TCONS_00054223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054223
Unique NameTCONS_00054223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054223 ID=TCONS_00054223|Name=TCONS_00054223|organism=Clytia hemisphaerica|type=transcript|length=2023bp
tcatttattgtcAAAAGGTTCATATATTAAAAATTCAATAGAAAATTTTG
TGATAAACTAAATAATTAGAAGAAATGTCAGACTGGGAATTCATATTCGA
TGGTGTCTTTGGTTTTCTTTCATCGCCTATGTGGCTTGCTCCTATAATGC
ATTTCATTGAGAACCAGTCTGTGGTGTTCAAGGAGAGTGAAGAAAATTAC
CATGAATGGACCCAAATACACAAACAATATGGAGAACTGGTTGAGTCTTT
GCTTTCAAGTTACTTGCAAGATGTTGGGATAACTGAAGAACAATTCATGC
AAGCATGTAAAACCCCCGGTGTTGAAGAAAGAGCTGATATGCAAcaaatt
ttcgaaCAATTATGGGCATcagatgattttgaaattttcaaacgaatgat
gattcaaaagaatgtcgaattagagtTGCAAGCTCTTGAATTGGTCCGCA
AAAGACAAGgtAAAAAGGCCAAGCAACAGAAGAAAAAGACCAAATCAAAA
GTTGCAATGACTGAGGACGAAATCTTGGCTCAAGTTATGAAACAATCTGA
GCTTGAATATCAAGAACATCAAAAACGACTCAAAGATGATGAAACTGAAA
CAAAATCTGAATCCAAATTTGACGATGCCATGGAAAAAGTATTGTCAGAA
TCGACAAATCACTTTGAAAAATTAGAAAAAGAGGTTGAGTTGAAAGAACA
AGAGACGAAACAGTACGTGGAGGAGAATATTTCGCAAGAGTTGACTACCA
AAGAGGAAGAGGTACCAACACCAAAGCCAAGCGAGACAAAACAATCAGAG
CCTGCCAAACCAAAATCACCTGTAAAAACATCAACAGCTTCCAGTGAGCC
AGTCAAATCAAAAAGTCCAGAAATTCCAACACTAAAGACCAAAGCACCGT
TATCACCTATCAAAAGATCAGCCGGTTCTGAAGCTGCCAGTGAATGGATG
AAGAATGCTAGGGAAGAAAATCAACCACCTGCATCCACTTCTGCATCCAG
TAGCAAGgGGTCTGACATGACTGAAGACGATATGGCAAAACGAATCGAAT
ATTTGAAACAACAAAGAGATCGTTTACTAGCAATGAAAAAGAACGAGAGA
GAAAAACAATTGGATCAATATTCCAAAACCGAGTCTAAGAAACGCCCTAC
TTCAGCTAGGGTGGCACGCCAAGCTGTATCGGGTGGCGGTGCTGAAGCCG
CAAAACCTGCCGTTTCTGCTGAAGATGCAAAGAAGATAGCAATGAGAAAA
GCTTTAGCTGAAAAATTACGAAAAGAAGTcatcaacaaataaaaatttta
gttAAAGCTTACTTTATAATTTTCGTGACGTAGATTGGGCACCCTAATAT
TTTGGTCCTTCTAAAGTCTATAGTAAGTTATAGTAGTTAGATTATATCAG
AAAGCTTAAACGAAACTCTTGACActgaacttttttttcttcaccgtTTT
GTATCAGTTTAAGGTATTTTCAGCATAGATTTGGTTATTGAACTTTTACC
GTCTTACCCTAGGCGTTTGATGCTAACGACCAATATTTTAGGACAATTTA
TTTCTTATTGCCAACGATTTTAAATTATATTATATACAGCAcattaggat
tttttttttgttaatttgatttgataatatgatttatttattaaattttt
ttgtttgtttataccactagattttttaaaacgaaaaaattaGGAGCTTG
ATACAAAAATTTTAACATAAGATATGCAAGTGTTAAAAGCGTAGCTCTAG
ATAGATAGACTGGAGATAAAATTTCATTAAtatattagattttttttagc
tttgcactttaatttattttatgtTCATTACTTTTTGTGTTCGTAGGTAT
GtatgtttgtaaaatttgtttttaaaacagaAAGATGTCTGGTGAATATA
ttattttaagaatttgaaTATGAGAACACCTCTTAAAAAGCATATCAGAA
AAATTGcttgtgaaaaatatttttaatttcatcatTATATGCGTATTTTC
Gtgtaattttttaagaaatcggg
Run BLAST on NCBI

protein sequence of TCONS_00054223-protein

>TCONS_00054223-protein ID=TCONS_00054223-protein|Name=TCONS_00054223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MSDWEFIFDGVFGFLSSPMWLAPIMHFIENQSVVFKESEENYHEWTQIHK
QYGELVESLLSSYLQDVGITEEQFMQACKTPGVEERADMQQIFEQLWASD
DFEIFKRMMIQKNVELELQALELVRKRQGKKAKQQKKKTKSKVAMTEDEI
LAQVMKQSELEYQEHQKRLKDDETETKSESKFDDAMEKVLSESTNHFEKL
EKEVELKEQETKQYVEENISQELTTKEEEVPTPKPSETKQSEPAKPKSPV
KTSTASSEPVKSKSPEIPTLKTKAPLSPIKRSAGSEAASEWMKNAREENQ
PPASTSASSSKGSDMTEDDMAKRIEYLKQQRDRLLAMKKNEREKQLDQYS
KTESKKRPTSARVARQAVSGGGAEAAKPAVSAEDAKKIAMRKALAEKLRK
EVINK
Run BLAST on NCBI

transcript from alignment at scaffold_242:605923..610518+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054223 ID=TCONS_00054223|Name=TCONS_00054223|organism=Clytia hemisphaerica|type=transcript|length=4596bp|location=Sequence derived from alignment at scaffold_242:605923..610518+ (Clytia hemisphaerica)
tcatttattgtcAAAAGGTTCATATATTAAAAATTCAATAGAAAATTTTG
TGATAAACTAAATAATTAGAAGAAATGTCAGACTGGGAATTCATATTCGA
TGGTGTCTTTGGTTTTCTTTCATCGCCTATGTGGCTTGCTCCTATAATGC
ATTTCATTGAGAACCAGTCTGTGGGTAAGTATCTTTTATACTTCATAAAA
CGcataacattttcaatttgagTCTATGTATGATGTTTTCATCAATACAA
ACTTTTTTCCTCTTGAGCTGATTTAGTAGGTCTGGGTTGAGTTTTTTTTA
TGCAAAAGGCTTGTTTTAGATTGGGAAATTAAAACATAATGGCAGCAGTT
TACCTTTTTGCACAATGGTACTTCTAATTATGTTTGCTTATCTATGCCTC
TGTAAGGTTTTTGAAATATGGGTATAAAGTAATATAGATCACACTAAATA
ATGTCCCCAAACTCCATGCCATCTTCTCTTTTGACTTGATTTAGTATTTT
ATGTATCTTTTAATCTTTCAAATAGAGAAATTACAAACACAATAAATGTT
TGTCTTTACCAGCTAACTTTTAACTTGTTTTCTCTTTGCTATTTTATGAT
GTGGTTTTGTTTCTGTTTAGTGTTCAAGGAGAGTGAAGAAAATTACCATG
AATGGACCCAAATACACAAACAATATGGAGAACTGGTAAGGTCTCTTAAT
CTTCAGTCTCACGGACTACTAAAGTAAACAATAtatttggtttattttgt
tGCCTTTTTGATGTACCAGGATGGCAAATCTAACCACAGCACATATCCAT
TTATTTTTTGCTATTCTGTAGTTTGGGTGCTACTTCATCCTTCTAGACAA
AATTATCGTTAGGCTTCCTTGTATTCATTcttgcttttatttttttttca
aatatttttacctCTAGGTTGAGTCTTTGCTTTCAAGTTACTTGCAAGAT
GTTGGGATAACTGAAGAACAATTCATGCAAGCATGTAAAACCCCCGGTGT
TGAAGAAAGAGCTGATATGCAAGTATGTCGCCCCATTTACTCTCGCCAGT
GGTTTACGTAATTGTGTGGATCGTGGCTTTTTTTCTGCATGATGCCGCGa
atccaaatttaatttttcagtatGATAAGAGATAAGGAAAATTTGAGGCA
GGATTcatgattttatcttttttcgaGCAGGGGACTTCTTCTATAGCCAG
TTCGTCTGAAAGGGATTTATAATCATGATGCTCAAACGTCTTGCAAAAAG
CTGACTGGCAATAGGGCTCCTGTCGGCCGTTCGTTTGTTcatataaatat
aatttttcatttcttatagcaaattttcgaaCAATTATGGGCATcagatg
attttgaaattttcaaacgaatgatgattcaaaagaatgtcgaattagag
tTGCAAGCTCTTGAATTGGTCCGCAAAAGACAAGGTATTTTTACATAATG
AAACATTTCGGTTCAATTTATTTTACTTGCCTTAAACACATAGTTCTGGT
ATCATAACCCAGAcaggttttgaaaagtttgttcTTTCATGATccatatt
ttgaccaaagtATTTCTGGAAATTCggattatattttgatttttaaacaa
aggttctattttttttttcatcaaggtAAAAAGGCCAAGCAACAGAAGAA
AAAGACCAAATCAAAAGTTGCAATGACTGAGGACGAAATCTTGGCTCAAG
TTATGAAACAATCTGAGCTTGAATATCAAGAACATCAAAAACGACTCAAA
GATGATGAAACTGAAACAAAATCTGAATCCAAATTTGACGATGCCATGGA
AAAAGTATTGTCAGAATCGACAAATCACTTTGAAAAGTAAGAAGAATGAA
TGAAGGGTACTGCAAACTGTGTTGAGCCTCCCCTTCACATAGGCTCTGTA
ATTGGACTTAAAGCTATTGATATTGGACTGAAACTTggaccaaaattgaa
atttagtttttgatatCTGTAAAATGCTAAGCTGCCCAAATAACCATGAA
CGAGCTTCNTTTAGTTTTTTGATATCTGTAAAATGCCAAGCTGCCCAAAT
AACCATGAATGAGCTTATAACTCctctctattcatgatatgcaccattgc
aatgtcttctaacattacatcacgaccccaaatacgtcacttgcaaccaa
tcagctgttgggtccgtggaagacattgcaatggtgcatattatgaattg
TTCTGGAAATAAtataacaatttgaaataaatataaaaaagatgTCAGCA
CTAAAGGATAATAACCTTATTCTCTAGATTAGAAAAAGAGGTTGAGTTGA
AAGAACAAGAGACGAAACAGTACGTGGAGGAGAATATTTCGCAAGAGTTG
ACTACCAAAGAGGAAGAGGTATCAATTTATTCATGTAATCCATTCGTACA
CTATACTGTCCTTAGGAAATTAATTTGACAATAATTCAATCCAGGTTACC
GCAGGTTACCGctttgttgtatttttttatCAGTCTTGAAAAAAACAGCT
ATGATACTCTCCGGCAGATGAAAATTGGTAGAGAATTCAGTTTGCTACAG
GGATTTCAGTACTAAAATCTCGGACACAATGATGTTTACTGATGTAGTGA
TGTACTAAACAATTTCCAAATTACTGTTATAGTATCCATCATGAGatatc
aaaataacaaaaaggtGGTATCCAGacaaattagagaaatttttagtaCT
TTAGTGTTAAAGTCTTAAAgattcttataattttttgcagaatctttcag
aagtttttcaaaaaattcaaaatttgagttGATTGGAGGTCCTGCTATAT
GTATATCGATTGAGTTATTTGgtataaaaaaaacttctttGTCACTCAGG
TACCAACACCAAAGCCAAGCGAGACAAAACAATCAGAGCCTGCCAAACCA
AAATCACCTGTAAAAACATCAACAGCTTCCAGTGAGCCAGTCAAATCAAA
AAGTCCAGAAATTCCAACACTAAAGACCAAAGCACCGTTATCACCTATCA
AAAGATCAGCCGGTTCTGAAGCTGCCAGTGAATGGATGAAGAATGCTAGG
GAAGAAAATCAACCACCTGCATCCACTTCTGCATCCAGTAGCAAGGTATT
TATTCTTAGATTGACTTTCCCCTCGATACCGTAGTGTctttacagttgac
tctctctaattcgatcttcgagGGACCAAGAGTTTTCTTCGAACTAGAGA
AACATTCCGATTACGGATAACTTTCCCCTTTCTGAGGGAaataatatttt
agttcgaattaaatACGTAGAGATTCGAACAGTAGATGTTTGAATTAGAG
AGGATCGACTGTAGTCAATGGTTGTTGGCGAGAATGACTATATAAGTACT
TCAGTTAGCTTTTGTATCGAAACTTTAAGGTTATGAGTAAAAGTCATCAC
CGAATGCATGaagctaattttttttaagtgaTTAAGTTTTACACATACAA
AGCTCTCCGTACACTTTCTCTCTCGAACTCGATCGTTTGACATTTGAATA
CAAAAGAATAAGGTTGGTGTTGAAATGATGTGTCCTTTGTCAGATGATTT
CAaatctaaattctttttttcacattttaggGGTCTGACATGACTGAAGA
CGATATGGCAAAACGAATCGAATATTTGAAACAACAAAGAGATCGTTTAC
TAGCAATGAAAAAGAACGAGAGAGAAAAACAATTGGATCAATATTCCAAA
ACCGAGTCTAAGAAACGCCCTACTTCAGCTAGGGTGGCACGCCAAGCTGT
ATCGGGTGGCGGTGCTGAAGCCGCAAAACCTGCCGTTTCTGCTGAAGATG
CAAAGAAGATAGCAATGAGAAAAGCTTTAGCTGAAAAATTACGAAAAGAA
GTcatcaacaaataaaaattttagttAAAGCTTACTTTATAATTTTCGTG
ACGTAGATTGGGCACCCTAATATTTTGGTCCTTCTAAAGTCTATAGTAAG
TTATAGTAGTTAGATTATATCAGAAAGCTTAAACGAAACTCTTGACActg
aacttttttttcttcaccgtTTTGTATCAGTTTAAGGTATTTTCAGCATA
GATTTGGTTATTGAACTTTTACCGTCTTACCCTAGGCGTTTGATGCTAAC
GACCAATATTTTAGGACAATTTATTTCTTATTGCCAACGATTTTAAATTA
TATTATATACAGCAcattaggattttttttttgttaatttgatttgataa
tatgatttatttattaaatttttttgtttgtttataccactagatttttt
aaaacgaaaaaattaGGAGCTTGATACAAAAATTTTAACATAAGATATGC
AAGTGTTAAAAGCGTAGCTCTAGATAGATAGACTGGAGATAAAATTTCAT
TAAtatattagattttttttagctttgcactttaatttattttatgtTCA
TTACTTTTTGTGTTCGTAGGTATGtatgtttgtaaaatttgtttttaaaa
cagaAAGATGTCTGGTGAATATAttattttaagaatttgaaTATGAGAAC
ACCTCTTAAAAAGCATATCAGAAAAATTGcttgtgaaaaatatttttaat
ttcatcatTATATGCGTATTTTCGtgtaattttttaagaaatcggg

Coding sequence (CDS) from alignment at scaffold_242:605923..610518+

>TCONS_00054223 ID=TCONS_00054223|Name=TCONS_00054223|organism=Clytia hemisphaerica|type=CDS|length=9744bp|location=Sequence derived from alignment at scaffold_242:605923..610518+ (Clytia hemisphaerica)
ATGTCAGACTGGGAATTCATATTCGATGGTGTCTTTGGTTTTCTTTCATC
GCCTATGTGGCTTGCTCCTATAATGCATTTCATTGAGAACCAGTCTGTGG
TGTTCAAGGAGAGTGAAGAAAATTACCATGAATGGACCCAAATACACAAA
CAATATGGAGAACTGGTTGAGTCTTTGCTTTCAAGTTACTTGCAAGATGT
TGGGATAACTGAAGAACAATTCATGCAAGCATGTAAAACCCCCGGTGTTG
AAGAAAGAGCTGATATGCAAcaaattttcgaaCAATTATGGGCATcagat
gattttgaaattttcaaacgaatgatgattcaaaagaatgtcgaattaga
gtTGCAAGCTCTTGAATTGGTCCGCAAAAGACAAGgtAAAAAGGCCAAGC
AACAGAAGAAAAAGACCAAATCAAAAGTTGCAATGACTGAGGACGAAATC
TTGGCTCAAGTTATGAAACAATCTGAGCTTGAATATCAAGAACATCAAAA
ACGACTCAAAGATGATGAAACTGAAACAAAATCTGAATCCAAATTTGACG
ATGCCATGGAAAAAGTATTGTCAGAATCGACAAATCACTTTGAAAAATTA
GAAAAAGAGGTTGAGTTGAAAGAACAAGAGACGAAACAGTACGTGGAGGA
GAATATTTCGCAAGAGTTGACTACCAAAGAGGAAGAGGTACCAACACCAA
AGCCAAGCGAGACAAAACAATCAGAGCCTGCCAAACCAAAATCACCTGTA
AAAACATCAACAGCTTCCAGTGAGCCAGTCAAATCAAAAAGTCCAGAAAT
TCCAACACTAAAGACCAAAGCACCGTTATCACCTATCAAAAGATCAGCCG
GTTCTGAAGCTGCCAGTGAATGGATGAAGAATGCTAGGGAAGAAAATCAA
CCACCTGCATCCACTTCTGCATCCAGTAGCAAGgGGTCTGACATGACTGA
AGACGATATGGCAAAACGAATCGAATATTTGAAACAACAAAGAGATCGTT
TACTAGCAATGAAAAAGAACGAGAGAGAAAAACAATTGGATCAATATTCC
AAAACCGAGTCTAAGAAACGCCCTACTTCAGCTAGGGTGGCACGCCAAGC
TGTATCGGGTGGCGGTGCTGAAGCCGCAAAACCTGCCGTTTCTGCTGAAG
ATGCAAAGAAGATAGCAATGAGAAAAGCTTTAGCTGAAAAATTACGAAAA
GAAGTcatcaacaaataaATGTCAGACTGGGAATTCATATTCGATGGTGT
CTTTGGTTTTCTTTCATCGCCTATGTGGCTTGCTCCTATAATGCATTTCA
TTGAGAACCAGTCTGTGGTGTTCAAGGAGAGTGAAGAAAATTACCATGAA
TGGACCCAAATACACAAACAATATGGAGAACTGGTTGAGTCTTTGCTTTC
AAGTTACTTGCAAGATGTTGGGATAACTGAAGAACAATTCATGCAAGCAT
GTAAAACCCCCGGTGTTGAAGAAAGAGCTGATATGCAAcaaattttcgaa
CAATTATGGGCATcagatgattttgaaattttcaaacgaatgatgattca
aaagaatgtcgaattagagtTGCAAGCTCTTGAATTGGTCCGCAAAAGAC
AAGgtAAAAAGGCCAAGCAACAGAAGAAAAAGACCAAATCAAAAGTTGCA
ATGACTGAGGACGAAATCTTGGCTCAAGTTATGAAACAATCTGAGCTTGA
ATATCAAGAACATCAAAAACGACTCAAAGATGATGAAACTGAAACAAAAT
CTGAATCCAAATTTGACGATGCCATGGAAAAAGTATTGTCAGAATCGACA
AATCACTTTGAAAAATTAGAAAAAGAGGTTGAGTTGAAAGAACAAGAGAC
GAAACAGTACGTGGAGGAGAATATTTCGCAAGAGTTGACTACCAAAGAGG
AAGAGGTACCAACACCAAAGCCAAGCGAGACAAAACAATCAGAGCCTGCC
AAACCAAAATCACCTGTAAAAACATCAACAGCTTCCAGTGAGCCAGTCAA
ATCAAAAAGTCCAGAAATTCCAACACTAAAGACCAAAGCACCGTTATCAC
CTATCAAAAGATCAGCCGGTTCTGAAGCTGCCAGTGAATGGATGAAGAAT
GCTAGGGAAGAAAATCAACCACCTGCATCCACTTCTGCATCCAGTAGCAA
GgGGTCTGACATGACTGAAGACGATATGGCAAAACGAATCGAATATTTGA
AACAACAAAGAGATCGTTTACTAGCAATGAAAAAGAACGAGAGAGAAAAA
CAATTGGATCAATATTCCAAAACCGAGTCTAAGAAACGCCCTACTTCAGC
TAGGGTGGCACGCCAAGCTGTATCGGGTGGCGGTGCTGAAGCCGCAAAAC
CTGCCGTTTCTGCTGAAGATGCAAAGAAGATAGCAATGAGAAAAGCTTTA
GCTGAAAAATTACGAAAAGAAGTcatcaacaaataaATGTCAGACTGGGA
ATTCATATTCGATGGTGTCTTTGGTTTTCTTTCATCGCCTATGTGGCTTG
CTCCTATAATGCATTTCATTGAGAACCAGTCTGTGGTGTTCAAGGAGAGT
GAAGAAAATTACCATGAATGGACCCAAATACACAAACAATATGGAGAACT
GGTTGAGTCTTTGCTTTCAAGTTACTTGCAAGATGTTGGGATAACTGAAG
AACAATTCATGCAAGCATGTAAAACCCCCGGTGTTGAAGAAAGAGCTGAT
ATGCAAcaaattttcgaaCAATTATGGGCATcagatgattttgaaatttt
caaacgaatgatgattcaaaagaatgtcgaattagagtTGCAAGCTCTTG
AATTGGTCCGCAAAAGACAAGgtAAAAAGGCCAAGCAACAGAAGAAAAAG
ACCAAATCAAAAGTTGCAATGACTGAGGACGAAATCTTGGCTCAAGTTAT
GAAACAATCTGAGCTTGAATATCAAGAACATCAAAAACGACTCAAAGATG
ATGAAACTGAAACAAAATCTGAATCCAAATTTGACGATGCCATGGAAAAA
GTATTGTCAGAATCGACAAATCACTTTGAAAAATTAGAAAAAGAGGTTGA
GTTGAAAGAACAAGAGACGAAACAGTACGTGGAGGAGAATATTTCGCAAG
AGTTGACTACCAAAGAGGAAGAGGTACCAACACCAAAGCCAAGCGAGACA
AAACAATCAGAGCCTGCCAAACCAAAATCACCTGTAAAAACATCAACAGC
TTCCAGTGAGCCAGTCAAATCAAAAAGTCCAGAAATTCCAACACTAAAGA
CCAAAGCACCGTTATCACCTATCAAAAGATCAGCCGGTTCTGAAGCTGCC
AGTGAATGGATGAAGAATGCTAGGGAAGAAAATCAACCACCTGCATCCAC
TTCTGCATCCAGTAGCAAGgGGTCTGACATGACTGAAGACGATATGGCAA
AACGAATCGAATATTTGAAACAACAAAGAGATCGTTTACTAGCAATGAAA
AAGAACGAGAGAGAAAAACAATTGGATCAATATTCCAAAACCGAGTCTAA
GAAACGCCCTACTTCAGCTAGGGTGGCACGCCAAGCTGTATCGGGTGGCG
GTGCTGAAGCCGCAAAACCTGCCGTTTCTGCTGAAGATGCAAAGAAGATA
GCAATGAGAAAAGCTTTAGCTGAAAAATTACGAAAAGAAGTcatcaacaa
ataaATGTCAGACTGGGAATTCATATTCGATGGTGTCTTTGGTTTTCTTT
CATCGCCTATGTGGCTTGCTCCTATAATGCATTTCATTGAGAACCAGTCT
GTGGTGTTCAAGGAGAGTGAAGAAAATTACCATGAATGGACCCAAATACA
CAAACAATATGGAGAACTGGTTGAGTCTTTGCTTTCAAGTTACTTGCAAG
ATGTTGGGATAACTGAAGAACAATTCATGCAAGCATGTAAAACCCCCGGT
GTTGAAGAAAGAGCTGATATGCAAcaaattttcgaaCAATTATGGGCATc
agatgattttgaaattttcaaacgaatgatgattcaaaagaatgtcgaat
tagagtTGCAAGCTCTTGAATTGGTCCGCAAAAGACAAGgtAAAAAGGCC
AAGCAACAGAAGAAAAAGACCAAATCAAAAGTTGCAATGACTGAGGACGA
AATCTTGGCTCAAGTTATGAAACAATCTGAGCTTGAATATCAAGAACATC
AAAAACGACTCAAAGATGATGAAACTGAAACAAAATCTGAATCCAAATTT
GACGATGCCATGGAAAAAGTATTGTCAGAATCGACAAATCACTTTGAAAA
ATTAGAAAAAGAGGTTGAGTTGAAAGAACAAGAGACGAAACAGTACGTGG
AGGAGAATATTTCGCAAGAGTTGACTACCAAAGAGGAAGAGGTACCAACA
CCAAAGCCAAGCGAGACAAAACAATCAGAGCCTGCCAAACCAAAATCACC
TGTAAAAACATCAACAGCTTCCAGTGAGCCAGTCAAATCAAAAAGTCCAG
AAATTCCAACACTAAAGACCAAAGCACCGTTATCACCTATCAAAAGATCA
GCCGGTTCTGAAGCTGCCAGTGAATGGATGAAGAATGCTAGGGAAGAAAA
TCAACCACCTGCATCCACTTCTGCATCCAGTAGCAAGgGGTCTGACATGA
CTGAAGACGATATGGCAAAACGAATCGAATATTTGAAACAACAAAGAGAT
CGTTTACTAGCAATGAAAAAGAACGAGAGAGAAAAACAATTGGATCAATA
TTCCAAAACCGAGTCTAAGAAACGCCCTACTTCAGCTAGGGTGGCACGCC
AAGCTGTATCGGGTGGCGGTGCTGAAGCCGCAAAACCTGCCGTTTCTGCT
GAAGATGCAAAGAAGATAGCAATGAGAAAAGCTTTAGCTGAAAAATTACG
AAAAGAAGTcatcaacaaataaATGTCAGACTGGGAATTCATATTCGATG
GTGTCTTTGGTTTTCTTTCATCGCCTATGTGGCTTGCTCCTATAATGCAT
TTCATTGAGAACCAGTCTGTGGTGTTCAAGGAGAGTGAAGAAAATTACCA
TGAATGGACCCAAATACACAAACAATATGGAGAACTGGTTGAGTCTTTGC
TTTCAAGTTACTTGCAAGATGTTGGGATAACTGAAGAACAATTCATGCAA
GCATGTAAAACCCCCGGTGTTGAAGAAAGAGCTGATATGCAAcaaatttt
cgaaCAATTATGGGCATcagatgattttgaaattttcaaacgaatgatga
ttcaaaagaatgtcgaattagagtTGCAAGCTCTTGAATTGGTCCGCAAA
AGACAAGgtAAAAAGGCCAAGCAACAGAAGAAAAAGACCAAATCAAAAGT
TGCAATGACTGAGGACGAAATCTTGGCTCAAGTTATGAAACAATCTGAGC
TTGAATATCAAGAACATCAAAAACGACTCAAAGATGATGAAACTGAAACA
AAATCTGAATCCAAATTTGACGATGCCATGGAAAAAGTATTGTCAGAATC
GACAAATCACTTTGAAAAATTAGAAAAAGAGGTTGAGTTGAAAGAACAAG
AGACGAAACAGTACGTGGAGGAGAATATTTCGCAAGAGTTGACTACCAAA
GAGGAAGAGGTACCAACACCAAAGCCAAGCGAGACAAAACAATCAGAGCC
TGCCAAACCAAAATCACCTGTAAAAACATCAACAGCTTCCAGTGAGCCAG
TCAAATCAAAAAGTCCAGAAATTCCAACACTAAAGACCAAAGCACCGTTA
TCACCTATCAAAAGATCAGCCGGTTCTGAAGCTGCCAGTGAATGGATGAA
GAATGCTAGGGAAGAAAATCAACCACCTGCATCCACTTCTGCATCCAGTA
GCAAGgGGTCTGACATGACTGAAGACGATATGGCAAAACGAATCGAATAT
TTGAAACAACAAAGAGATCGTTTACTAGCAATGAAAAAGAACGAGAGAGA
AAAACAATTGGATCAATATTCCAAAACCGAGTCTAAGAAACGCCCTACTT
CAGCTAGGGTGGCACGCCAAGCTGTATCGGGTGGCGGTGCTGAAGCCGCA
AAACCTGCCGTTTCTGCTGAAGATGCAAAGAAGATAGCAATGAGAAAAGC
TTTAGCTGAAAAATTACGAAAAGAAGTcatcaacaaataaATGTCAGACT
GGGAATTCATATTCGATGGTGTCTTTGGTTTTCTTTCATCGCCTATGTGG
CTTGCTCCTATAATGCATTTCATTGAGAACCAGTCTGTGGTGTTCAAGGA
GAGTGAAGAAAATTACCATGAATGGACCCAAATACACAAACAATATGGAG
AACTGGTTGAGTCTTTGCTTTCAAGTTACTTGCAAGATGTTGGGATAACT
GAAGAACAATTCATGCAAGCATGTAAAACCCCCGGTGTTGAAGAAAGAGC
TGATATGCAAcaaattttcgaaCAATTATGGGCATcagatgattttgaaa
ttttcaaacgaatgatgattcaaaagaatgtcgaattagagtTGCAAGCT
CTTGAATTGGTCCGCAAAAGACAAGgtAAAAAGGCCAAGCAACAGAAGAA
AAAGACCAAATCAAAAGTTGCAATGACTGAGGACGAAATCTTGGCTCAAG
TTATGAAACAATCTGAGCTTGAATATCAAGAACATCAAAAACGACTCAAA
GATGATGAAACTGAAACAAAATCTGAATCCAAATTTGACGATGCCATGGA
AAAAGTATTGTCAGAATCGACAAATCACTTTGAAAAATTAGAAAAAGAGG
TTGAGTTGAAAGAACAAGAGACGAAACAGTACGTGGAGGAGAATATTTCG
CAAGAGTTGACTACCAAAGAGGAAGAGGTACCAACACCAAAGCCAAGCGA
GACAAAACAATCAGAGCCTGCCAAACCAAAATCACCTGTAAAAACATCAA
CAGCTTCCAGTGAGCCAGTCAAATCAAAAAGTCCAGAAATTCCAACACTA
AAGACCAAAGCACCGTTATCACCTATCAAAAGATCAGCCGGTTCTGAAGC
TGCCAGTGAATGGATGAAGAATGCTAGGGAAGAAAATCAACCACCTGCAT
CCACTTCTGCATCCAGTAGCAAGgGGTCTGACATGACTGAAGACGATATG
GCAAAACGAATCGAATATTTGAAACAACAAAGAGATCGTTTACTAGCAAT
GAAAAAGAACGAGAGAGAAAAACAATTGGATCAATATTCCAAAACCGAGT
CTAAGAAACGCCCTACTTCAGCTAGGGTGGCACGCCAAGCTGTATCGGGT
GGCGGTGCTGAAGCCGCAAAACCTGCCGTTTCTGCTGAAGATGCAAAGAA
GATAGCAATGAGAAAAGCTTTAGCTGAAAAATTACGAAAAGAAGTcatca
acaaataaATGTCAGACTGGGAATTCATATTCGATGGTGTCTTTGGTTTT
CTTTCATCGCCTATGTGGCTTGCTCCTATAATGCATTTCATTGAGAACCA
GTCTGTGGTGTTCAAGGAGAGTGAAGAAAATTACCATGAATGGACCCAAA
TACACAAACAATATGGAGAACTGGTTGAGTCTTTGCTTTCAAGTTACTTG
CAAGATGTTGGGATAACTGAAGAACAATTCATGCAAGCATGTAAAACCCC
CGGTGTTGAAGAAAGAGCTGATATGCAAcaaattttcgaaCAATTATGGG
CATcagatgattttgaaattttcaaacgaatgatgattcaaaagaatgtc
gaattagagtTGCAAGCTCTTGAATTGGTCCGCAAAAGACAAGgtAAAAA
GGCCAAGCAACAGAAGAAAAAGACCAAATCAAAAGTTGCAATGACTGAGG
ACGAAATCTTGGCTCAAGTTATGAAACAATCTGAGCTTGAATATCAAGAA
CATCAAAAACGACTCAAAGATGATGAAACTGAAACAAAATCTGAATCCAA
ATTTGACGATGCCATGGAAAAAGTATTGTCAGAATCGACAAATCACTTTG
AAAAATTAGAAAAAGAGGTTGAGTTGAAAGAACAAGAGACGAAACAGTAC
GTGGAGGAGAATATTTCGCAAGAGTTGACTACCAAAGAGGAAGAGGTACC
AACACCAAAGCCAAGCGAGACAAAACAATCAGAGCCTGCCAAACCAAAAT
CACCTGTAAAAACATCAACAGCTTCCAGTGAGCCAGTCAAATCAAAAAGT
CCAGAAATTCCAACACTAAAGACCAAAGCACCGTTATCACCTATCAAAAG
ATCAGCCGGTTCTGAAGCTGCCAGTGAATGGATGAAGAATGCTAGGGAAG
AAAATCAACCACCTGCATCCACTTCTGCATCCAGTAGCAAGgGGTCTGAC
ATGACTGAAGACGATATGGCAAAACGAATCGAATATTTGAAACAACAAAG
AGATCGTTTACTAGCAATGAAAAAGAACGAGAGAGAAAAACAATTGGATC
AATATTCCAAAACCGAGTCTAAGAAACGCCCTACTTCAGCTAGGGTGGCA
CGCCAAGCTGTATCGGGTGGCGGTGCTGAAGCCGCAAAACCTGCCGTTTC
TGCTGAAGATGCAAAGAAGATAGCAATGAGAAAAGCTTTAGCTGAAAAAT
TACGAAAAGAAGTcatcaacaaataaATGTCAGACTGGGAATTCATATTC
GATGGTGTCTTTGGTTTTCTTTCATCGCCTATGTGGCTTGCTCCTATAAT
GCATTTCATTGAGAACCAGTCTGTGGTGTTCAAGGAGAGTGAAGAAAATT
ACCATGAATGGACCCAAATACACAAACAATATGGAGAACTGGTTGAGTCT
TTGCTTTCAAGTTACTTGCAAGATGTTGGGATAACTGAAGAACAATTCAT
GCAAGCATGTAAAACCCCCGGTGTTGAAGAAAGAGCTGATATGCAAcaaa
ttttcgaaCAATTATGGGCATcagatgattttgaaattttcaaacgaatg
atgattcaaaagaatgtcgaattagagtTGCAAGCTCTTGAATTGGTCCG
CAAAAGACAAGgtAAAAAGGCCAAGCAACAGAAGAAAAAGACCAAATCAA
AAGTTGCAATGACTGAGGACGAAATCTTGGCTCAAGTTATGAAACAATCT
GAGCTTGAATATCAAGAACATCAAAAACGACTCAAAGATGATGAAACTGA
AACAAAATCTGAATCCAAATTTGACGATGCCATGGAAAAAGTATTGTCAG
AATCGACAAATCACTTTGAAAAATTAGAAAAAGAGGTTGAGTTGAAAGAA
CAAGAGACGAAACAGTACGTGGAGGAGAATATTTCGCAAGAGTTGACTAC
CAAAGAGGAAGAGGTACCAACACCAAAGCCAAGCGAGACAAAACAATCAG
AGCCTGCCAAACCAAAATCACCTGTAAAAACATCAACAGCTTCCAGTGAG
CCAGTCAAATCAAAAAGTCCAGAAATTCCAACACTAAAGACCAAAGCACC
GTTATCACCTATCAAAAGATCAGCCGGTTCTGAAGCTGCCAGTGAATGGA
TGAAGAATGCTAGGGAAGAAAATCAACCACCTGCATCCACTTCTGCATCC
AGTAGCAAGgGGTCTGACATGACTGAAGACGATATGGCAAAACGAATCGA
ATATTTGAAACAACAAAGAGATCGTTTACTAGCAATGAAAAAGAACGAGA
GAGAAAAACAATTGGATCAATATTCCAAAACCGAGTCTAAGAAACGCCCT
ACTTCAGCTAGGGTGGCACGCCAAGCTGTATCGGGTGGCGGTGCTGAAGC
CGCAAAACCTGCCGTTTCTGCTGAAGATGCAAAGAAGATAGCAATGAGAA
AAGCTTTAGCTGAAAAATTACGAAAAGAAGTcatcaacaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034201XLOC_034201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054223-exon-scaffold_242-1491911889:605923..606096TCONS_00054223-exon-scaffold_242-1491911889:605923..606096Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1510915933:605923..606096TCONS_00054223-exon-scaffold_242-1510915933:605923..606096Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1575043694:605923..606096TCONS_00054223-exon-scaffold_242-1575043694:605923..606096Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1491911889:606543..606607TCONS_00054223-exon-scaffold_242-1491911889:606543..606607Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1510915933:606543..606607TCONS_00054223-exon-scaffold_242-1510915933:606543..606607Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1575043694:606543..606607TCONS_00054223-exon-scaffold_242-1575043694:606543..606607Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1491911889:606840..606944TCONS_00054223-exon-scaffold_242-1491911889:606840..606944Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1510915933:606840..606944TCONS_00054223-exon-scaffold_242-1510915933:606840..606944Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1575043694:606840..606944TCONS_00054223-exon-scaffold_242-1575043694:606840..606944Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1491911889:607242..607356TCONS_00054223-exon-scaffold_242-1491911889:607242..607356Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1510915933:607242..607356TCONS_00054223-exon-scaffold_242-1510915933:607242..607356Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1575043694:607242..607356TCONS_00054223-exon-scaffold_242-1575043694:607242..607356Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1491911889:607548..607758TCONS_00054223-exon-scaffold_242-1491911889:607548..607758Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1510915933:607548..607758TCONS_00054223-exon-scaffold_242-1510915933:607548..607758Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1575043694:607548..607758TCONS_00054223-exon-scaffold_242-1575043694:607548..607758Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1491911889:608200..608290TCONS_00054223-exon-scaffold_242-1491911889:608200..608290Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1510915933:608200..608290TCONS_00054223-exon-scaffold_242-1510915933:608200..608290Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1575043694:608200..608290TCONS_00054223-exon-scaffold_242-1575043694:608200..608290Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1491911889:608772..609017TCONS_00054223-exon-scaffold_242-1491911889:608772..609017Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1510915933:608772..609017TCONS_00054223-exon-scaffold_242-1510915933:608772..609017Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1575043694:608772..609017TCONS_00054223-exon-scaffold_242-1575043694:608772..609017Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1491911889:609503..610518TCONS_00054223-exon-scaffold_242-1491911889:609503..610518Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1510915933:609503..610518TCONS_00054223-exon-scaffold_242-1510915933:609503..610518Clytia hemisphaericaexon
TCONS_00054223-exon-scaffold_242-1575043694:609503..610518TCONS_00054223-exon-scaffold_242-1575043694:609503..610518Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054223-proteinTCONS_00054223-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:605923..610518 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
164.148	153.052	241.173	234.629	109.376	82.8872	69.223	76.6464	53.8102	60.6917	48.6449	33.1365	24.3886	21.532	28.3524	36.0041	39.6852	36.0562	11.3515	18.427	32.2786	34.7261	63.7978	64.1176	26.6258	31.3528	53.6083	43.9609	63.3644	47.5506
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023379ARF-like_2-bdp_dom
Blast
[Close]
BLAST of TCONS_00054223 vs. Swiss-Prot (Human)
Match: CFA36 (Cilia- and flagella-associated protein 36 OS=Homo sapiens GN=CFAP36 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.012e-28
Identity = 65/172 (37.79%), Postives = 105/172 (61.05%), Query Frame = 3 
Query:  105 VFGFLSSPMWLAPIMHFIENQSVVFKESEENYHEWTQIHKQYGELVESLLSSYLQDVGITEEQFMQACKTPGVEERADMQQIFEQLWASDDFEIFKRMMIQKNVELELQALELV--RXXXXXXXXXXXXXXXXXVAMTEDEILAQVMKQSELEY-QEHQKRLKDDETETKSE 611
            + GFL  P W  PI+ F+E +  VF + EE+   +T+IH++Y ELVE LL  YL+++GI E+QF +AC +P  +     Q I + + A++DF IFK MM+QKN+E++LQA+ ++  R               S +   E +IL +V+++S+ EY QE +++ K   +E K+E
Sbjct:   16 IAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELVEKLLEGYLKEIGINEDQFQEACTSPLAKTHTS-QAILQPVLAAEDFTIFKAMMVQKNIEMQLQAIRIIQERNGVLPDCLTDGSDVVSDLEHEEMKILREVLRKSKEEYDQEEERKRKKQLSEAKTE 186
The following BLAST results are available for this feature:
BLAST of TCONS_00054223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CFA361.012e-2837.79Cilia- and flagella-associated protein 36 OS=Homo ... [more]
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