TCONS_00054216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054216
Unique NameTCONS_00054216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054216 ID=TCONS_00054216|Name=TCONS_00054216|organism=Clytia hemisphaerica|type=transcript|length=2173bp
aataTATTTCAAACCATTATACCATGTACATTTTGAAGTTGAAGTAAATG
GGTTATGCTTTTTGTATGATTTTCCAAGAGAAATGAATGcgtctttttat
tttaatatctTTTAGATTTCTTAACTTAGTGAGAATATAAAGGAAACTAT
TACTTTGTTTGAAAGATTTAGCATCCGTCAAAGACATTCTAATCTTCCAA
AATGGGTGCAGGATATACACTCCCCGCCGATATGGTGACACATTTTGACG
ATGAAGAACTGAAGAGACTTGGAAAGCGGTTCAGGAAGTTGGATACTGAT
AACTCAGGAACCCTTTCAATTGAAGAGTTTATGTCTCTTCCTGAGCTCCA
ACAAAACCCTTTAGTTCAAAGAGTCATCGAAATCTTTGATACAGATGGTA
ACAAAGAAATTGACTTTCAAGaatttatcgAGGGAATTTCCCAATTCAGT
GTCAAAGGAGATAAAACACAGAAATTAAGATtTGCATTCAAAATATATGA
TATCAATCAAGATGGCTTCATTTCAAATGGTGAACTTTTTACAGTCTTAC
GTATGATGGTAggaaataatttgaaagaagTTCAGCTTCAACAAATTGTG
GATAAAACTATTTTGCAATTTGACACAGATGGCGATGGTAAAATTAGTTA
TGAAGAATTTTGCAATGTTGTTGGATCGATGGATGTGGATAAAAAAATGG
TTGTTGATGTTTAACAAAGTTCATTGCCTCAATCCCAAAGTATATTTATT
GATGGTAGTTCTTCCTCGTATGAAATCCAACGATGGTGAAATGAAGATGA
TTTCATTGTGTTTTCTGCAGGAAAACAGGATGGTTTAGTTTTATTCATAT
GAAAGTGGATAGAGTTATAAAAGAAGTCTATCATTCATTAAATCTTCCTG
GCGTGTTGGGAATATCAAGTTAGATGAAAAATTTAACTCGAGTTCAACCC
ATTGAATCAACTTTCAAACAAATGTTTATTGATATTGTATGAAATTTTTA
ATGTAAAATTTAACGATTACtgaaattatcatttttttatttggggcatt
tttcattttctcgtTCAGGATTTattaattcaaaattagtgttattatta
taaaaattccaacataatttttcatttaaagtttTCAGACATTGTcataa
caaaatatttattgTGTATTTATTATTTCTTTGTCGTTTAAAGTATAACC
TCGCTCTGGAACTCGAGAATGATAGCTTGAAAGGAGGCNTCCTGGCTTGT
TGGGAATATCAAGTTAGATGAAAAATTTAACTCGAGTTCAACCCATTGAA
TCAACTTTCAAACAAATGTTTATTGATATTGTATGAAATTTTAATGTAAA
ATTTAACGATTACtgaaattatcatttttttatttggggcatttttcatt
ttctcgtTCAGGATTTattaattcaaaattagtgttattattataaaaat
tccaacataatttttcatttaaagtttTCAGACATTGTcataacaaaata
tttattgTGTATTTATTATTTCTTTGTCGTTTAAAGTATAACCTCGCTCT
GGAACTCGAGAATGATAGCTTGAAAGGAGGCTGAAAAATCTATTAGCATT
TTTAGAATCCACTTTGAATTTAAGAAAATGACCCTCTGTAACTGTGACGG
TTAGATGAACTAAAGTAAttattttcttgatttctttaaaaaaaaaagaa
cattgtCTACAAAATTGCAAGTTTAagattattttccatttttaattATT
CTAGTacatatatttttgttttaaaatttgttttacaTGCACTTTTTGCC
CTAAGTTTGTTAACGATATTGATTTTTCTAGTATTTGTgtattattgaaa
gtttgtctttAGTCTAACTTTAATTTCCTTTTAACCCAAAAGATTGCATG
GTGTATATACCAATTTATGTGCATCAAAAgtaattgattttattttgaag
tgagATCGTCCatgaaaattttgtattttcactttttgaccCTTCATCTC
TTTTGAATTTAGATCTCCATTAATCTCCATTACTACAATTAGTCAAAATC
ATAATCTAATTATCGAGGAAACTTTACTTTGTGACTACTTACtaaaggtt
tttcaaaatttattttttggaaattttggtttttatgtCTGCTTTTGTGT
AAACTATATATCTTTGACTTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_242:545980..550815+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054216 ID=TCONS_00054216|Name=TCONS_00054216|organism=Clytia hemisphaerica|type=transcript|length=4836bp|location=Sequence derived from alignment at scaffold_242:545980..550815+ (Clytia hemisphaerica)
aataTATTTCAAACCATTATACCATGTACATTTTGAAGTTGAAGTAAATG
GGTTATGCTTTTTGTATGATTTTCCAAGAGAAATGAATGcgtctttttat
tttaatatctTTTAGATTTCTTAACTTAGTGAGAATATAAAGGAAACTAT
TACTTTGTTTGAAAGATTTAGCATCCGTCAAAGACATTCTAATCTTCCAA
AATGGTAAGTTCCTTATTTCTATAAAATCAttatgcaaattttttttctt
ctcaagTATATAAACCTCTTTCACAGTTTCTTATACTNATCTGTCAAAGA
CATTCTAATCTTCCAAAATGGTAAGTTCCTTATTTCTATAAAATCattat
gcaatttttttttcttctcaagTATATAAACCTCTTTCGGAGTTTCTTAT
ACCCTGTCattttgttcatattttcaccaatttttttgaaagctctCTAT
GGGACCAAAGATATGAGTGATTTCATAATTGTGACTCTATCAttagctaa
aaataaaaagattgaaataaaaaaagtaagttACATTGTTGATGAATTAG
AAACAATAAAATAGTCCTCCTCATTTTATAAAAGTCTATAATAGTAAAGT
AGTCCTGTTTTCATATCTCTtacaaaaatagagaaaaataataatatttt
aatctttaagttgaggaaatttttttggtccCATAATATCATTTACTGTT
ACTGAAAATAGAgatgtttttgaaataaaaatgatatCCTCTTTTGTCTT
GAAATGTCtgaatttttcttctgtttCATTTACAGGGTGCAGGATATACA
CTCCCCGCCGATATGGTGACACATTGTAGGTTTCTTTTGATGTTGTAGAT
AAACCTCCTATTCTCTAAAAAGATACATTAGATAAGACATTCTTAATTCT
AAAACACTCAATCAATGTCGACCTGTCatatatttttagtttaaataaaa
ttgggttttttttcaaacaatttttcttttttgagttAATGTTATTTAGA
TACTTTGAACCTATTGTAGCAAGCAGTCTGACCCAGTTTAACCTATTAAA
ATGGCTTTTATTCGGGCTTGTAAGTTaggttctttttttttctttaacct
ATACAAAGCTCTTCACCCTATTATGAAATTCTAAATCTGACAAATAAAGC
AATTAGGAgccaaattttagaaaatattaagacgtatcaaacttttttat
tagGTTGTAACTTTATTCTTTCAATCTAAATTTTAGTTGACGATGAAGAA
CTGAAGAGACTTGGAAAGCGGTTCAGGAAGTTGGATACTGATAACTCAGG
AACCCTTTCAATTGAAGAGTTTATGTCTCTTCCTGAGCTCCAACAAAACC
CTTTAGTTCAAAGAGTCATCGAAATCTTTGATACAGATGGTAACAAAGAA
ATTGACTTTCAAGGTATTGATTTAGAAAAACTCACTTTTGTGTTTTTGCC
ATTTGTGTTGTCGTGTAGTTGAATGACTAGGACTAGGAGGTCCTCTAGCc
tctaaaatgttttttaacacttttggTTGCTTTTTAAAATCCAATGATAT
TCTtatgtttttagaatttatcgAGGGAATTTCCCAATTCAGTGTCAAAG
GAGATAAAACACAGAAATTAAGATGTAAGttaaattttgatcaaacaAAA
GTGAAAACTCCCTAGTGGAGGATGATGATgtatttaatttaattaaattt
aattaaaattgGTTTcaataccgggtgtgccacaaaaaagtttctctctt
tgaaactagttttctagaaatctaaaaattccaaaagaaccattcctaac
attggaagaagaaagataaacttaaattttgatgggccatttttatttat
caaatgcaattcattagatcaaaagttatgctcaattctgctcgattgaa
taaaaaagttacttccAGAAAGTGTtcgaaaatgttaaaaattgacctat
caaatttttatttcaaaattggcaatcgcaacagcctttacatgattata
agagcatttttaattataattaaatacattaatttaatttacttttactg
AAATTGTCTTAAGACTTTTTTACTAGAATGGATAAgtaagtctatgtaag
gctggatgtacctcgaaacccatatttgatgtatttttatgaattttacc
agatttctTGGCCTTTTAgacaaattttctaaaaatatactGATGTGTCA
TGTagttatgcttctgtttaatttgataggttgaCTTAATGATTTACact
atttttttgtgttttttcagTTGCANgttatgcttctgtttaatttgata
ggttgaCTTATTAATTTACactatttttttgtgtttttttcagtTGCATT
CAAAATATATGATATCAATCAAGATGGCTTCATTTCAAATGGTGAACTTT
TTACAGTCTTACGTATGATGGTAggaaataatttgaaagaagTTCAGCTT
CAACAAATTGTGGATAAAACTATTTTGCAATTTGACACAGATGGCGATGG
TAAAATTAGTTATGAAGAATTTTGCAATGTAAGTTTACGTAGACTcttat
ttttcactttgtttcaGGATTTCATTAATCCTTTCACACTTTTATCTTGC
CTTAATTTATTAAAATGGGAGGCttaataaagaaaattttttcaaagctt
ttatCTATTTGAACTTGTCAGATTTTCTACTTTTGATTTAAGCTTGTTTa
gggaaatttatttttcttcaatttaaGGCAGTCTTCGAAAATCATGTGTT
CTTGCCTCAGGATTTCTGATTTGTGACTTTTCATTTTTCCTCTTTTAACT
CCCAGTTCACAATAAATTCTATTTATGATCCtacctttttctgaaaaata
atcTTGTATAGATTAATAATCAAtaattgttgataaattttttgaaggtA
AATGGACTATTCCaaagattccaaaaattttttttgggaaaggtgacccc
ctggattttttttcgatttctcaGGACCTCCCCTGGATTTTCTCTGCTTA
TTATTTGGACTCCCCTTGGTTTTCGACCTTGTTTCACTGACCACCCTGGG
TTTCAACCTTATTTTactaaccaccctggatttttcacttcatttttact
gaccaccctggactTAGACGTTCTAAGTCTAGACCCCTGGATTTTTATTT
ATCAGACCACCCTGggcgtcacacctcctcaaaaTCCCCCTATTTTGAGG
AGGTGTGATGCCCAGGGTGGTCTGATAAATAAAAATCCAGGGGATCTAGA
CTTAAAGCAAAtaagacaaattctggaatatAGCCCAATTCAATAATTGC
ATTTCACTGTATATTTTATCTTACAACAGGTTGTTGGATCGATGGATGTG
GATAAAAAAATGGTTGTTGATGTTTAACAAAGTTCATTGCCTCAATCCCA
AAGTATATTTATTGATGGTAGTTCTTCCTCGTATGAAATCCAACGATGGT
GAAATGAAGATGATTTCATTGTGTTTTCTGCAGGAAAACAGGATGGTTTA
GTTTTATTCATATGAAAGTGGATAGAGTTATAAAAGAAGTCTATCATTCA
TTAAATCTTCCTGGCGTGTTGGGAATATCAAGTTAGATGAAAAATTTAAC
TCGAGTTCAACCCATTGAATCAACTTTCAAACAAATGTTTATTGATATTG
TATGAAATTTTTAATGTAAAATTTAACGATTACtgaaattatcatttttt
tatttggggcatttttcattttctcgtTCAGGATTTattaattcaaaatt
agtgttattattataaaaattccaacataatttttcatttaaagtttTCA
GACATTGTcataacaaaatatttattgTGTATTTATTATTTCTTTGTCGT
TTAAAGTATAACCTCGCTCTGGAACTCGAGAATGATAGCTTGAAAGGAGG
CNTCCTGGCTTGTTGGGAATATCAAGTTAGATGAAAAATTTAACTCGAGT
TCAACCCATTGAATCAACTTTCAAACAAATGTTTATTGATATTGTATGAA
ATTTTAATGTAAAATTTAACGATTACtgaaattatcatttttttatttgg
ggcatttttcattttctcgtTCAGGATTTattaattcaaaattagtgtta
ttattataaaaattccaacataatttttcatttaaagtttTCAGACATTG
TcataacaaaatatttattgTGTATTTATTATTTCTTTGTCGTTTAAAGT
ATAACCTCGCTCTGGAACTCGAGAATGATAGCTTGAAAGGAGGCTGAAAA
ATCTATTAGCATTTTTAGAATCCACTTTGAATTTAAGAAAATGACCCTCT
GTAACTGTGACGGTTAGATGAACTAAAGTAAttattttcttgatttcttt
aaaaaaaaaagaacattgtCTACAAAATTGCAAGTTTAagattattttcc
atttttaattATTCTAGTacatatatttttgttttaaaatttgttttaca
TGCACTTTTTGCCCTAAGTTTGTTAACGATATTGATTTTTCTAGTATTTG
TgtattattgaaagtttgtctttAGTCTAACTTTAATTTCCTTTTAACCC
AAAAGATTGCATGGTGTATATACCAATTTATGTGCATCAAAAgtaattga
ttttattttgaagtgagATCGTCCatgaaaattttgtattttcacttttt
gaccCTTCATCTCTTTTGAATTTAGATCTCCATTAATCTCCATTACTACA
ATTAGTCAAAATCATAATCTAATTATCGAGGAAACTTTACTTTGTGACTA
CTTACtaaaggtttttcaaaatttattttttggaaattttggtttttatg
tCTGCTTTTGTGTAAACTATATATCTTTGACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034197XLOC_034197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054216-exon-scaffold_242-1491911889:545980..546183TCONS_00054216-exon-scaffold_242-1491911889:545980..546183Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1510915933:545980..546183TCONS_00054216-exon-scaffold_242-1510915933:545980..546183Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1575043694:545980..546183TCONS_00054216-exon-scaffold_242-1575043694:545980..546183Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1491911889:546765..546804TCONS_00054216-exon-scaffold_242-1491911889:546765..546804Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1510915933:546765..546804TCONS_00054216-exon-scaffold_242-1510915933:546765..546804Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1575043694:546765..546804TCONS_00054216-exon-scaffold_242-1575043694:546765..546804Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1491911889:547216..547392TCONS_00054216-exon-scaffold_242-1491911889:547216..547392Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1510915933:547216..547392TCONS_00054216-exon-scaffold_242-1510915933:547216..547392Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1575043694:547216..547392TCONS_00054216-exon-scaffold_242-1575043694:547216..547392Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1491911889:547544..547603TCONS_00054216-exon-scaffold_242-1491911889:547544..547603Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1510915933:547544..547603TCONS_00054216-exon-scaffold_242-1510915933:547544..547603Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1575043694:547544..547603TCONS_00054216-exon-scaffold_242-1575043694:547544..547603Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1491911889:548323..548507TCONS_00054216-exon-scaffold_242-1491911889:548323..548507Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1510915933:548323..548507TCONS_00054216-exon-scaffold_242-1510915933:548323..548507Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1575043694:548323..548507TCONS_00054216-exon-scaffold_242-1575043694:548323..548507Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1491911889:549309..550815TCONS_00054216-exon-scaffold_242-1491911889:549309..550815Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1510915933:549309..550815TCONS_00054216-exon-scaffold_242-1510915933:549309..550815Clytia hemisphaericaexon
TCONS_00054216-exon-scaffold_242-1575043694:549309..550815TCONS_00054216-exon-scaffold_242-1575043694:549309..550815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:545980..550815 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.719369	0.834676	0.733707	1.13147	1.55823	0.729037	14.9157	13.3101	0.338178	29.8347	5.22355	24.0713	0.266204	2.22283	2.95618	3.15792	17.1164	5.51611	0.0382344	0.135321	24.7169	13.3005	0.358547	1.40991	0.281675	0.413726	0.385876	0.388348	0.208241	0.405896
Blast
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BLAST of TCONS_00054216 vs. Swiss-Prot (Human)
Match: CANB1 (Calcineurin subunit B type 1 OS=Homo sapiens GN=PPP3R1 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 8.066e-78
Identity = 117/154 (75.97%), Postives = 139/154 (90.26%), Query Frame = 1 
Query:  202 MGAGYTLPADMVTHFDDEELKRLGKRFRKLDTDNSGTLSIEEFMSLPELQQNPLVQRVIEIFDTDGNKEIDFQEFIEGISQFSVKGDKTQKLRFAFKIYDINQDGFISNGELFTVLRMMVGNNLKEVQLQQIVDKTILQFDTDGDGKISYEEFC 663
            MG   + P +M +HFD +E+KRLGKRF+KLD DNSG+LS+EEFMSLPELQQNPLVQRVI+IFDTDGN E+DF+EFIEG+SQFSVKGDK QKLRFAF+IYD+++DG+ISNGELF VL+MMVGNNLK+ QLQQIVDKTI+  D DGDG+IS+EEFC
Sbjct:    1 MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC 154
The following BLAST results are available for this feature:
BLAST of TCONS_00054216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CANB18.066e-7875.97Calcineurin subunit B type 1 OS=Homo sapiens GN=PP... [more]
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