TCONS_00054208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054208
Unique NameTCONS_00054208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054208 ID=TCONS_00054208|Name=TCONS_00054208|organism=Clytia hemisphaerica|type=transcript|length=740bp
ATTAATCCAAAAATTTAATTGAACTTAATTGAGGTATGATTTCAATACCA
ATTTTCAGATTTGTGAAATTGAGTATAAATAGGGTAGGTGTTTTCATTTG
AGATCATCACTTCAACTtttgaatcaagttcaagaagatctcaaaacaac
aaaaatgaagaCCATCATCTTGATCGCCATCATCGCTGtTTGCTCAGCTG
AATTCTACTACCCATGTCCTGACAGACTGTGTCATGGTACATCCTTGGGA
TCCATCTTTGGATTAGGAGATAAGCACCGAACACCAGATGTCTTTGTTCA
ATGTGCACCAGGAGCTCATGGAAAGCTCAGAGCTGTTTGCCAAAGATGTC
CACGACACCAAGTATTCAGCCGTAAATTCTCAGTTTGTGTTCGACGTACT
TTTGCTGTGTGCAAAGGAAAACATTGCAAACCACATGCTTTCAAACCACA
TCCAAAACAATgCCCAAAATCATTGTGCGCCGATTACCCACACAGCGACT
ACGTTGTCTTCCGATACCCGCACAAACCAACTTACTACGTCCAATGTACC
GCTGGAAGACCTGTCTGCAGACAATGTCCACATGGATTGATCTTCAACAA
CGACATCAAAGTTTGCGATTTCCCACCAGCCAAGAAGCATtaaacttaaa
actcaaaaacttttACCAATTATTTTTTAACTCTCTGTACATTAGGTtct
ttgtttgataaaaaaacatgCTCAACAAATACTAAAAATT
Run BLAST on NCBI

protein sequence of Incomplete protein sequence

>TCONS_00054208-protein ID=TCONS_00054208-protein|Name=Incomplete protein sequence|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MKTIILIAIIAVCSAEFYYPCPDRLCHGTSLGSIFGLGDKHRTPDVFVQC
APGAHGKLRAVCQRCPRHQVFSRKFSVCVRRTFAVCKGKHCKPHAFKPHP
KQCPKSLCADYPHSDYVVFRYPHKPTYYVQCTAGRPVCRQCPHGLIFNND
IKVCDFPPAKKH
Run BLAST on NCBI

transcript from alignment at scaffold_242:473621..475603+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054208 ID=TCONS_00054208|Name=TCONS_00054208|organism=Clytia hemisphaerica|type=transcript|length=1983bp|location=Sequence derived from alignment at scaffold_242:473621..475603+ (Clytia hemisphaerica)
ATTAATCCAAAAATTTAATTGAACTTAATTGAGGTATGATTTCAATACCA
ATTTTCAGATTTGTGAAATTGAGTATAAATAGGGTAGGTGTTTTCATTTG
AGATCATCACTTCAACTtttgaatcaagttcaagaagatctcaaaacaac
aaaaatgaagaCCATCATCTTGATCGCCATCATCGCTGGTAAGTTTGATC
AAGTGATTAAATCTTCCAATGATTGACTTATGAATTTTTTCCTTGGACgc
gtgattttaaaaataagataaTAAATTTTGTATTGCAAATCAACGATAAG
CTGGACATGGGTCCTGGAAAGGCGTTTGAGCTAGGgggctaatttttttt
tgaaaaattgtcgtCCACCATGATTTGGAGATGCTTGAAGAGACATGATG
AACTGCCTCGAGAGTTTAATTCGATATTTTATATATATCTTgacgttaat
ttttattttcttgtttttttagtTTGCTCAGCTGAATTCTACTACCCATG
TAAgtatttaaatatctttttgcAATATTCTCTTCTATCAGCTTACATCt
aattatcaaaatttggaaatatttggattgaaattttgaatttgcaaatt
ttttacttCTGATGACCTGCGAACCCGGAGGGTACTAGGCTTGCGAGATG
ACAGGTTTTTCCGAGCCATCTGAATTTCAAAAATGCTgtccattttttga
cgtttttgacaTCCTTAAAAGAGACCTTTTAgtctaaatttcaagaattt
atgaccctttggaattcgattttcgattttataAACTTTGGagcccttac
agagactcatttgctttttaatggtttctGTACCCCTTTTAGGGAattcg
agggtgtgaaaaaagATAGtgttatggctcgcacatacccggctccaatt
ttgcctaaatgGTTCCCCCCCGGCAAACAAATGTCTCAAaccttcaaaaa
aaaattaaaatccttCTAGGTCCTGACAGACTGTGTCATGGTACATCCTT
GGGATCCATCTTTGGATTAGGAGATAAGCACCGAACACCAGATGTCTTTG
TTCAATGTGCACCAGGAGCTCATGGAAAGCTCAGAGCTGTTTGCCAAAGA
TGTCCACGACACCAAGTATTCAGCCGTAAATTCTCAGTTTGTGTTCGACG
TACTTTTGCTGTGTGCAAAGGAAAACATTGCAAACCACATGCTTTCAAAC
CACATCCAAAACAATGTAAGTTTCCAACcaatttcaatctttttatttag
gttttgttttttaaacatAGATCATCCTATAAAATGcgctttttcatgaa
aaatcgaagggtccgaaaaattgcattttccaTGGGGTAAATCTGCGATG
TCCAGGGATAAATTTtggtgtccagggggttaaagtGATGATTGTCCATA
GGTATAATCCATGTCCATGatgtgaaaaatcaaaatgtccaggggtaatt
aattgaaaaaataatatatcctccacccccgatgaacggatttttttctg
gaagagcccaatttagtcttttcttctcttttgagaAAGGTCAGCTAAAT
TCttcaagaaatttgaatattccATAGAAGATCAATTGTGCAAACAAAGC
TATGTTTAAAGCTTCACATTTCATATTCAATACTCGCCAATATTAGCTTT
GTCTTTAGTTTTCATTTAAATCATCTCTCATTTcaataattcttttaatt
tcaggCCCAAAATCATTGTGCGCCGATTACCCACACAGCGACTACGTTGT
CTTCCGATACCCGCACAAACCAACTTACTACGTCCAATGTACCGCTGGAA
GACCTGTCTGCAGACAATGTCCACATGGATTGATCTTCAACAACGACATC
AAAGTTTGCGATTTCCCACCAGCCAAGAAGCATtaaacttaaaactcaaa
aacttttACCAATTATTTTTTAACTCTCTGTACATTAGGTtctttgtttg
ataaaaaaacatgCTCAACAAATACTAAAAATT

Coding sequence (CDS) from alignment at scaffold_242:473621..475603+

>TCONS_00054208 ID=TCONS_00054208|Name=TCONS_00054208|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_242:473621..475603+ (Clytia hemisphaerica)
atgaagaCCATCATCTTGATCGCCATCATCGCTGtTTGCTCAGCTGAATT
CTACTACCCATGTCCTGACAGACTGTGTCATGGTACATCCTTGGGATCCA
TCTTTGGATTAGGAGATAAGCACCGAACACCAGATGTCTTTGTTCAATGT
GCACCAGGAGCTCATGGAAAGCTCAGAGCTGTTTGCCAAAGATGTCCACG
ACACCAAGTATTCAGCCGTAAATTCTCAGTTTGTGTTCGACGTACTTTTG
CTGTGTGCAAAGGAAAACATTGCAAACCACATGCTTTCAAACCACATCCA
AAACAATgCCCAAAATCATTGTGCGCCGATTACCCACACAGCGACTACGT
TGTCTTCCGATACCCGCACAAACCAACTTACTACGTCCAATGTACCGCTG
GAAGACCTGTCTGCAGACAATGTCCACATGGATTGATCTTCAACAACGAC
ATCAAAGTTTGCGATTTCCCACCAGCCAAGAAGCATtaaatgaagaCCAT
CATCTTGATCGCCATCATCGCTGtTTGCTCAGCTGAATTCTACTACCCAT
GTCCTGACAGACTGTGTCATGGTACATCCTTGGGATCCATCTTTGGATTA
GGAGATAAGCACCGAACACCAGATGTCTTTGTTCAATGTGCACCAGGAGC
TCATGGAAAGCTCAGAGCTGTTTGCCAAAGATGTCCACGACACCAAGTAT
TCAGCCGTAAATTCTCAGTTTGTGTTCGACGTACTTTTGCTGTGTGCAAA
GGAAAACATTGCAAACCACATGCTTTCAAACCACATCCAAAACAATgCCC
AAAATCATTGTGCGCCGATTACCCACACAGCGACTACGTTGTCTTCCGAT
ACCCGCACAAACCAACTTACTACGTCCAATGTACCGCTGGAAGACCTGTC
TGCAGACAATGTCCACATGGATTGATCTTCAACAACGACATCAAAGTTTG
CGATTTCCCACCAGCCAAGAAGCATtaaatgaagaCCATCATCTTGATCG
CCATCATCGCTGtTTGCTCAGCTGAATTCTACTACCCATGTCCTGACAGA
CTGTGTCATGGTACATCCTTGGGATCCATCTTTGGATTAGGAGATAAGCA
CCGAACACCAGATGTCTTTGTTCAATGTGCACCAGGAGCTCATGGAAAGC
TCAGAGCTGTTTGCCAAAGATGTCCACGACACCAAGTATTCAGCCGTAAA
TTCTCAGTTTGTGTTCGACGTACTTTTGCTGTGTGCAAAGGAAAACATTG
CAAACCACATGCTTTCAAACCACATCCAAAACAATgCCCAAAATCATTGT
GCGCCGATTACCCACACAGCGACTACGTTGTCTTCCGATACCCGCACAAA
CCAACTTACTACGTCCAATGTACCGCTGGAAGACCTGTCTGCAGACAATG
TCCACATGGATTGATCTTCAACAACGACATCAAAGTTTGCGATTTCCCAC
CAGCCAAGAAGCATtaaatgaagaCCATCATCTTGATCGCCATCATCGCT
GtTTGCTCAGCTGAATTCTACTACCCATGTCCTGACAGACTGTGTCATGG
TACATCCTTGGGATCCATCTTTGGATTAGGAGATAAGCACCGAACACCAG
ATGTCTTTGTTCAATGTGCACCAGGAGCTCATGGAAAGCTCAGAGCTGTT
TGCCAAAGATGTCCACGACACCAAGTATTCAGCCGTAAATTCTCAGTTTG
TGTTCGACGTACTTTTGCTGTGTGCAAAGGAAAACATTGCAAACCACATG
CTTTCAAACCACATCCAAAACAATgCCCAAAATCATTGTGCGCCGATTAC
CCACACAGCGACTACGTTGTCTTCCGATACCCGCACAAACCAACTTACTA
CGTCCAATGTACCGCTGGAAGACCTGTCTGCAGACAATGTCCACATGGAT
TGATCTTCAACAACGACATCAAAGTTTGCGATTTCCCACCAGCCAAGAAG
CATtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034193XLOC_034193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054208-exon-scaffold_242-1491911889:473621..473808TCONS_00054208-exon-scaffold_242-1491911889:473621..473808Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1510915933:473621..473808TCONS_00054208-exon-scaffold_242-1510915933:473621..473808Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1575043694:473621..473808TCONS_00054208-exon-scaffold_242-1575043694:473621..473808Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1491911889:474093..474119TCONS_00054208-exon-scaffold_242-1491911889:474093..474119Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1510915933:474093..474119TCONS_00054208-exon-scaffold_242-1510915933:474093..474119Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1575043694:474093..474119TCONS_00054208-exon-scaffold_242-1575043694:474093..474119Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1491911889:474590..474835TCONS_00054208-exon-scaffold_242-1491911889:474590..474835Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1510915933:474590..474835TCONS_00054208-exon-scaffold_242-1510915933:474590..474835Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1575043694:474590..474835TCONS_00054208-exon-scaffold_242-1575043694:474590..474835Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1491911889:475325..475603TCONS_00054208-exon-scaffold_242-1491911889:475325..475603Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1510915933:475325..475603TCONS_00054208-exon-scaffold_242-1510915933:475325..475603Clytia hemisphaericaexon
TCONS_00054208-exon-scaffold_242-1575043694:475325..475603TCONS_00054208-exon-scaffold_242-1575043694:475325..475603Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Incomplete protein sequenceTCONS_00054208-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:473621..475603 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.100995	0.0756492	0	0.998954	0.786401	0.68719	0.56257	0.224558	0.106971	0.135381	0.333566	1.30212	0.989867	429.294	42.1179	2.97451	0.598935	0.287191	0.0892801	0.193796	0	0.101676	0.405412	0	0.128042	0.183228	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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