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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054249 ID=TCONS_00054249|Name=TCONS_00054249|organism=Clytia hemisphaerica|type=transcript|length=2492bp
TTATATTACTTGAGGAAGCTGCTCACTGAACAGTTTAAATTGGGCAGTGG
AGAAAtgtaacaacaaagaaaaaaagaaattatcagGAATACGTTTGACT
GTGTATATTATAGAGGAAAGACTATTTCATTCGATATGATGGGGTGTGTT
TAGTTTGAAAGGTCATTTGTGGCACAATATGGCTGCTGTTGAAGCCACGG
AGCAAGAGAAGCCTGCTCCCCCAAAGGACTCTCCCGTCGATGATGTAGAA
GATACTAAGCGTAAGGCTATTCTTGATCAACTGGGTGAAAGAATCGAAGC
CATCTACGACACCAAGATCCAAGAAACCTTACAATTGAAAGCAGAATATG
AAGACCTCGCTTATTCAGTTATTCATAAAATCATTCGAAAAGCAAAGACT
GTAGATGCCCGATTCAGACCAAACAGCTTGGTATCCCTTGGTATGCCTTA
TAGTGGGATACAGGATAGTGGAATAATTGAATTCGAAATGATGTTACAGT
TATGTATGGGTACGAACAACTCCTTGTACCTTCATCACGAAAGAGGTGGA
AAGTCAGCCAGGATTCAACCAGTATCGACAAGCCTTTGGCAAGATTGTAT
GGATGAAAACAGCGTTTATATCTCACCTAAACGTGTTACAAGAGTATTAC
GTCAATACGTGAAGAGAGCCGTTTACGTGTTACGTAAGTACATTGAcatg
aagaaatttcaaaagcttCCTGAAGGTTTGACTGAGATTTACATGGAAGA
TGAAAGATTCAAAATTGTTCTCAGGATCAATCAGAATCTACGTGTCACTC
TTCTACCAGCCGTGTCCATCCCCGATTCACGTAGTGATATGTCACGTAAG
GATATCCCATCCACGTCACACGTGGTAGCTATTCAACTACCTGAAAAAAG
TGCAATCCCGTTCGTGGTCGATGAAAATAATAATCTACCATCACCAATTC
CCAAGATGAAAAGGAAAGGAAGACACATCAAGTTGGTTTGGCAATACTCT
TTTTTCGTAGCAGAAAAAAATAAGTTACGTACAATCTCGGATGGTTGTCG
TATTAAGTTGTTGCGGTTGTTAACTGAAGTGCGTGAGAGCGAGAGCGCTC
TTGCCAAGATCACGCCATACCACTTACAAACCATTTTCTTTCATGAGACC
GACCGTCTTCATCGAAGGAGAGACTGGAAAGAGAGTAAAATGGCGGCACG
ATTTTTGGATCTCTTACGAGCTCTCGCTTTGACGTTGGATAAAGGTAGCT
GTGAAAATTACTTTATGAGAGCTCCTGATTATCCAAGTGACAACTTGTAT
GAAGAGATTGGCCTCAAAGAACTTCAAGTAATGAAAAAACACGTGGAATC
ATTAATCGAGAACCCAATTGACTGTTTGGAAAGACTTTATACTCATTTGA
CACAGCATTAAAACCCTTTTACTAAAAGGACTGGAATGAGATATGATTTG
TTGTCTGTGATTGACATTATTATTAAGTAAAGAATTTATCAATCAAGGAA
CTTGTTCCTATATATAATTGTACTAGAAAATATCTCCAAGATGGCAAGTC
AGCCTAGATTCAGAGCTAATTGGTTTGATCGATAGATTTAGTCaaagaaa
ttgtaaatttaaaagCTTATATTATTCTGTGAAGAATGACTTTAAAGACT
TTCTAGAAAGACTTTTTAGGATTCTTTCAGTAAAAAGTGGCTTtcaggga
aaaaatttttcttgagatCACTCTCAATGAAGTGGAAACCTAGCCATCCT
ATAGGATGACTATTGCAGCATGAAGGTAGatcatccagctacggtgcgca
aggttgtgggttgaTCCCCAGCCGTgccataccaaagattcccaaaatgg
tacttaatgcctctctgcttgatgctcagcaactaagagtCGAGGGAAAG
AAGTGGCGCCCTCTCCTACCTTCGTTATACGAAgttatacgaaaagggag
ccttcgggtcgccatCGACttcggtcgcaaacttacttgcTTTACTATAG
GATGGTGTAACCGTACGTCTTTTCAGCATCCCAGAGAAAAACATGTTGAT
TTCCGAACTCTTGTAAACAATATTTTGGCATAAgaactttgtttattttg
atctGGGAGAGGTTTGTTTGGCCCATCACAGAATTCACAGGTTTCCTGAC
AACTTTTTTCCTGTCTCCACTGAAATTGTGaatattgttttgattgaaat
gacTCCCACAAAGAGATACTCTTTGTTTATGAAaacaattttatgagaac
aCAAGGCTGGAAATTGTCCTAAACCTAAgagcaaattaagaacaatctga
gcctcagatttcagaaagtACTGTACTGATTCCAActaattttaacagat
tttaaacctATTTTAAGTTTATAAGTATTTGTAAAGAAGATAAGCGtgtt
aagaacatcgtaagaacatttaagtctaaaaatttgaaaaaattaagaat
agcCTAGTCTGAGCCAAAATGTattggttcttatgaaaaaaa Run BLAST on NCBI protein sequence of TCONS_00054249-protein >TCONS_00054249-protein ID=TCONS_00054249-protein|Name=TCONS_00054249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MAAVEATEQEKPAPPKDSPVDDVEDTKRKAILDQLGERIEAIYDTKIQET
LQLKAEYEDLAYSVIHKIIRKAKTVDARFRPNSLVSLGMPYSGIQDSGII
EFEMMLQLCMGTNNSLYLHHERGGKSARIQPVSTSLWQDCMDENSVYISP
KRVTRVLRQYVKRAVYVLRKYIDMKKFQKLPEGLTEIYMEDERFKIVLRI
NQNLRVTLLPAVSIPDSRSDMSRKDIPSTSHVVAIQLPEKSAIPFVVDEN
NNLPSPIPKMKRKGRHIKLVWQYSFFVAEKNKLRTISDGCRIKLLRLLTE
VRESESALAKITPYHLQTIFFHETDRLHRRRDWKESKMAARFLDLLRALA
LTLDKGSCENYFMRAPDYPSDNLYEEIGLKELQVMKKHVESLIENPIDCL
ERLYTHLTQH Run BLAST on NCBI transcript from alignment at scaffold_242:1134660..1137722+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054249 ID=TCONS_00054249|Name=TCONS_00054249|organism=Clytia hemisphaerica|type=transcript|length=3063bp|location=Sequence derived from alignment at scaffold_242:1134660..1137722+ (Clytia hemisphaerica)
TTATATTACTTGAGGAAGCTGCTCACTGAACAGTGAGTGACAGTATATTT
TGTGTAAGAGCTCAGAACGTATTATGGtagaaaattatgttttttaatCG
GTTACTCTACCATGAGAAATCAAACATTGTTTGAGAAAGGCGCAACCTAC
TTTGCAATGACGCAACGATGAGCGGCTTACACTCTCAAAAGtcattattt
tccaaaattatttGAACGAATTATCTAACATAATTCGACAAGTttgatga
aaacaaaaaatatttctctatATTGTTTTTGATAGGTTTAAATTGGGCAG
TGGAGAAAtgtaacaacaaagaaaaaaagaaattatcagGAATACGTTTG
ACTGTGTATATTATAGAGGAAAGACTATTTCATTCGATATGATGGGGTGT
GTTTAGTTTGAAAGGTCATTTGTGGCACAATATGGCTGCTGTTGAAGGTA
CTTACTGTAACTTTTTCAACTTGTATTTAGATTTAGACAACGCACTATTT
TACAATTCCGTTGCTGGTTAAAGTTTAAAGAGAAAGCTGGGTTAAGATTT
TAAGGGAATGAGCTTCAACACTGTCCCGTTGAGTGAGAAGGGCGTTAAAA
TAATCTTCCGCtgtgtttttaaatatttttactactttgcaACCTATGGG
TTCTCTGGGAAATTCTTAATCCAAAGATTGATAAAAGATCATCCTTTTCT
TTAAATGGGTATCCCTGAGTCACATAAAAACACATTAAGTTTCTTTTGGA
TTTCCTTTCTTTCAGCCACGGAGCAAGAGAAGCCTGCTCCCCCAAAGGAC
TCTCCCGTCGATGATGTAGAAGATACTAAGCGTAAGGCTATTCTTGATCA
ACTGGGTGAAAGAATCGAAGCCATCTACGACACCAAGATCCAAGAAACCT
TACAATTGAAAGCAGAATATGAAGACCTCGCTTATTCAGTTATTCATAAA
ATCATTCGAAAAGCAAAGACTGTAGATGCCCGATTCAGACCAAACAGCTT
GGTATCCCTTGGTATGCCTTATAGTGGGATACAGGATAGTGGAATAATTG
AATTCGAAATGATGTTACAGTTATGTATGGGTACGAACAACTCCTTGTAC
CTTCATCACGAAAGAGGTGGAAAGTCAGCCAGGATTCAACCAGTATCGAC
AAGCCTTTGGCAAGATTGTATGGATGAAAACAGCGTTTATATCTCACCTA
AACGTGTTACAAGAGTATTACGTCAATACGTGAAGAGAGCCGTTTACGTG
TTACGTAAGTACATTGAcatgaagaaatttcaaaagcttCCTGAAGGTTT
GACTGAGATTTACATGGAAGATGAAAGATTCAAAATTGTTCTCAGGATCA
ATCAGAATCTACGTGTCACTCTTCTACCAGCCGTGTCCATCCCCGATTCA
CGTAGTGATATGTCACGTAAGGATATCCCATCCACGTCACACGTGGTAGC
TATTCAACTACCTGAAAAAAGTGCAATCCCGTTCGTGGTCGATGAAAATA
ATAATCTACCATCACCAATTCCCAAGATGAAAAGGAAAGGAAGACACATC
AAGTTGGTTTGGCAATACTCTTTTTTCGTAGCAGAAAAAAATAAGTTACG
TACAATCTCGGATGGTTGTCGTATTAAGTTGTTGCGGTTGTTAACTGAAG
TGCGTGAGAGCGAGAGCGCTCTTGCCAAGATCACGCCATACCACTTACAA
ACCATTTTCTTTCATGAGACCGACCGTCTTCATCGAAGGAGAGACTGGAA
AGAGAGTAAAATGGCGGCACGATTTTTGGATCTCTTACGAGCTCTCGCTT
TGACGTTGGATAAAGGTAGCTGTGAAAATTACTTTATGAGAGCTCCTGAT
TATCCAAGTGACAACTTGTATGAAGAGATTGGCCTCAAAGAACTTCAAGT
AATGAAAAAACACGTGGAATCATTAATCGAGAACCCAATTGACTGTTTGG
AAAGACTTTATACTCATTTGACACAGCATTAAAACCCTTTTACTAAAAGG
ACTGGAATGAGATATGATTTGTTGTCTGTGATTGACATTATTATTAAGTA
AAGAATTTATCAATCAAGGAACTTGTTCCTATATATAATTGTACTAGAAA
ATATCTCCAAGATGGCAAGTCAGCCTAGATTCAGAGCTAATTGGTTTGAT
CGATAGATTTAGTCaaagaaattgtaaatttaaaagCTTATATTATTCTG
TGAAGAATGACTTTAAAGACTTTCTAGAAAGACTTTTTAGGATTCTTTCA
GTAAAAAGTGGCTTtcagggaaaaaatttttcttgagatCACTCTCAATG
AAGTGGAAACCTAGCCATCCTATAGGATGACTATTGCAGCATGAAGGTAG
atcatccagctacggtgcgcaaggttgtgggttgaTCCCCAGCCGTgcca
taccaaagattcccaaaatggtacttaatgcctctctgcttgatgctcag
caactaagagtCGAGGGAAAGAAGTGGCGCCCTCTCCTACCTTCGTTATA
CGAAgttatacgaaaagggagccttcgggtcgccatCGACttcggtcgca
aacttacttgcTTTACTATAGGATGGTGTAACCGTACGTCTTTTCAGCAT
CCCAGAGAAAAACATGTTGATTTCCGAACTCTTGTAAACAATATTTTGGC
ATAAgaactttgtttattttgatctGGGAGAGGTTTGTTTGGCCCATCAC
AGAATTCACAGGTTTCCTGACAACTTTTTTCCTGTCTCCACTGAAATTGT
GaatattgttttgattgaaatgacTCCCACAAAGAGATACTCTTTGTTTA
TGAAaacaattttatgagaacaCAAGGCTGGAAATTGTCCTAAACCTAAg
agcaaattaagaacaatctgagcctcagatttcagaaagtACTGTACTGA
TTCCAActaattttaacagattttaaacctATTTTAAGTTTATAAGTATT
TGTAAAGAAGATAAGCGtgttaagaacatcgtaagaacatttaagtctaa
aaatttgaaaaaattaagaatagcCTAGTCTGAGCCAAAATGTattggtt
cttatgaaaaaaa Coding sequence (CDS) from alignment at scaffold_242:1134660..1137722+ >TCONS_00054249 ID=TCONS_00054249|Name=TCONS_00054249|organism=Clytia hemisphaerica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_242:1134660..1137722+ (Clytia hemisphaerica)
ATGGCTGCTGTTGAAGCCACGGAGCAAGAGAAGCCTGCTCCCCCAAAGGA
CTCTCCCGTCGATGATGTAGAAGATACTAAGCGTAAGGCTATTCTTGATC
AACTGGGTGAAAGAATCGAAGCCATCTACGACACCAAGATCCAAGAAACC
TTACAATTGAAAGCAGAATATGAAGACCTCGCTTATTCAGTTATTCATAA
AATCATTCGAAAAGCAAAGACTGTAGATGCCCGATTCAGACCAAACAGCT
TGGTATCCCTTGGTATGCCTTATAGTGGGATACAGGATAGTGGAATAATT
GAATTCGAAATGATGTTACAGTTATGTATGGGTACGAACAACTCCTTGTA
CCTTCATCACGAAAGAGGTGGAAAGTCAGCCAGGATTCAACCAGTATCGA
CAAGCCTTTGGCAAGATTGTATGGATGAAAACAGCGTTTATATCTCACCT
AAACGTGTTACAAGAGTATTACGTCAATACGTGAAGAGAGCCGTTTACGT
GTTACGTAAGTACATTGAcatgaagaaatttcaaaagcttCCTGAAGGTT
TGACTGAGATTTACATGGAAGATGAAAGATTCAAAATTGTTCTCAGGATC
AATCAGAATCTACGTGTCACTCTTCTACCAGCCGTGTCCATCCCCGATTC
ACGTAGTGATATGTCACGTAAGGATATCCCATCCACGTCACACGTGGTAG
CTATTCAACTACCTGAAAAAAGTGCAATCCCGTTCGTGGTCGATGAAAAT
AATAATCTACCATCACCAATTCCCAAGATGAAAAGGAAAGGAAGACACAT
CAAGTTGGTTTGGCAATACTCTTTTTTCGTAGCAGAAAAAAATAAGTTAC
GTACAATCTCGGATGGTTGTCGTATTAAGTTGTTGCGGTTGTTAACTGAA
GTGCGTGAGAGCGAGAGCGCTCTTGCCAAGATCACGCCATACCACTTACA
AACCATTTTCTTTCATGAGACCGACCGTCTTCATCGAAGGAGAGACTGGA
AAGAGAGTAAAATGGCGGCACGATTTTTGGATCTCTTACGAGCTCTCGCT
TTGACGTTGGATAAAGGTAGCTGTGAAAATTACTTTATGAGAGCTCCTGA
TTATCCAAGTGACAACTTGTATGAAGAGATTGGCCTCAAAGAACTTCAAG
TAATGAAAAAACACGTGGAATCATTAATCGAGAACCCAATTGACTGTTTG
GAAAGACTTTATACTCATTTGACACAGCATTAAATGGCTGCTGTTGAAGC
CACGGAGCAAGAGAAGCCTGCTCCCCCAAAGGACTCTCCCGTCGATGATG
TAGAAGATACTAAGCGTAAGGCTATTCTTGATCAACTGGGTGAAAGAATC
GAAGCCATCTACGACACCAAGATCCAAGAAACCTTACAATTGAAAGCAGA
ATATGAAGACCTCGCTTATTCAGTTATTCATAAAATCATTCGAAAAGCAA
AGACTGTAGATGCCCGATTCAGACCAAACAGCTTGGTATCCCTTGGTATG
CCTTATAGTGGGATACAGGATAGTGGAATAATTGAATTCGAAATGATGTT
ACAGTTATGTATGGGTACGAACAACTCCTTGTACCTTCATCACGAAAGAG
GTGGAAAGTCAGCCAGGATTCAACCAGTATCGACAAGCCTTTGGCAAGAT
TGTATGGATGAAAACAGCGTTTATATCTCACCTAAACGTGTTACAAGAGT
ATTACGTCAATACGTGAAGAGAGCCGTTTACGTGTTACGTAAGTACATTG
AcatgaagaaatttcaaaagcttCCTGAAGGTTTGACTGAGATTTACATG
GAAGATGAAAGATTCAAAATTGTTCTCAGGATCAATCAGAATCTACGTGT
CACTCTTCTACCAGCCGTGTCCATCCCCGATTCACGTAGTGATATGTCAC
GTAAGGATATCCCATCCACGTCACACGTGGTAGCTATTCAACTACCTGAA
AAAAGTGCAATCCCGTTCGTGGTCGATGAAAATAATAATCTACCATCACC
AATTCCCAAGATGAAAAGGAAAGGAAGACACATCAAGTTGGTTTGGCAAT
ACTCTTTTTTCGTAGCAGAAAAAAATAAGTTACGTACAATCTCGGATGGT
TGTCGTATTAAGTTGTTGCGGTTGTTAACTGAAGTGCGTGAGAGCGAGAG
CGCTCTTGCCAAGATCACGCCATACCACTTACAAACCATTTTCTTTCATG
AGACCGACCGTCTTCATCGAAGGAGAGACTGGAAAGAGAGTAAAATGGCG
GCACGATTTTTGGATCTCTTACGAGCTCTCGCTTTGACGTTGGATAAAGG
TAGCTGTGAAAATTACTTTATGAGAGCTCCTGATTATCCAAGTGACAACT
TGTATGAAGAGATTGGCCTCAAAGAACTTCAAGTAATGAAAAAACACGTG
GAATCATTAATCGAGAACCCAATTGACTGTTTGGAAAGACTTTATACTCA
TTTGACACAGCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054249-exon-scaffold_242-1491911889:1134660..1134691 | TCONS_00054249-exon-scaffold_242-1491911889:1134660..1134691 | Clytia hemisphaerica | exon |
| TCONS_00054249-exon-scaffold_242-1510915933:1134660..1134691 | TCONS_00054249-exon-scaffold_242-1510915933:1134660..1134691 | Clytia hemisphaerica | exon |
| TCONS_00054249-exon-scaffold_242-1575043694:1134660..1134691 | TCONS_00054249-exon-scaffold_242-1575043694:1134660..1134691 | Clytia hemisphaerica | exon |
| TCONS_00054249-exon-scaffold_242-1491911889:1134945..1135106 | TCONS_00054249-exon-scaffold_242-1491911889:1134945..1135106 | Clytia hemisphaerica | exon |
| TCONS_00054249-exon-scaffold_242-1510915933:1134945..1135106 | TCONS_00054249-exon-scaffold_242-1510915933:1134945..1135106 | Clytia hemisphaerica | exon |
| TCONS_00054249-exon-scaffold_242-1575043694:1134945..1135106 | TCONS_00054249-exon-scaffold_242-1575043694:1134945..1135106 | Clytia hemisphaerica | exon |
| TCONS_00054249-exon-scaffold_242-1491911889:1135425..1137722 | TCONS_00054249-exon-scaffold_242-1491911889:1135425..1137722 | Clytia hemisphaerica | exon |
| TCONS_00054249-exon-scaffold_242-1510915933:1135425..1137722 | TCONS_00054249-exon-scaffold_242-1510915933:1135425..1137722 | Clytia hemisphaerica | exon |
| TCONS_00054249-exon-scaffold_242-1575043694:1135425..1137722 | TCONS_00054249-exon-scaffold_242-1575043694:1135425..1137722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1134660..1137722 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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