTCGATTTTGGCCAAAA
AGAGCCCGAACAATAGGTTTTTTGGGGTTTTCTCTTTCCCTGTATAATGG
CTGTAATTGACCTATTAATAAAGCTGTGTTCGTTCATTTTTATTTATTTT
TTATTTCATATTTAGAGCATTCTTCTAGGAATTTCACATTTAGGTTGTTT
ATCAAATAGAGAGTTATTTTAACGATATTACTAAATCAATAGTCAAATGT
TTTTCTCCCAGATACTTCGGTTACAATGCTTGCTTAAAGGATGCTTATAA
TTTGACAAAGAAACGGATGACGGGTGTCTCACGAAAAAGGGGGACCAAAA
GGGCTATAAAAGCCTATACTGGCATGAAAAACAAGCAACCCTGCATTTTC
ATAGGCTCGAGGTAATGCCTAGCATATGCTTAAATTTTTGCCAAATTTGA
GCCTAGATATGCTTACCTTATTGGTATTACAAATTTGCG
Run BLAST on NCBI

transcript from alignment at scaffold_241:92309..100853+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054148 ID=TCONS_00054148|Name=TCONS_00054148|organism=Clytia hemisphaerica|type=transcript|length=8545bp|location=Sequence derived from alignment at scaffold_241:92309..100853+ (Clytia hemisphaerica)
ATCAAAATCTAAGTCAGACTTTCCTCtaaacgataaaaaaagaatgggAG
TAAAATCATTACTCGATGTCTGAAAATAGCCCGGCAAACTCTTTAGGTGT
TACTTGTAAGTGTGAACGAATATAttgtaataatttcttttctttgtccT
TCTAGTAAttcaaaaacatcaatttttttcaacattttttttcatcagTT
AATAAGTTTTTCTATTTAAATCTGCATTAGAGAAGGTGCGGCAAATATTG
GAGGGCGGCGCTTATTAGACTTAATATTCATCCGCAGCTTGGATTAAAAT
TTTAAAGGGTTCTCAGATCCTTCCTTCTAAGAAGCCCTGGGGTTTACAGC
GCAATGCAGCGGAGCATCAGGATCTGCTTGGAGATTATGTTGTTCCAAAA
AAGTATCGCTTTTTGTGTTTAGAACGACGAAAGGCATCCATTACTCCTGC
TGAAAACTCAGGTAAGAATTTCGGTTTCTTTATTAAGATTGACGCATTCA
AATCAAATTTAACCGTTATGGGGTACTAATAAACTTCATGACCAAAACGA
AATATACAAAAGTTTATAATGCAAGAAACGCTTAAAAGTCAAGGAGGACT
TTTTCTACCTGCTTCTGAGACGGAATGATTTTAGTCTGTTTCTCTCGAGA
TGGGCTctttacattttcaaatttgtgCAAAATGGCTTCataagtttttt
ctgacttttattATTgactatttttgttattttccatGCTTTCATCTACC
TAGtataatattattattataatagcCATGTGTGTCTGAAGCCTTTTTGC
AGCGTTTTGATTTTCACTAGCGATTTTAGATTTCCNNNNNNNNNNNNNNN
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NGGTATTatgaaaactttataaagtgCCTCTGCATTCTTCAGATTAAGGa
agatttttttcgaaagtaCACTCAGActtcattttcacttttctcaACAA
ACATGTCTTTCATTCATGTCTTTTAAAGTCACACTTAATTAAATGTCTAC
AcacgatggctagccacgatggctagAGAATCCTACTTTAATTTTGAAGC
TCCCTGCAAACAATTTATTTGTGGTGAAATATAGCTCTGCAAGGTCTGCT
TCTTGACTTTAATTCGATCATTAATTTAGTAAAAGTAATGGATCTTTGTT
GCACGCTAGACCTTTGAAAAGATTTGCGTAAATCGGCTTCTTTGACCAAT
CTAAGTATAATTGCAGCTCAATCGAACTGTAATCGAAGTGTAATCAAAGT
AATCGAGCATCAATCGATTAAATACAATTTAATCAAATACCAATCAAATC
CAATCAAGTGTGGAAAAAAGTAGAAGAATTATAGAATTAATAATATAGTT
ATAATTATAATAGAATTAAATTCATATTAATATAATATTAGTAATAAAAA
CTTACTTTCTTTCTCACCTTATTTCAGATAGTAAATTTCTAAGTCCTTAA
TGAACTTCTTAAATTCCTCCTTGATTTAATCCTTAGTGTACATCCAACCT
CTTCCTTTGCAATGCGATTCATCAAAACTTTAGTTTTTTATAGTTAGCTA
CTTTGCCAAATAGTTCAGAGCTTAGTCCACCATGGGGTGAATTTTCATTG
TTAGGTCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNCTGTTTTGAAGATACTGCTAAGAGAGTGTTACTACAGCG
CACAGATGATTTACATTGACTGGGTGGCTTGTATATCaatgtcaaaatat
ttaaataatatCATGGTGGCCAGAATTCTTTTAATATTAATCTAAGAGGA
TAGTATAATAGAGCTGGCAAATTAAGTGTTGATAGTCTTGATTGAAAAAC
TGACTCAGAAAATAATCAATCAAAttgcttatttcttttttcagggCCTA
TAATTACTGAAGGTGACTATGACGATGTAAATGGTGCAGGGTCCTCCAAG
GATAGTCAATCTGGTAATTATATTGATATTTCTGAAATAAATTGTTCTGA
GTTGATGTAATATTTAACGAAGCAAAGCCggtttgaatgtattttttatt
ctatacctatgcaaaaatcaaaacaaattatgtACGTGATCCAGTGATTT
ACATAAAACGCTCACATAATTTAGCATTGTaatcttttgttttagtttGT
AATGATTTTCTCGATTAATCAAATCATGAAATTTGTTAATGAAATTGGCA
AAGAATTATACTAATAACTTGAAATAGattggctgtttttgcctacaagT
ATAGAATAACAATACCATTTATACCATTTTTATTCATGTTTTCAGGGTCT
ACAATTACTAAAGAAGACTACGATGATTTAAATGATACAGGGCCCACTGA
GGAGGATGAATCTGGTAATTATTGATATTTCATTGCATTAAAACAAGCAC
CTAGCTTTTGATTTTAAACCATCCCAAAAGTATATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATAcagacca
gtgattttcctcagaaaatacagaccagtgattttccttggaaactACGG
Tctagtgattttccttggaaactacggtctagtgatcttccttggaaaat
acgcaataactaattttccttggaaaatacgggaCAACTAGTTTTCCtta
aattaattattttaatcttcttatCTTCTAATCTTCCTTATCATttcggg
ctgaccttccagcacagctggtttatttcattaaaattcaaCTTGGCTGA
TTTCAGATAATGTATttagaattttaattttttttcagcctCTAGGGGAA
GCATGGAGGCTTTGTGGCTGTAGCCTCATTTTTTAGTAAATACACTTTCT
CTCAATTTGCTAAAGAAAATCAACTCATAACTTTTATGATTGTTTTGCCC
TCtctctctagatcaaaagttacagcgACAAATTTGCCTGCTTGTCAATT
TGCCCACTTCTGGCTGTTTTGGACAGATGTTTCTGACTTTTTATCTAATA
TCTAAAATTTCTAATTTGAgtattttaaagtattttattttcagctctat
tttgcgattttttgggACTTTTTATACTCTTAATAATTCACTTAATAATT
CACAATGAATTATCTTTCCAAATATTTAAATATAGTTTTTACTATGGTTA
GGTCTTAGGACATTGCTATAATGTGGGATTCTTTGGGACTGATTTGAATT
TTACAGGTGACATTTATTGAATTATATAATTCTAAGGTTGATAATGTTGT
GTTTTATAGAAAGTGGTACTAGTTAGCAGGGAGGCATTTTAATTTGTTTC
TAAATTTCGAGTTAAAAATGgttgacattaaaatttgagctCCACTGTAC
CTTTCCAAGTTTTAACAACGAAATGATGAAATTATTTTACATTGTAGACG
TGACTGGgaagaagaagagaaaaagaCCTGCAGAAAAAGGTAAATTATGA
ATTtcgaaattctaaaaaaaattaggaaagtgaGGCTGTCAATATCCCAA
AATATATTGCTCTAGGGGTAGACAACGAGATCGACACAAGATTTTTTCCT
TGACCAAAACAATACCTAGTATACAAAATCTTCTTACAGAATATATGGAA
CATGATTAGAAATTATTAAGTTTACTTGGACGGAGAAGTAAAAACAGATA
CTCATATGCCCAAATTTGTCGGTCAAAAAAAATGATTCGATTTTAAGATG
TAGGAGGTAATAGTAACTGATTCGATAAATTAATAAatcttttccaattt
ttctgttcttcaaaatgactcttcattttctctttttgctttatttataC
TTTAGGACAAAACTCCGCAAAAAAGCCATCACGAGGTAAATATCTGCGTG
GTATCTAACATatcttttgttgaaaacaaGAACTCAATTTAACAGTTGAC
ATAATGTAATCTGCataatttgcataaattatttttagttgTATAGGCAT
GTCCGTAGATATTTCTAGTTTATTATAATTTGCAAATCTGTAGCATGCTC
TTCGATATagattttatgacttttattAAATGTGTAACATTAAAatcttt
atttacaaaaaagaaTATTACGAAACTTGACTTCGAAGAccatttttttt
ctctatttagAAGTGCAAAAACTGGTGGACAATTTAACAAGAAATGAAAT
AGTGGATGGTAAAAGGACACGTTGATTCAGGTTGATTGGTTGATTTATTA
TTCATCATATGTTATGTTCATATTATTTTTTATGGAGTCTATATTTTGTT
TGAAGCCCACTAAAAACATAGTTACTCTGCATCGAGTCTATTCGAGCCTG
TACTGCACCAACGTTTATTTAAAGTATAACATAAAAAGGCCACGAAAGTG
CTCTATCTACAGAAATTCTTTTTATTAAAGCTGAAAATACTTTTGGGCAA
ACTTTACTTCAGTCTGATTTCCGAACAATAGCTTGTTTGTTCATTTTATT
ATTAATTTTATGTAAATTAGTTTTGAGTATTTACCCATTTCTGCCCACAA
ATAAGATAAAAAAGTATTCCATAAAATAGAAAAGTTTTATTTTTGACAAA
AATTATCTCTCAAGGATGTGGAGCCCTTAGCAAAAACTTACTTCTTTTGT
TTCAATTTTCTGTAGTAAATCCTTTTGCAAAAATCTTATTTCATGCTAAG
GCAGATTAGTCTTTTGTTACCTTTGGATAAACTTTACTCCTGTCTGATTT
CCAGGGTAGGTCCCAATCAAACTGGTTTTCAAAGTTTATCTCTCGCTCAT
TTTAAGTATTTTACCCTTCTTTGGATATTTGACACTGGAGAGGATTTTTT
TAACTTTTGATATTTTTATGTTGTATAGTTTTATTTGAAAGGCAGCATTT
TAAGTTTCTGATTTATTTTTTAATTTTAGCTGACATTTTTATGTTGTATA
ATATTTGAAAATAGCATTTTAATCTTTTGATTTATTTTTGGACGTACCCG
TACCGTCCTATAAATTAACCTTTTCGTTAGTTCGTTCGCTAGTATCCAGA
GATTGATTCATTATTTTTTGCACACAGATGGGTATTCAGAAACCCTCGAA
TGTGACGGAGTCCGATTTTAGAGAAAAAAGATTTTCGCGGTCGATTTTGG
CCAAAAAGAGCCCGAACAATAGGTTTTTTGGGGTTTTCTCTTTCCCTGTA
TAATGGCTGTAATTGACCTATTAATAAAGCTGTGTTCGTTCATTTTTATT
TATTTTTTATTTCATATTTAGAGCATTCTTCTAGGAATTTCACATTTAGG
TTGTTTATCAAATAGAGAGTTATTTTAACGATATTACTAAATCAATAGTC
AAATGTTTTTCTCCCAGATACTTCGGTTACAATGCTTGCTTAAAGGATGC
TTATAATTTGACAAAGAAACGGATGACGGGTGTCTCACGAAAAAGGGGGA
CCAAAAGGGCTATAAAAGCCTATACTGGCATGAAAAACAAGCAACCCTGC
ATTTTCATAGGCTCGAGGTAATGCCTAGCATATGCTTAAATTTTTGCCAA
ATTTGAGCCTAGATATGCTTACCTTATTGGTATTACAAATTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034165XLOC_034165Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054148-exon-scaffold_241-1491911889:92309..92413TCONS_00054148-exon-scaffold_241-1491911889:92309..92413Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1510915933:92309..92413TCONS_00054148-exon-scaffold_241-1510915933:92309..92413Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1575043694:92309..92413TCONS_00054148-exon-scaffold_241-1575043694:92309..92413Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1491911889:92731..92769TCONS_00054148-exon-scaffold_241-1491911889:92731..92769Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1510915933:92731..92769TCONS_00054148-exon-scaffold_241-1510915933:92731..92769Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1575043694:92731..92769TCONS_00054148-exon-scaffold_241-1575043694:92731..92769Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1491911889:97153..97221TCONS_00054148-exon-scaffold_241-1491911889:97153..97221Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1510915933:97153..97221TCONS_00054148-exon-scaffold_241-1510915933:97153..97221Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1575043694:97153..97221TCONS_00054148-exon-scaffold_241-1575043694:97153..97221Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1491911889:97554..97622TCONS_00054148-exon-scaffold_241-1491911889:97554..97622Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1510915933:97554..97622TCONS_00054148-exon-scaffold_241-1510915933:97554..97622Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1575043694:97554..97622TCONS_00054148-exon-scaffold_241-1575043694:97554..97622Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1491911889:98706..98747TCONS_00054148-exon-scaffold_241-1491911889:98706..98747Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1510915933:98706..98747TCONS_00054148-exon-scaffold_241-1510915933:98706..98747Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1575043694:98706..98747TCONS_00054148-exon-scaffold_241-1575043694:98706..98747Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1491911889:99114..99143TCONS_00054148-exon-scaffold_241-1491911889:99114..99143Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1510915933:99114..99143TCONS_00054148-exon-scaffold_241-1510915933:99114..99143Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1575043694:99114..99143TCONS_00054148-exon-scaffold_241-1575043694:99114..99143Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1491911889:99419..100853TCONS_00054148-exon-scaffold_241-1491911889:99419..100853Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1510915933:99419..100853TCONS_00054148-exon-scaffold_241-1510915933:99419..100853Clytia hemisphaericaexon
TCONS_00054148-exon-scaffold_241-1575043694:99419..100853TCONS_00054148-exon-scaffold_241-1575043694:99419..100853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_241supercontigscaffold_241:92309..100853 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.578168	0.201929	0.131385	2.14574e-08	0	0	0	0	1.02492	1.36307	1.59302	0.912843	0.693906	0.490215	1.0599	0.925506	1.29641	2.16231	0.856328	0.244874	1.99001	1.03605	1.78729	1.8204	0	0	1.79478	1.53407	3.23698	2.60241
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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