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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054268 ID=TCONS_00054268|Name=TCONS_00054268|organism=Clytia hemisphaerica|type=transcript|length=1977bpRun BLAST on NCBI protein sequence of TCONS_00054268-protein >TCONS_00054268-protein ID=TCONS_00054268-protein|Name=TCONS_00054268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp MLFFLETIFIFSALLYVQDSEAVLSCGDPGPIYNGTIIGKANFNNGGIIRRun BLAST on NCBI transcript from alignment at scaffold_242:1526556..1537595+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054268 ID=TCONS_00054268|Name=TCONS_00054268|organism=Clytia hemisphaerica|type=transcript|length=11040bp|location=Sequence derived from alignment at scaffold_242:1526556..1537595+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:1526556..1537595+ >TCONS_00054268 ID=TCONS_00054268|Name=TCONS_00054268|organism=Clytia hemisphaerica|type=CDS|length=13365bp|location=Sequence derived from alignment at scaffold_242:1526556..1537595+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054268 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 108.612 bits (270), Expect = 4.172e-24 Identity = 79/272 (29.04%), Postives = 119/272 (43.75%), Query Frame = 3
Query: 342 LSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKEC--PPLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWD-HDNPYCQKKKDEDTEPDNVASVFNLVEYCSRLFPPIDGEVMGSNQVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCK 1148
+ CG+P I NG G +N++ G ++ Y CNK + KG C G WS +P C P C PP V + + TG+ + E ++ C G +G + C N W S+ P+ VP+ C P P+ NG ++ E ++VG +V F CN Y L+G + C GKW+ NP C K EP + + L E + +VG + F C +G+ + G + CL + QW+ P CK
Sbjct: 2144 VRCGEPPSIMNGYASG-SNYSFGAMVAYSCNKGFYIKGEKKSTCEATGQWSSPIPTCHPVSCGEPPKVENGFLEHTTGRIFESEVRYQCNPGYKSVGSPVFVCQANRHWHSESPLMCVPLD--------------CGKPPPIQNGFMKG------ENFEVGSKVQFFCNEGYELVGDSSWTCQKSGKWNKKSNPKCMPAK--CPEPPLLENQLVLKEL--------------TTEVG-VVTFSCKEGHVLQGPSVLKCLPSQQWNDSFPVCK 2377 HSP 2 Score: 100.523 bits (249), Expect = 1.202e-21 Identity = 72/259 (27.80%), Postives = 104/259 (40.15%), Query Frame = 3
Query: 390 KANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECP-PLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQKKKDEDTEPDNVASVFNLVEYCSRLFPPI--DGEVMGSN-QVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKPA 1154
+NF G ++ Y CN Y+ G L+C G W+G P C+ EC P + T G Q++C+ G +L G + C+ N +WS P C C P P+ NG I+ Y +Y+ C+ Y L G R C WD D P C P + +S PP+ +G+V G +E+ C++G+ + GA +CL NG WS TP C P
Sbjct: 2672 SSNFLYGTMVSYTCNPGYELLGNPVLICQEDGTWNGSAPSCISIECDLPTAPENGFLRFTETSMGSAVQYSCKPGHILAGSDLRLCLENRKWSGASPRCEAIS---------------CKKPNPVMNGSIKG------SNYTYLSTLYYECDPGYVLNGTERRTCQDDKNWDEDEPICI--------PVDCSS------------PPVSANGQVRGDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDCVPV 2889 HSP 3 Score: 97.8265 bits (242), Expect = 8.044e-21 Identity = 78/273 (28.57%), Postives = 113/273 (41.39%), Query Frame = 3
Query: 339 VLSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECPPLVVSDNEKTLTGKRYGF--EYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQKKKDEDTEPDNVASVFNLVEYCSRLFPPIDGEVMGSNQVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKP 1151
+SC P P+ NG+I G +N+ + Y+C+ Y G C +W D P C+P +C VS N + + G Y F E ++TC G +L G C+ NG WS P C VP+ C P L NG+ + + +G ++ V F C+ Y L G C G WD + P C+ P N +L F I G ++++C GY + G + CL NG WS +P C P
Sbjct: 2772 AISCKKPNPVMNGSIKG-SNYTYLSTLYYECDPGYVLNGTERRTCQDDKNWDEDEPICIPVDCSSPPVSANGQ-VRGDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDC-VPVR--------------CATPPQLANGVTEGLDYGFMKE------VTFHCHEGYILHGAPKLTCQSDGNWDAEIPLCK--------PVNCGPPEDLAHGFPNGFSFIHG---------GHIQYQCFPGYKLHGNSSRRCLSNGSWSGSSPSCLP 3004 HSP 4 Score: 93.5893 bits (231), Expect = 1.714e-19 Identity = 79/275 (28.73%), Postives = 116/275 (42.18%), Query Frame = 3
Query: 342 LSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDV-PKCLPKECPPLVVSDNEKTLTGKRYGFEY---QFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQKKKDEDTE--PDNVASVFNLVEYCSRLFPPIDGEVMGSNQVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCK 1148
L CG P PI NG + G+ NF G +++ CN+ Y+ G S+ C + G W+ PKC+P +CP + +N+ L K E F+C+ G VL G ++ +C+ + +W+ PVC++ + T PP I G P LH FG+ KY C + L G + C G W P C + E P+ + V L + L + C G+ +VG TLC NG W P CK
Sbjct: 2262 LDCGKPPPIQNGFMKGE-NFEVGSKVQFFCNEGYELVGDSSWTCQKSGKWNKKSNPKCMPAKCPEPPLLENQLVL--KELTTEVGVVTFSCKEGHVLQGPSVLKCLPSQQWNDSFPVCKIVLCTPPPL----ISFGVPIPSSALH--------FGSTVKYS--------CVGGFFLRGNSTTLCQPDGTWSSPLPECVPVECPQPEEIPNGIIDVQGLAYLSTAL-------------------YTCKPGFELVGNTTTLCGENGHWLGGKPTCK 2494 HSP 5 Score: 90.1225 bits (222), Expect = 2.084e-18 Identity = 77/296 (26.01%), Postives = 114/296 (38.51%), Query Frame = 3
Query: 339 VLSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECP-PLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQKKK-DEDTEPDNVASVFNLVEYCSRLFPPIDGEVMGSNQVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKPACSVHEC---PSNKKCVLDAITQ 1211
+SCG P NG I A F G + Y+CNK Y G C WS P C P +C P +++ + L+G Y ++C+ G L G +I C +G W PP C H +C P + + +I T + + V + C Y L G EC GKW + C DE D+ + E RLF G + C DGY++ ++ LC G+W + P C H C PS +L+++++
Sbjct: 1844 AVSCGKPAIPENGCIEELA-FTFGSKVTYRCNKGYTLAGDKESSCLANSSWSHSPPVCEPVKCSSPENINNGKYILSGLTYLSTASYSCDTGYSLQGPSIIECTASGIWDRAPPAC---------------HLVFCGEPPAIKDAVI------TGNNFTFRNTVTYTCKEGYTLAGLDTIECLADGKWSRSDQQCLAVSCDEPPIVDHASP-----ETAHRLF-------------GDIAFYYCSDGYSLADNSQLLCNAQGKWVPPEGQDMPRCIAHFCEKPPSVSYSILESVSK 2099 HSP 6 Score: 90.1225 bits (222), Expect = 2.120e-18 Identity = 71/273 (26.01%), Postives = 105/273 (38.46%), Query Frame = 3
Query: 339 VLSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECP-PLVVSDNEKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNGIIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQKKKDEDTEPDNVASVFNLVEYCSRLFPPIDGEVMGSN-QVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKCKP 1151
++ C P I G I + + G ++Y C + +G ST +C G WS +P+C+P ECP P + + + G Y +TC+ G L+G T C NG W P C+ C P+ + NG G V + CN +RL GP+ C G WD D P C +C P +G V G++ G+ + + C G+ + G C +G WS P C P
Sbjct: 2378 IVLCTPPPLISFGVPIPSSALHFGSTVKYSCVGGFFLRGNSTTLCQPDGTWSSPLPECVPVECPQPEEIPNGIIDVQGLAYLSTALYTCKPGFELVGNTTTLCGENGHWLGGKPTCKAIE---------------CLKPKEILNGKFSYTDL------HYGQTVTYSCNRGFRLEGPSALTCLETGDWDVDAPSCNAI------------------HCDSPQPIENGFVEGADYSYGAIIIYSCFPGFQVAGHAMQTCEESG-WSSSIPTCMP 2610 HSP 7 Score: 83.5741 bits (205), Expect = 2.463e-16 Identity = 67/275 (24.36%), Postives = 107/275 (38.91%), Query Frame = 3
Query: 342 LSCGDPGPIYNGTIIGKANFNNGGIIRYKCNKCYDRKGPSTLMCSRWGHWSGDVPKCLPKECPPLVVSDN----EKTLTGKRYGFEYQFTCEAGTVLIGRAITRCMCNGRWSSKPPVCRVPMATVPPTTQPPIHEGYCPPPEPLHNG--IIQAVRFGTEEKYQVGDRVYFLCNIRYRLIGPTYRECGWHGKWDHDNPYCQKKKDEDTEPDNVASVFNLVEYCSRLFPPIDGEVMGSN-QVGSFMEFRCHDGYTMVGANKTLCLRNGQWSKITPKC 1145
+ C PG NG G+ + G + + C + Y G + + C G W+ +P C C + +N E T +G + + C G L G + C+ N WS PPVC P+ C PE ++NG I+ + + + Y C+ Y L GP+ EC G WD P C + +C D + G+N + + + C +GYT+ G + CL +G+WS+ +C
Sbjct: 1787 IKCKAPGNPENGHSSGEI-YTVGAEVTFSCQEGYQLMGVTKITCLESGEWNHLIPYCKAVSCGKPAIPENGCIEELAFT---FGSKVTYRCNKGYTLAGDKESSCLANSSWSHSPPVCE------------PVK---CSSPENINNGKYILSGLTYLSTASYS--------CDTGYSLQGPSIIECTASGIWDRAPPACH------------------LVFCGEPPAIKDAVITGNNFTFRNTVTYTCKEGYTLAGLDTIECLADGKWSRSDQQC 2016 The following BLAST results are available for this feature:
BLAST of TCONS_00054268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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