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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054231 ID=TCONS_00054231|Name=TCONS_00054231|organism=Clytia hemisphaerica|type=transcript|length=1455bpRun BLAST on NCBI protein sequence of TCONS_00054231-protein >TCONS_00054231-protein ID=TCONS_00054231-protein|Name=TCONS_00054231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp MISRRKKTKVNSADFISTFDLTELKQSNCSTKMKAAQIIFASIALFYLRNRun BLAST on NCBI transcript from alignment at scaffold_242:711580..721230+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054231 ID=TCONS_00054231|Name=TCONS_00054231|organism=Clytia hemisphaerica|type=transcript|length=9651bp|location=Sequence derived from alignment at scaffold_242:711580..721230+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:711580..721230+ >TCONS_00054231 ID=TCONS_00054231|Name=TCONS_00054231|organism=Clytia hemisphaerica|type=CDS|length=20970bp|location=Sequence derived from alignment at scaffold_242:711580..721230+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054231 vs. Swiss-Prot (Human)
Match: LGMN (Legumain OS=Homo sapiens GN=LGMN PE=1 SV=1) HSP 1 Score: 442.195 bits (1136), Expect = 4.122e-151 Identity = 213/409 (52.08%), Postives = 285/409 (69.68%), Query Frame = 1
Query: 181 SKHWALVIAGSNGWYNYRHQADACHAYQILNKHGIPEENIVVMMYDDIANNRENPTRGKIINMPNGPDVYEGVPKDYTKEEVTPENFLNILQGNKDKVKG-GSGKVIDSGPDDHIFVFFTDHGAPGLIAFPDSELHARQLQEALVSMNQKQRYKQMVLYIEACESGSMFNRHRLPTNINVFATTAANGVESSYACYYDKKRQTYLGDVYSVKWMENSDKANFLQETLESQFDLVKKETNTSHVMQFGDMNISKEPIGDFQGNAEIAFDNTTKHYTPVPIVDAIPSPDVPLNIMYNKLREVRTSQERDQVLTMINDEHKMRKIIKSTVRDVVERLVSNEHKQHRIINTPATPTNMRCYENAVTKFRTNCFNFNK--YEHALRHVYVLSNLCDEGLHMIEVERAIEKSCFA 1398
KHW +++AGSNGWYNYRHQADACHAYQI++++GIP+E IVVMMYDDIA + +NPT G +IN PNG DVY+GVPKDYT E+VTP+NFL +L+G+ + VKG GSGKV+ SGP DH+F++FTDHG+ G++ FP+ +LH + L E + M + + Y++MV YIEACESGSM N LP NINV+ATTAAN ESSYACYYD+KR TYLGD YSV WME+SD + +ETL Q+ LVK TNTSHVMQ+G+ IS + FQG A ++ PV +D PSPDVPL IM KL +E Q+ I R +I+ +VR +V L ++E + ++++ A T CY A+ FRT+CFN++ YE+ALRH+YVL NLC++ + ++ +++ C
Sbjct: 27 GKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYRKMVFYIEACESGSMMN--HLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVMQFQGMKRKA--SSPVPLPPVTHLDLTPSPDVPLTIMKRKLMNTNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASEAEVEQLLSERAPLTGHSCYPEALLHFRTHCFNWHSPTYEYALRHLYVLVNLCEKPYPLHRIKLSMDHVCLG 431 The following BLAST results are available for this feature:
BLAST of TCONS_00054231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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