TCONS_00054241 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054241
Unique Name	TCONS_00054241
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	877

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_242:979320..988541+
coding sequence from alignment at scaffold_242:979320..988541+

transcript sequence

>TCONS_00054241 ID=TCONS_00054241|Name=TCONS_00054241|organism=Clytia hemisphaerica|type=transcript|length=877bp
CATTTGTGGAGCAAACTTCAAGTCAAAgttatcttttaaaagaacaaaat
attcTGAACACGAAAGTCTACATACAAACATACAGAccacggctattaat
atatagatgaaCAAATTACTTCCTACTAATTTAATATCCTAATTACCAAC
ATGTAATTAATTTTGAAACTCTAATACGCAAACAGATATTATAAATTGCT
GTAGTGTATGTGGACAGAGTGCAAGAAAGGGAGCCATTgatgagaaagaa
gaaaaaagggaAGAAAATGTTATTTGAGATTTCAtggaagttttttgttt
ttgtcctTCTCATAACATTTACATCAGCTGTCGAAACCGAAACTCAAGAG
CACTTGGAGATCAAATTGTTTACCATAGCAACGGATCCAACAGATGGATA
TAACAGGTTCATGAAATCTGCAAAGCATTATGGGTATGATGTAGAGGTAT
GTGGTATGAACCAGAAATGGCTAGGAGGAGATTTATCGAAGGGGCCAGGT
GGCGGCTTCAAGATCAAACTGCTAATTAGGTGTTTGAAACAgtacaaaga
agaaaaagatatGTTGGCTATGTTCACTGACAGTTATGATGTAGTTTTGA
ATCAACCACCATCATACGTATTAAAACAATACAAAGAGATGAATGCAAGT
GTTATATTTTCTGCTGAAGACCTCATCTGGCCTGATCGCTCATTGGCTAA
ACATTACCCTGACAGTGATGGATACAGATATCTTTGCTCAGGAGGGTACA
TTGGTCCCGTATCAACTATCTGGAAATTACTATTATTGAAAGATATTGAA
AACCGAGCAGACGACCAACTGTATTTCACAAACATCTTCCTTGAAAGTCG
GGTAAGTAatattaaatttaattttcg

Run BLAST on NCBI

protein sequence of TCONS_00054241-protein

>TCONS_00054241-protein ID=TCONS_00054241-protein|Name=TCONS_00054241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MRKKKKGKKMLFEISWKFFVFVLLITFTSAVETETQEHLEIKLFTIATDP
TDGYNRFMKSAKHYGYDVEVCGMNQKWLGGDLSKGPGGGFKIKLLIRCLK
QYKEEKDMLAMFTDSYDVVLNQPPSYVLKQYKEMNASVIFSAEDLIWPDR
SLAKHYPDSDGYRYLCSGGYIGPVSTIWKLLLLKDIENRADDQLYFTNIF
LESRVSNIKFNF

Run BLAST on NCBI

transcript from alignment at scaffold_242:979320..988541+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054241 ID=TCONS_00054241|Name=TCONS_00054241|organism=Clytia hemisphaerica|type=transcript|length=9222bp|location=Sequence derived from alignment at scaffold_242:979320..988541+ (Clytia hemisphaerica)
CATTTGTGGAGCAAACTTCAAGTCAAAgttatcttttaaaagaacaaaat
attcTGAACACGAAAGTCTACATACAAACATACAGAccacggctattaat
atatagatgaaCAAATTACTTCCTACTAATTTAATATCCTAATTACCAAC
ATGTAATTAATTTTGAAACTCTAATACGCAAACAGATATTATAAATTGCT
GTAGTGTATGTGGACAGAGTGCAAGAAAGGGAGCCATTgatgagaaagaa
gaaaaaagggaAGAAAATGTTATTTGAGATTTCAtggaagttttttgttt
ttgtcctTCTCATAACATTTACATCAGCTGTCGAAACCGAAACTCAAGGT
ATTTACTTGCCTTTCTTAATCTGGATCTTGGAAAACCCGGAGGGGTACAA
CGTGGATATGGATAATTACAACGTGGAATGGATATTTCTTCTCCCTCCCT
ACCTTCCTCCCTCCTTCCATTCCGCTATGTCCTACATCATGTCCTACTTT
ttcacgtttttataagaagatcaaaaaccattttgtaagtatttttgcct
atttttataacaaatcgggtgtttaagagtcctcaaagccttaaaatgtt
cttaagattttggtttgattttgatTATATAGTTTTtcctcataaaaaaa
cgtgtatgttcaTAATAGCTGGAAAATTAATCGTGAAACTGAAAATTTCT
GAACTTAATTCCTAAGGTAGCCTTAAATGTAACGAGCCTTTGAAACTAAA
TATGTtgagaaaatatgaaaaatgaaaaatataatttttaagcGGATTCT
GAATACTCTGCGCTGGCACGTATGCACTTTAATAGCGACAATATTTTCAT
CCATGttttatgagcttttaagcGCAGTTGACTAGGCAAGCAGTAGCACC
AAAACAATTGTCAACCAAATCATAAACATTTGAACCCAGCCGATCTCCAT
TTCGTTTTCAAGAAAAAGGAATGGTTTCGAATCTTTTGGCTGAAAAACCA
GGTCAAATCGTCACATTCTCCACACCCCTTTAACATAGCGTCCTTAAGGG
TTTCTTCCCCCTATAATGAAGATTTTTTATCCCCATCATTCCCCCCCCTG
CCTCCAAAAGTTTCAGCATAAAAAGCTGTAATtggagggtggaggatata
ttgtccgggggtagcgaaaaatcatcaaaatttgccttgtccgggggtaa
attttatctgtccgggggtaatttgggttgtccggggggtcaactgatgc
ttgtccgggaggtaaaacccgttgtccggggggggggcaaaagtcacttt
gtccggtgGTCCCATTTGATGAATTTaacgcttattgttttccctGAGGT
AGTTCTAGTTCAAGGATAAATGGAAAGAATGGTTACTTTTAAACCATAAT
ATTGttggttgaaataaatgagAGAAAAACTCAGCATATGGTACTATATA
CACCCAAACAGTGATAGTAAAAAATACCACTAACGctacaaaatttttga
taaactttttcAGAGCACTTGGAGATCAAATTGTTTACCATAGCAACGGA
TCCAACAGATGGATATAACAGGTTCATGAAATCTGCAAAGCATTATGGGT
ATGATGTAGAGGTAAGTGAGACATAATTTTAACGTTGAAAGGTGTTTCTA
TTATCCGTAGACAAGGTTAGTGTATCAATATCCGAGCTGATACCATCCCC
CCCTCGgaccaaaccatggttggccctcacgGTGTCACTGAACTTATGCC
TTCCCTCCTAATATCAAAATGCTTCTTACGGCACTGGCTGACACACAAGG
TTGGTTCGACGTTGTgataacgttcacaacgtccagaTAGAGGGAATCAA
ATATCAGTTTTCGAATTTTAAATTTAGAGTTTAAAATCAACTGGGTGATT
TTACAACTGGGTACACTTATACAACCAATCTAGCAAATAAGCAAAATAAC
GCTCACAGTCTGGCAGAAGTAGAGTTGGCAAATTGAACAAATTCTAAAGT
TGGTGTGCTTCTTGGAACCCCACTGTGTAGAGTAGCACATtgaacatatc
aaaacttttcaaagagtCTCAGTAAGTTCAGCCATATCCCCATGTGCTGC
GGCTTGAAAAAATCGACTTTAGAaaagggacgagatggagttttcacaag
ctcttatttgatttggttggtcgttaaccagtaagtaagtctgcgaccgc
agtcggaggcgacccgaaggctcctctttcgatagctatctacccgaagg
taggggagggcgccacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNagcatcaagcagagaggcatcaagtaccattttggg
aatctttggtatgacccggctgggggttgaacccacaaccttgcgaaccg
tagccggatgctctaccattGTACTACGGTCGCTATGATcggttaaccag
taataaaaccattttgttactttttttaaagaacgcgtcattttaaTTAC
TTCAAtcaccaattattaaagtatcttataaaaactccatctcatctgtt
agaaaaaataacattttatcTGACAAAAGTTGATATTTGGCCCAGCGCGC
AGCGCAATGGGCCTTTAAAACACAACTGGTCGAAAAttgactttgtcggg
gcctatgCGCGCAATTATCAATTGACGAATCCAGGCTAGAAATTGAATTA
TCTGAATTACTATTGTGCGCATGcgtaagaaaataaaaaccaaaacaatT
AATACCTCCGATTGGTATGGTCAAATCTTTCTAATTATATAGAGATACtt
atttcagaaaaattaaTTCTTTATTGCTCGTCCGACTCGAGTTGCTCTAT
ATATCGTAAGAATTTACTCCTGTAAATTAAGTTGTATGGCGACCCTGCCA
CGGAAAATGTTGACACTACCAACACTGCAGACTTAAGACTTTCTTGTTCT
TTTTCAGGTATGTGGTATGAACCAGAAATGGCTAGGAGGAGATTTATCGA
AGGGGCCAGGTGGCGGCTTCAAGATCAAACTGCTAATTAGGTGTTTGAAA
CAgtacaaagaagaaaaagatatGTTGGCTATGTTCACTGACAGGTAATG
AATGGATGTCCGTAAAAAATAGATGTccgtgaaaaataaaaatttctgaa
aaatgaaaaaatattcccAGATACCTTATTACTTCGTATcatgaatttat
tatagacactgggaAAACAAcgtataaaacggtggagagcatagcattgt
ctttcttttgtttaaggaaacaatcgaggatctagctttgtccgcaaagg
acaactgtcatggcggcttgaagttctctgattttgaaaaatgattaata
atctcttttctaaaaagttctctatctttatctttttgtacttttactcg
ctaaaaatttggaaataaatgctaaaatacttaACGGATAAATGTATTAA
ATCTGTtgtgacaaaaacatcatcttacaagaaaaatcaaacaaaaggcc
TAAAATGACACAGAATTTTAAGTTGGCAATATCTCTCTAACATCTTTCCG
AGAAGAGCTAAGATCAACATATatgagacttgagtgtcttggcttcaccg
tggtatgaaaatattttggaggcTCGTGGTTGATCGGTGGTTTTattaag
gttaaattttgaaaatttctggtgtcaacattcaatttttcatacatagc
atgttttttgtatctttcttgcaacttgaaacgtcataacgacacgtaat
tagcaattattttgatgcgtttgcctctctaaggaaaacttaattttcat
tttgggaattgaaatgactacagtatgtggcccccaaaacggcgatcaaa
tttgaaatttctctcaaatctagaggaaaagagattttacaaaNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtttctcgagatatctttaagatatgaatac
aaaattttgaccatagttttgaaatatgatttagagggttttgggcataa
atttatttgataaaattttacagtatacccctggttgtcaaaatgcaggt
ttggggcccccaaaacggaggtgtagctaaaatcaaattattaagcccat
tGGTAACAGGGgaaaaaactatgaacatatttgtgttttcccttaaattt
acgacccgatggatgtaaaatttatgattttatgaAATACTTCAAGAcct
tcgatattgcaaagtccaaactgaaaatttagaaattttcaaaatgacaa
atttgatttaacaacgtcttaatcaagtttttgaaaacaaatctcttttg
aaaatagttccatacatgtatggaataagctgtgaaaattttagaaaaaa
agcttagctgaaactgaaaatgttaagctttaaagatatttttatcctat
attttgcaaaaaaatgacagaatttgccgtttttgccgattcagcgaaaa
attttatatataatatgaattttttgttataaactattaactcgaGCTGA
TAGGAAAagaattcaaagattttttgctttttctcatatttagatttttc
ggttttgtcaatactgattctagggctccaaaatactggttgaccttcaa
gatgctatatcttttacccagcctctaaagtcacagatgtatttgtaTTT
TCTGAACGGTATAAGGTGTataaagtttcctataccccgttttcataact
tattttcaatatccaaggagctagagtgagttatatgcaatttttatcta
attttggtgttaaaatatttcctttagacgcaaatatgttattttgaatc
cgtctcaaaccagtaaaaacatgctcatttttaNcattctttcaaaataa
acaaaaatcgtttaattctgataaatctacaagtcagaatcttcatttta
atgaaaacctccgttttgggggccatctccgttttgggggccatatactg
tatgttaagatgaaaaaaatgattaaaatgttacgaaaaatcgtttaatg
aaggaaggagagtgaacaataatgtcattactgcggacaaggctagaaca
tgagaaatcaatgaaaatatagctcgttggttatccagtgtctataataa
attcttgtTCGAATAAACCCCTGGtcatttattaattttcttttaggagg
ggcttttattcgagggggcgtttatcaaataatttataACCGAGGCCACT
TTTAAAGCGTGAATTGGAaccttattttttcttctcattCTTATTGTTgg
gtacaaaatataaaaatatatcaacTTGAGCCTGTAGAAACgggtcaaaa
tcaatttgaatACTAAAAGATACAATTATTATCATATATCTAAGTTTTCC
TTCATAACATACTGCCTTACAGCTACCTGTTTCAAAATAAACACTCCTCC
TAGAGGGGAGGCTTtcattcgaagggggcgtttgTTTGAGGGGCGTtctt
taatgatttttcttcAAAGGAGGGGCTTTTATTCGAGGGGACGTTTAAAA
GGAatggcgtttattcgaagtaatacggtatttaCCTAAAGAACAAGGGT
GCCAAATTTCAGGCAAATTATAGACCATTTTTAACATCTGCAGGCTGCCC
GAAAGTATTAGCCTCGCTTTGGCGAAAAACTAATTCCGATAAATCaatac
ttttgaaaatgaaaaaagcaacCCCCGTTGTTGACtaaaggaacaagtgt
gccaaatttcagtcaaatcagaGCATTTGAAACCAGTCTGAAGAAAATTA
GTCTCACTTCGATAGCATGGTTTCCCTAACAAATAGGAGTACTCCCCGGA
GGGGGgcatttaggcaaaattgggtacgggccGTGCCATTCGTTCTGACA
GGGTcaccattttaccaaaaattcatatctgacagggtcaacttttcgaa
ctccagcggcacgttcccgtcggccgtcaaggtcagtgcccccccccccc
gggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttct
gacattacatcacggacccaacagctgattagttgtaagtgacgtaaaat
cagtcaatacgtcactttcaaccaatcagctgttgggtctgcggaagaca
ttgcaatggtgcatatcatgaatatttcaTTCTTTTAGTTATGATGTAGT
TTTGAATCAACCACCATCATACGTATTAAAACAATACAAAGAGATGAATG
CAAGTGTTATATTTTCTGCTGAAGACCTCATCTGGCCTGATCGCTCATTG
GCTGTAAGTTGATTTCTATATGTTTCTATAGGTTTTGAAACACCCTTACT
TTTCATTAAAACTTCAGTACGAATGCAATGTAAACGGTGAAAAATTACAG
AGTATCCGGGAAAAAAAGGAGAGTATCGTTAATTGAAGGTcctttgtttg
ctttgttttattGCGTATTTACGGACAAGGACATACTGTGTGTAACTGAA
TGAATTTCAATATATTGTCACAGGCACGACACAACGGGTACGGCAGGGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCGCCACCTGCCGtaccagatttttcaaaaaaaaaccgaaattttcttc
ttcgtcggtaaatcgctataaaatcgcttaaatttcctcattcgccgtac
cagatatgaAAAGCTTCTGTCGTGCCTGTTGTCAAGATGGTTCAATTTAG
GAAGAAAAATTTCCTCGTTTCTCTTTCTTCAACGTTATGTGCAGTTAGTG
GCTTtaaattttttatgtttaaagaATGTTAATCCTTAAAAAGGTCGAAA
GAGCGGCCATATTGAATTTTGTCTTAAAAGAACAAGAAACTTACATCGAA
CTATGCAGTGCTgacataatttttctttctttgtatttgACAGAAACATT
ACCCTGACAGTGATGGATACAGATATCTTTGCTCAGGAGGTAACTTTAGT
tttcatacacgcttttttatgtGAGagtggtgttttttcatttcatgatg
gatattcttaactcatttggggaaaatcatcctaaaatatacttacagca
ttcttaggttataattctaattcagactagatttaacatttagtacatac
gtctcaagcataaaatgacatttttttgaaagtatagtacgccttacttg
ggggtaatcgACAATTTATAATAGACNTGTATTACAATAGAagtctctta
ggaattcctcgagggaattctattgttaaTCAACcagaaacaatcccaca
atgcatcacctttttagaaaaataaaaaactccgataagatctattgaaA
ATGCTCTCAAAATGGCATTCCTAgcttcagttgccaaattccgTGATGGT
GATAAATTCAGTgccccaaaaacatttttcagatTATGGTGTTCATTTGA
AAAAGGTGTAAATTTTGTCAACGTTGTCTGTATATTTACTAACTATGTAA
GAAGATAGTGTTATGATTTTAAAGTATACTAAAATATGCACGCGATTTCT
ACTTGCCTTTTGCTAAAAATTGACTTTTGGAGAGGCAGTTTTAGCCAATT
TGGGCGGTATAAAGTCCAAAAGGGCCTCCTTAGATACTAAACATATAGGG
CCCCCTAAAATATAATTTGTGTCGACGGCACTGAAATtgttagcatattc
ttaattttttggccaatttcatcatgaatattcatataaagtatattctt
attaaaaaaaagcatgtaccATCTATCAAAAAGTCAATTACATTATACAT
AGTTTGAGACTTTATTTCACCAAAACCTCTGAAATATCCTACGCAGAGCT
ATATTCAAAAGTTCAAGCACTTCGGGATATTtaatccccggggggggggg
tactacacCCTTgttcgaccgacgggggtgctccgctgaggttcgaaaaa
tggaccctacgtggtNCCCCCCCCCgcgcttattccaatcccccggctat
ttattaggtacccgagagtaagtgaTTATATTTCATTCTCAAAATTCTAT
TGCATTCTACTTGATACAAAAGTTTTGAACTGTAAGAAGTCACggtttat
tgatattttttgtgcATTGTAGAAAATGAACAAACAGAGAACTAATTCGA
GACTGTGTATTGTTAGAGAGAATATGGCTTGTAAGAGTCGATAGGCAGAG
GTCAATGTTTTTCAAAGTTTAGAAAACATTCGTGCGAGAATGGCGATTTC
AGTCTTGCGGTGAATgcacttttttctcaaatattgcgTTCTGGATTTTN
catccccgtaacccatcttgccctagtaccccccccccctccccccggga
tTTAATCAGCCTCAAGACGTTGAGTTGTGTTTAACATTCACACCCTAAAA
TGTTCACGCcctaaaaattaaacaaattctaaatatcctaaatttaaaaa
agaaaaaatgtttccCCCAAATCCCTGCTATTTATGTAGGGTACATTGGT
CCCGTATCAACTATCTGGAAATTACTATTATTGAAAGATATTGAAAACCG
AGCAGACGACCAACTGTATTTCACAAACATCTTCCTTGAAAGTCGGGTAA
GTAatattaaatttaattttcg

Coding sequence (CDS) from alignment at scaffold_242:979320..988541+

>TCONS_00054241 ID=TCONS_00054241|Name=TCONS_00054241|organism=Clytia hemisphaerica|type=CDS|length=3816bp|location=Sequence derived from alignment at scaffold_242:979320..988541+ (Clytia hemisphaerica)
atgagaaagaagaaaaaagggaAGAAAATGTTATTTGAGATTTCAtggaa
gttttttgtttttgtcctTCTCATAACATTTACATCAGCTGTCGAAACCG
AAACTCAAGAGCACTTGGAGATCAAATTGTTTACCATAGCAACGGATCCA
ACAGATGGATATAACAGGTTCATGAAATCTGCAAAGCATTATGGGTATGA
TGTAGAGGTATGTGGTATGAACCAGAAATGGCTAGGAGGAGATTTATCGA
AGGGGCCAGGTGGCGGCTTCAAGATCAAACTGCTAATTAGGTGTTTGAAA
CAgtacaaagaagaaaaagatatGTTGGCTATGTTCACTGACAGTTATGA
TGTAGTTTTGAATCAACCACCATCATACGTATTAAAACAATACAAAGAGA
TGAATGCAAGTGTTATATTTTCTGCTGAAGACCTCATCTGGCCTGATCGC
TCATTGGCTAAACATTACCCTGACAGTGATGGATACAGATATCTTTGCTC
AGGAGGGTACATTGGTCCCGTATCAACTATCTGGAAATTACTATTATTGA
AAGATATTGAAAACCGAGCAGACGACCAACTGTATTTCACAAACATCTTC
CTTGAAAGTCGGGTAAGTAatattaaatttaattttatgagaaagaagaa
aaaagggaAGAAAATGTTATTTGAGATTTCAtggaagttttttgtttttg
tcctTCTCATAACATTTACATCAGCTGTCGAAACCGAAACTCAAGAGCAC
TTGGAGATCAAATTGTTTACCATAGCAACGGATCCAACAGATGGATATAA
CAGGTTCATGAAATCTGCAAAGCATTATGGGTATGATGTAGAGGTATGTG
GTATGAACCAGAAATGGCTAGGAGGAGATTTATCGAAGGGGCCAGGTGGC
GGCTTCAAGATCAAACTGCTAATTAGGTGTTTGAAACAgtacaaagaaga
aaaagatatGTTGGCTATGTTCACTGACAGTTATGATGTAGTTTTGAATC
AACCACCATCATACGTATTAAAACAATACAAAGAGATGAATGCAAGTGTT
ATATTTTCTGCTGAAGACCTCATCTGGCCTGATCGCTCATTGGCTAAACA
TTACCCTGACAGTGATGGATACAGATATCTTTGCTCAGGAGGGTACATTG
GTCCCGTATCAACTATCTGGAAATTACTATTATTGAAAGATATTGAAAAC
CGAGCAGACGACCAACTGTATTTCACAAACATCTTCCTTGAAAGTCGGGT
AAGTAatattaaatttaattttatgagaaagaagaaaaaagggaAGAAAA
TGTTATTTGAGATTTCAtggaagttttttgtttttgtcctTCTCATAACA
TTTACATCAGCTGTCGAAACCGAAACTCAAGAGCACTTGGAGATCAAATT
GTTTACCATAGCAACGGATCCAACAGATGGATATAACAGGTTCATGAAAT
CTGCAAAGCATTATGGGTATGATGTAGAGGTATGTGGTATGAACCAGAAA
TGGCTAGGAGGAGATTTATCGAAGGGGCCAGGTGGCGGCTTCAAGATCAA
ACTGCTAATTAGGTGTTTGAAACAgtacaaagaagaaaaagatatGTTGG
CTATGTTCACTGACAGTTATGATGTAGTTTTGAATCAACCACCATCATAC
GTATTAAAACAATACAAAGAGATGAATGCAAGTGTTATATTTTCTGCTGA
AGACCTCATCTGGCCTGATCGCTCATTGGCTAAACATTACCCTGACAGTG
ATGGATACAGATATCTTTGCTCAGGAGGGTACATTGGTCCCGTATCAACT
ATCTGGAAATTACTATTATTGAAAGATATTGAAAACCGAGCAGACGACCA
ACTGTATTTCACAAACATCTTCCTTGAAAGTCGGGTAAGTAatattaaat
ttaattttatgagaaagaagaaaaaagggaAGAAAATGTTATTTGAGATT
TCAtggaagttttttgtttttgtcctTCTCATAACATTTACATCAGCTGT
CGAAACCGAAACTCAAGAGCACTTGGAGATCAAATTGTTTACCATAGCAA
CGGATCCAACAGATGGATATAACAGGTTCATGAAATCTGCAAAGCATTAT
GGGTATGATGTAGAGGTATGTGGTATGAACCAGAAATGGCTAGGAGGAGA
TTTATCGAAGGGGCCAGGTGGCGGCTTCAAGATCAAACTGCTAATTAGGT
GTTTGAAACAgtacaaagaagaaaaagatatGTTGGCTATGTTCACTGAC
AGTTATGATGTAGTTTTGAATCAACCACCATCATACGTATTAAAACAATA
CAAAGAGATGAATGCAAGTGTTATATTTTCTGCTGAAGACCTCATCTGGC
CTGATCGCTCATTGGCTAAACATTACCCTGACAGTGATGGATACAGATAT
CTTTGCTCAGGAGGGTACATTGGTCCCGTATCAACTATCTGGAAATTACT
ATTATTGAAAGATATTGAAAACCGAGCAGACGACCAACTGTATTTCACAA
ACATCTTCCTTGAAAGTCGGGTAAGTAatattaaatttaattttatgaga
aagaagaaaaaagggaAGAAAATGTTATTTGAGATTTCAtggaagttttt
tgtttttgtcctTCTCATAACATTTACATCAGCTGTCGAAACCGAAACTC
AAGAGCACTTGGAGATCAAATTGTTTACCATAGCAACGGATCCAACAGAT
GGATATAACAGGTTCATGAAATCTGCAAAGCATTATGGGTATGATGTAGA
GGTATGTGGTATGAACCAGAAATGGCTAGGAGGAGATTTATCGAAGGGGC
CAGGTGGCGGCTTCAAGATCAAACTGCTAATTAGGTGTTTGAAACAgtac
aaagaagaaaaagatatGTTGGCTATGTTCACTGACAGTTATGATGTAGT
TTTGAATCAACCACCATCATACGTATTAAAACAATACAAAGAGATGAATG
CAAGTGTTATATTTTCTGCTGAAGACCTCATCTGGCCTGATCGCTCATTG
GCTAAACATTACCCTGACAGTGATGGATACAGATATCTTTGCTCAGGAGG
GTACATTGGTCCCGTATCAACTATCTGGAAATTACTATTATTGAAAGATA
TTGAAAACCGAGCAGACGACCAACTGTATTTCACAAACATCTTCCTTGAA
AGTCGGGTAAGTAatattaaatttaattttatgagaaagaagaaaaaagg
gaAGAAAATGTTATTTGAGATTTCAtggaagttttttgtttttgtcctTC
TCATAACATTTACATCAGCTGTCGAAACCGAAACTCAAGAGCACTTGGAG
ATCAAATTGTTTACCATAGCAACGGATCCAACAGATGGATATAACAGGTT
CATGAAATCTGCAAAGCATTATGGGTATGATGTAGAGGTATGTGGTATGA
ACCAGAAATGGCTAGGAGGAGATTTATCGAAGGGGCCAGGTGGCGGCTTC
AAGATCAAACTGCTAATTAGGTGTTTGAAACAgtacaaagaagaaaaaga
tatGTTGGCTATGTTCACTGACAGTTATGATGTAGTTTTGAATCAACCAC
CATCATACGTATTAAAACAATACAAAGAGATGAATGCAAGTGTTATATTT
TCTGCTGAAGACCTCATCTGGCCTGATCGCTCATTGGCTAAACATTACCC
TGACAGTGATGGATACAGATATCTTTGCTCAGGAGGGTACATTGGTCCCG
TATCAACTATCTGGAAATTACTATTATTGAAAGATATTGAAAACCGAGCA
GACGACCAACTGTATTTCACAAACATCTTCCTTGAAAGTCGGGTAAGTAa
tattaaatttaatttt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034214	XLOC_034214	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00054241-protein	TCONS_00054241-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_242	supercontig	scaffold_242:979320..988541 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.106221	0.051791	0.120269	0.29416	0.429734	0.622566	25.3325	30.556	36.2516	38.4729	21.2003	36.2555	16.778	17.6442	19.482	15.7289	1.03661	0.817305	0.22583	0.0590787	0.0513501	0.0751404	0	0	0.228089	0.203564	0	0	0	0

Blast

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BLAST of TCONS_00054241 vs. Swiss-Prot (Human)
Match: PLOD2 (Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Homo sapiens GN=PLOD2 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.453e-30
Identity = 60/161 (37.27%), Postives = 108/161 (67.08%), Query Frame = 3

Query:  366 LFTIATDPTDGYNRFMKSAKHYGYDVEVCGMNQKWLXXXXXXXXXXXFKIKLLIRCLKQYKEEKDMLAMFTDSYDVVLNQPPSYVLKQYKEMNASVIFSAEDLIWPDRSLAKHYPDSD-GYRYLCSGGYIGPVSTIWKLLLLKDIENRADDQLYFTNIFLE 845
            + T+AT  +DG++RFM+SAK++ Y V+V G  ++W GGD     GGG K++L+   ++ Y ++ D++ MFT+ +DV+    P  VLK++++ N  V+F+A+ ++WPD+ LA  YP    G RYL SGG+IG    + +++   ++++  DDQL++T ++++
Sbjct:   41 VITVATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINSIGGGQKVRLMKEVMEHYADQDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKVVFAADGILWPDKRLADKYPVVHIGKRYLNSGGFIGYAPYVNRIVQQWNLQDNDDDQLFYTKVYID 201

The following BLAST results are available for this feature:

BLAST of TCONS_00054241 vs. Swiss-Prot (Human)

BLAST of TCONS_00054241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PLOD2	1.453e-30	37.27	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 ...	[more]

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TCONS_00054241 (transcript) - C. hemisphaerica