TCONS_00054150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054150
Unique NameTCONS_00054150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054150 ID=TCONS_00054150|Name=TCONS_00054150|organism=Clytia hemisphaerica|type=transcript|length=289bp
ATAACGAATTCAGACAGTAGCAGTAACGATTATTGGAATGATGATGATAT
TAATGATGGAGGATTCGCTTTTGTAGACGCAAATAATGGTCACGAACAAG
CCCAAGAGATATATAAACTTGAACTAACGACGCAAATCTAGTTTATTCCC
TAACACATATGTAGAATACTGGCGGACCTAGACGAATTAAAAGTAAGAAG
AAAAACAATGGAAGCCACTCTGCATGCTTTGTAGGAGCTGCCAAACTTAC
ATTCGAGGTGTCAGTTTTATTGATTAATGTTTACTATTG
Run BLAST on NCBI

transcript from alignment at scaffold_241:3641..3929

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054150 ID=TCONS_00054150|Name=TCONS_00054150|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at scaffold_241:3641..3929 (Clytia hemisphaerica)
CAATAGTAAACATTAATCAATAAAACTGACACCTCGAATGTAAGTTTGGC
AGCTCCTACAAAGCATGCAGAGTGGCTTCCATTGTTTTTCTTCTTACTTT
TAATTCGTCTAGGTCCGCCAGTATTCTACATATGTGTTAGGGAATAAACT
AGATTTGCGTCGTTAGTTCAAGTTTATATATCTCTTGGGCTTGTTCGTGA
CCATTATTTGCGTCTACAAAAGCGAATCCTCCATCATTAATATCATCATC
ATTCCAATAATCGTTACTGCTACTGTCTGAATTCGTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034167XLOC_034167Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054150-exon-scaffold_241-1491911889:3641..3929TCONS_00054150-exon-scaffold_241-1491911889:3641..3929Clytia hemisphaericaexon
TCONS_00054150-exon-scaffold_241-1510915933:3641..3929TCONS_00054150-exon-scaffold_241-1510915933:3641..3929Clytia hemisphaericaexon
TCONS_00054150-exon-scaffold_241-1575043694:3641..3929TCONS_00054150-exon-scaffold_241-1575043694:3641..3929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_241supercontigscaffold_241:3641..3929 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.595377	0	1.70282	0	6.69667	3.68662	2.23645	2.64628	0.587245	0.91479	0.501388	0.538066	1.98856	3.05731	0	0.982211	5.97604	1.87386	0.506206	0.92043	0	0	0.605373	0	1.96009	0.499255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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